genome.fa.s1.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  312  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104230663--104230721	31	1.9	31	100	0	118	25	25	20	28	1.99
104230701--104230927	50	4.5	50	93	0	373	25	22	16	35	1.94
104237090--104237120	13	2.3	14	94	5	55	64	6	0	29	1.18
104237116--104237162	17	2.8	17	83	6	51	63	0	4	31	1.13
104237215--104237271	24	2.4	25	80	11	66	54	3	3	38	1.35
104237334--104237385	25	2.1	24	82	3	59	65	0	5	28	1.16
104239513--104239599	29	3.1	29	69	18	67	52	8	20	18	1.70
104241509--104241572	29	2.2	28	83	2	74	76	4	3	15	1.08
104241516--104241563	17	2.8	16	75	25	53	77	6	4	12	1.11
104244743--104245071	44	7.6	44	80	9	327	27	25	16	31	1.96
104244772--104245071	86	3.5	84	77	8	309	27	25	15	31	1.96
104244752--104245085	128	2.6	127	79	8	379	27	24	16	31	1.96
104244754--104245242	215	2.3	212	80	8	544	29	24	15	30	1.96
104245157--104245373	44	5.0	44	70	16	137	29	22	15	32	1.95
104245160--104245405	131	1.9	131	86	1	350	29	21	16	32	1.95
104244762--104245387	171	3.7	169	77	10	573	28	24	15	31	1.96
104256777--104256826	24	2.1	23	82	10	57	26	0	16	58	1.38
104257526--104257565	17	2.4	17	86	0	53	57	2	10	30	1.45
104259238--104259286	4	12.8	4	83	16	68	75	0	2	22	0.90
104259231--104259290	8	8.0	7	85	10	59	78	0	1	20	0.84
104273710--104273738	6	4.8	6	100	0	58	68	0	13	17	1.20
104284633--104284660	14	2.0	14	100	0	56	64	0	7	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104284738--104284956	60	3.6	61	87	4	320	51	3	10	34	1.53
104292149--104292187	20	2.0	20	100	0	78	20	20	15	43	1.88
104298215--104298280	33	2.0	33	100	0	132	21	24	15	39	1.91
104304793--104304852	17	3.5	17	74	21	63	65	0	1	33	1.03
104305348--104305467	17	6.9	17	81	4	141	39	14	9	37	1.78
104305335--104305476	35	4.0	35	92	2	221	38	14	9	38	1.77
104305862--104306214	83	4.2	83	94	0	607	27	19	20	32	1.97
104306257--104306582	83	3.9	83	93	1	521	26	19	19	33	1.96
104305972--104306499	285	1.9	285	93	1	907	27	19	20	33	1.96
104305900--104306707	368	2.2	367	94	1	1402	27	19	19	33	1.96
104306518--104307083	119	4.9	119	88	6	861	30	18	17	33	1.94
104306838--104307051	107	2.0	107	95	0	383	30	19	17	32	1.95
104308104--104308169	21	3.0	20	75	23	62	3	16	0	80	0.84
104308118--104308165	13	3.6	13	83	10	62	2	14	0	83	0.74
104308104--104308171	35	2.0	33	83	11	84	2	16	0	80	0.82
104308110--104308171	32	2.0	32	87	9	92	1	14	0	83	0.71
104308112--104308169	22	2.6	22	83	8	75	1	13	0	84	0.70
104308112--104308168	8	7.6	8	73	15	50	1	14	0	84	0.71
104313945--104314004	17	3.5	17	74	21	63	65	0	1	33	1.03
104314498--104314617	17	6.9	17	81	4	141	37	15	10	37	1.80
104314485--104314626	35	4.0	35	92	2	221	37	14	9	38	1.80
104326605--104326687	27	3.0	28	87	5	123	18	3	31	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104326609--104326701	27	3.5	26	84	11	111	15	4	34	46	1.65
104326609--104326701	29	3.6	25	83	13	109	15	4	34	46	1.65
104326890--104326975	23	4.0	22	69	13	72	16	22	25	36	1.94
104326890--104326969	21	3.8	20	70	9	52	16	22	26	35	1.95
104333519--104333604	27	3.2	27	67	23	81	43	30	5	20	1.76
104333529--104333618	27	3.2	30	66	18	93	40	31	4	24	1.75
104333513--104333620	54	2.0	54	100	0	216	40	31	5	22	1.77
104336362--104336389	13	2.2	13	100	0	56	64	0	14	21	1.29
104339681--104339856	46	3.8	45	74	15	137	26	19	30	22	1.98
104342841--104342892	16	3.2	16	84	10	63	44	0	3	51	1.19
104342890--104342934	23	2.0	23	82	8	56	64	2	8	24	1.34
104346166--104346370	27	7.6	27	86	3	250	30	27	14	26	1.95
104351168--104351344	27	6.6	27	83	4	196	29	28	15	27	1.96
104351168--104351344	55	3.3	54	82	4	205	29	28	15	27	1.96
104351189--104351343	82	1.9	80	86	5	222	29	28	15	27	1.96
104351892--104351916	13	1.9	13	100	0	50	32	16	20	32	1.94
104352672--104352714	20	2.1	20	86	4	59	16	20	0	62	1.32
104357394--104357598	27	7.6	27	86	3	250	30	27	14	26	1.95
104362767--104362860	45	2.1	45	100	0	188	41	14	18	25	1.88
104362901--104362972	27	2.6	28	80	4	85	40	15	29	15	1.88
104377522--104377583	30	2.1	30	81	6	72	58	3	3	35	1.31
104380433--104380483	20	2.5	20	80	3	57	41	1	0	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104381796--104381820	5	5.0	5	100	0	50	80	0	0	20	0.72
104381988--104382148	87	1.9	87	82	0	205	18	24	22	34	1.96
104386599--104387136	50	10.7	50	80	3	569	26	18	25	30	1.98
104386599--104387136	101	5.3	101	79	4	534	26	18	25	30	1.98
104386593--104387145	151	3.7	151	90	0	872	26	18	25	29	1.98
104391027--104391158	71	1.9	71	80	6	160	29	18	22	28	1.98
104399118--104399170	13	4.1	13	87	0	79	18	18	45	16	1.86
104404868--104404899	15	2.1	15	100	0	64	56	0	6	37	1.25
104411237--104412190	69	13.8	69	77	3	671	21	17	23	37	1.94
104411237--104412190	138	6.9	139	75	5	752	21	17	23	37	1.94
104422742--104422819	38	2.0	39	85	2	104	26	11	3	57	1.51
104425452--104425563	55	2.0	55	89	0	170	25	15	8	50	1.72
104431420--104431459	19	2.2	17	86	8	53	57	0	35	7	1.27
104432006--104432043	12	3.5	11	86	10	51	63	2	0	34	1.09
104432006--104432049	22	2.0	22	86	0	61	59	4	0	36	1.18
104434421--104434585	43	3.8	43	78	10	151	23	13	29	33	1.93
104440073--104440101	2	15.0	2	92	7	51	51	0	0	48	1.00
104442684--104442725	20	2.2	19	87	12	59	45	0	4	50	1.23
104442771--104442838	21	3.3	22	82	10	72	35	4	0	60	1.17
104442788--104442839	14	3.6	14	75	12	52	32	5	0	61	1.20
104455154--104455377	40	5.7	40	86	6	296	26	26	22	24	2.00
104455154--104455377	79	2.8	80	86	6	296	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104458012--104459020	44	23.1	44	83	3	1133	31	13	26	27	1.94
104459388--104459420	17	1.9	17	93	0	57	69	6	6	18	1.30
104460677--104460721	22	2.0	22	83	8	56	31	2	2	64	1.18
104460774--104460870	16	5.9	16	74	16	74	29	3	3	63	1.24
104460794--104460895	32	3.2	32	78	12	102	26	4	4	63	1.35
104472741--104473178	220	2.0	219	94	1	761	31	18	22	27	1.97
104473152--104473662	44	11.6	44	87	3	706	29	13	27	29	1.94
104473929--104473961	17	1.9	17	93	0	57	69	6	6	18	1.30
104475236--104475280	22	2.0	22	83	8	56	31	2	2	64	1.18
104475322--104475438	33	3.7	30	75	19	96	29	3	5	62	1.33
104479724--104479798	37	2.0	37	94	0	132	37	0	22	40	1.54
104479783--104479827	20	2.2	21	92	4	74	37	2	24	35	1.68
104479875--104480086	40	5.6	40	68	23	152	25	19	18	36	1.95
104479858--104480118	35	7.0	35	67	22	149	26	19	19	34	1.96
104479857--104480143	75	3.8	75	91	0	448	26	19	19	35	1.95
104480371--104480423	24	2.2	24	96	0	97	41	7	7	43	1.61
104481487--104481536	10	5.0	10	79	13	50	24	8	2	66	1.29
104481497--104481536	20	2.0	20	90	9	64	25	7	2	65	1.32
104482261--104482294	18	1.9	18	94	5	61	26	2	5	64	1.30
104485610--104485658	21	2.3	21	92	0	80	14	26	14	44	1.83
104487838--104487902	5	13.4	5	81	12	66	18	0	0	81	0.69
104487830--104487899	13	5.8	12	80	15	74	17	0	1	81	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104487829--104487899	6	11.7	6	77	19	76	16	0	1	81	0.76
104489486--104489535	10	5.0	10	79	13	50	24	8	2	66	1.29
104489496--104489535	20	2.0	20	90	9	64	25	7	2	65	1.32
104500306--104500569	34	7.7	34	82	5	273	31	25	14	27	1.95
104500306--104500569	69	3.9	68	81	6	291	31	25	14	27	1.95
104500624--104500689	27	2.4	27	94	0	114	21	24	12	42	1.86
104503778--104503814	18	2.1	18	94	0	65	40	21	5	32	1.76
104516313--104516448	42	3.2	44	63	23	117	18	24	18	38	1.92
104516283--104516454	84	2.0	84	100	0	344	19	21	18	40	1.91
104519965--104520011	24	2.0	24	83	8	60	63	10	0	25	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349