genome.fa.s1.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  153  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49246289--49246345	26	2.2	26	81	9	62	26	17	19	36	1.94
49247577--49247618	16	2.7	15	82	13	50	64	0	30	4	1.14
49251275--49251327	20	2.6	21	76	11	56	67	0	24	7	1.16
49251269--49251319	15	3.5	15	79	10	54	66	0	25	7	1.18
49251499--49251774	40	6.8	40	89	3	408	25	21	28	24	1.99
49255681--49255952	47	5.8	47	96	0	490	33	8	29	29	1.86
49256071--49256149	37	2.1	37	85	0	113	24	17	31	26	1.97
49257367--49257637	40	6.8	40	93	0	445	23	22	28	25	1.99
49261463--49261736	96	2.9	92	85	11	351	32	7	29	30	1.85
49261469--49261791	47	6.8	47	96	1	565	33	8	29	29	1.86
49268231--49268402	93	1.8	93	90	2	274	30	29	19	20	1.97
49268232--49268398	46	3.6	45	75	10	167	30	29	19	20	1.97
49271561--49271735	46	3.8	45	77	7	190	28	29	20	21	1.98
49271568--49271740	93	1.9	93	93	0	301	27	29	20	21	1.98
49274036--49274186	42	3.6	42	76	6	135	28	25	15	29	1.96
49276216--49276384	27	6.2	27	84	4	196	30	26	15	27	1.96
49276228--49276383	82	1.9	81	88	3	233	29	28	15	26	1.96
49281610--49281717	42	2.6	42	86	4	139	30	26	14	27	1.95
49289777--49289834	20	2.9	20	86	0	80	46	5	27	20	1.72
49299429--49299491	31	2.0	31	90	0	99	25	23	14	36	1.93
49299685--49299758	25	3.0	24	84	9	96	27	21	20	31	1.98
49299807--49299873	20	3.3	20	91	0	107	32	22	10	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49301614--49301766	28	5.5	28	84	1	182	28	11	30	28	1.92
49304010--49304365	47	7.5	47	90	6	542	27	31	8	32	1.88
49304010--49304365	96	3.7	95	90	7	537	27	31	8	32	1.88
49304010--49304365	143	2.5	143	95	1	626	27	31	8	32	1.88
49309569--49309609	21	2.0	21	90	0	64	36	53	4	4	1.44
49338931--49339065	70	1.9	70	90	3	218	31	11	19	37	1.88
49339839--49340009	43	4.0	44	84	6	217	25	19	30	23	1.98
49342170--49342246	29	2.7	29	79	0	91	22	18	19	40	1.92
49347179--49347436	43	6.0	43	84	3	340	24	18	28	27	1.98
49349449--49349500	27	2.0	26	84	3	68	34	21	25	19	1.96
49350106--49350159	27	2.0	27	85	3	74	35	20	22	22	1.96
49350162--49350359	27	7.3	27	86	0	252	24	20	18	36	1.94
49350178--49350359	81	2.2	81	91	1	285	23	19	19	37	1.94
49356215--49356268	27	2.0	26	85	3	72	38	20	18	22	1.93
49356297--49356439	27	5.3	27	84	4	191	24	18	19	37	1.94
49356269--49356440	54	3.2	54	85	3	231	24	19	19	36	1.95
49365093--49365303	43	4.9	43	83	5	275	26	17	28	27	1.97
49369530--49369558	11	2.6	11	100	0	58	10	6	24	58	1.55
49371861--49371962	43	2.4	43	83	6	118	28	17	21	32	1.96
49371903--49372012	42	2.6	41	78	7	114	30	17	21	30	1.96
49373182--49373206	13	1.9	13	100	0	50	16	20	24	40	1.91
49374599--49374640	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49376506--49376678	45	3.9	43	81	5	168	30	23	13	33	1.93
49376758--49376859	44	2.3	44	82	0	132	33	20	19	26	1.97
49377032--49377160	44	2.9	44	81	2	143	30	21	17	31	1.96
49383109--49383333	40	5.6	40	79	3	254	28	27	21	23	1.99
49383175--49383329	83	1.9	83	86	0	220	28	27	21	21	1.99
49392372--49392410	3	13.0	3	100	0	78	66	0	0	33	0.92
49396588--49396634	23	2.1	23	88	4	69	42	2	2	53	1.25
49396680--49396715	19	1.9	18	88	5	54	58	0	0	41	0.98
49400374--49400482	43	2.6	42	78	11	114	28	16	26	28	1.97
49403103--49403366	39	6.7	39	86	3	323	28	27	23	20	1.99
49403103--49403366	118	2.2	117	86	3	377	28	27	23	20	1.99
49406302--49406483	79	2.3	80	83	6	228	24	28	23	23	2.00
49406302--49406483	40	4.6	41	85	6	216	24	28	23	23	2.00
49406300--49406483	39	4.6	40	84	6	207	24	28	23	23	1.99
49414137--49414358	40	5.6	39	85	7	247	25	28	22	23	1.99
49414137--49414358	76	2.8	79	83	9	274	25	28	22	23	1.99
49414139--49414354	116	1.8	119	82	8	282	25	28	22	24	1.99
49422237--49422417	40	4.6	40	81	10	205	24	28	23	23	1.99
49425510--49425540	16	1.9	16	100	0	62	38	0	9	51	1.35
49425509--49425542	10	3.4	10	87	0	50	41	0	8	50	1.34
49425674--49425723	26	1.9	26	84	15	68	40	22	10	28	1.86
49428365--49428637	39	6.9	39	84	2	314	29	27	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49428412--49428635	79	2.9	78	87	4	333	28	28	23	19	1.98
49428374--49428637	118	2.2	118	87	0	377	28	27	23	20	1.99
49438488--49438528	18	2.3	18	86	0	55	26	21	17	34	1.95
49438554--49438595	17	2.5	17	84	7	50	33	26	14	26	1.94
49440393--49440829	47	9.2	47	89	6	634	27	30	9	32	1.88
49440463--49440545	27	3.3	27	61	22	70	32	28	6	32	1.82
49440393--49440829	96	4.6	95	93	3	693	27	30	9	32	1.88
49440393--49440829	143	3.1	142	90	5	643	27	30	9	32	1.88
49444534--49444628	40	2.4	40	84	8	115	27	17	30	24	1.97
49456907--49457056	67	2.2	67	83	8	180	33	17	28	21	1.96
49474438--49474587	43	3.5	42	76	9	117	30	26	20	23	1.99
49478903--49478961	16	3.7	16	76	0	55	49	13	20	16	1.80
49483898--49483960	28	2.2	28	88	0	90	41	17	23	17	1.90
49484067--49484125	26	2.3	25	82	8	73	28	10	23	37	1.88
49486016--49486078	15	4.4	14	72	20	58	57	15	15	11	1.66
49486021--49486078	30	1.9	30	86	6	82	56	13	17	12	1.66
49490542--49490608	29	2.3	29	89	0	98	26	16	28	28	1.97
49493516--49493667	77	2.0	77	100	0	304	27	17	25	28	1.98
49496051--49496205	41	3.7	42	79	11	165	29	25	20	23	1.99
49501042--49501117	38	2.0	38	100	0	152	31	13	23	31	1.93
49502306--49502450	40	3.6	40	85	4	193	25	24	26	23	2.00
49509091--49509166	38	2.0	38	100	0	152	31	13	23	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49510353--49510497	40	3.6	40	85	4	193	25	24	26	23	2.00
49513145--49513179	17	2.0	18	88	5	54	28	2	8	60	1.41
49526959--49527087	46	2.8	46	95	0	222	19	21	29	29	1.98
49533174--49533208	14	2.4	15	95	4	63	14	11	0	74	1.08
49544535--49544689	38	3.8	38	77	14	166	31	15	25	27	1.96
49544457--49544699	86	2.8	85	86	1	335	32	15	23	29	1.95
49544625--49544701	38	2.0	38	90	5	120	32	14	24	28	1.94
49547944--49547984	15	2.7	15	80	0	55	14	19	12	53	1.72
49550661--49550907	38	6.0	38	72	16	197	30	14	24	30	1.94
49550661--49550899	86	2.8	86	90	0	354	30	14	24	30	1.94
49555639--49555677	14	2.6	16	88	8	55	33	20	2	43	1.65
49569419--49569540	45	2.8	43	79	4	127	30	27	16	26	1.97
49569448--49569539	45	2.0	45	87	0	130	33	23	15	27	1.95
49576116--49576331	40	5.5	39	79	9	208	24	23	27	25	2.00
49576116--49576331	80	2.7	79	85	4	258	24	23	27	25	2.00
49584200--49584401	40	5.1	40	78	4	194	23	22	27	25	2.00
49584200--49584415	80	2.7	79	79	7	233	25	22	26	25	2.00
49592894--49593051	39	4.1	39	90	0	244	27	22	24	25	1.99
49601065--49601222	39	4.1	39	94	0	262	27	22	24	26	2.00
49618938--49619115	27	6.6	27	82	3	169	28	28	16	26	1.97
49620337--49620533	105	1.9	107	79	6	231	28	27	12	31	1.92
49627133--49627310	27	6.6	27	82	3	169	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49637600--49637663	27	2.3	28	91	2	103	32	28	7	31	1.85
49637769--49637859	28	3.2	28	90	4	139	20	24	23	31	1.98
49637769--49637884	56	2.1	55	82	9	137	19	24	21	34	1.96
49638681--49638736	26	2.1	27	96	3	105	48	25	3	23	1.67
49647192--49647369	27	6.6	27	83	3	205	26	15	28	29	1.96
49647193--49647348	82	1.9	81	88	3	233	26	15	28	29	1.96
49647189--49647369	82	2.2	81	83	2	229	27	15	27	29	1.96
49655378--49655555	27	6.6	27	83	3	205	26	15	28	29	1.96
49655379--49655534	82	1.9	81	88	3	233	26	15	28	29	1.96
49655375--49655555	82	2.2	81	83	2	229	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349