genome.fa.s1.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  97  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30000558--30000966	27	15.1	27	80	4	405	27	21	10	40	1.85
30000971--30001166	27	7.3	27	86	0	248	36	19	18	25	1.95
30001365--30001447	27	3.1	26	87	5	112	19	21	21	37	1.94
30001542--30001593	22	2.4	22	80	0	59	21	25	21	32	1.98
30001758--30001830	27	2.7	27	85	6	87	17	24	20	36	1.94
30001949--30002050	6	16.8	6	76	17	86	21	17	11	49	1.79
30001949--30002050	30	3.4	30	87	6	143	21	17	11	49	1.79
30011176--30011218	3	14.3	3	100	0	86	32	32	0	34	1.58
30014209--30014253	15	2.9	16	77	9	58	26	13	4	55	1.57
30021438--30021547	42	2.6	42	89	2	168	30	16	25	27	1.96
30024017--30024047	16	1.9	16	93	0	53	35	22	0	41	1.54
30024014--30024053	20	2.0	20	85	0	53	37	22	0	40	1.54
30024297--30024498	55	3.8	53	78	10	178	22	25	17	35	1.95
30024254--30024498	54	4.6	52	75	10	196	22	24	17	36	1.95
30032291--30032346	23	2.5	23	97	2	105	50	21	8	19	1.75
30040420--30040539	44	2.6	46	83	7	147	25	28	20	25	1.99
30040415--30040631	47	4.7	46	75	11	167	23	29	21	25	1.99
30040370--30040687	94	3.4	91	77	6	280	23	28	20	27	1.99
30042845--30042893	23	2.1	23	81	7	55	65	2	26	6	1.27
30047968--30048091	25	5.0	24	77	9	115	33	24	16	25	1.96
30051312--30051463	43	3.5	43	71	10	123	31	25	17	25	1.97
30051331--30051456	42	2.9	44	73	10	125	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30052569--30052593	13	1.9	13	100	0	50	40	24	4	32	1.73
30054148--30054329	46	4.0	46	91	1	267	24	32	9	33	1.87
30054148--30054329	91	2.0	91	89	0	274	24	32	9	33	1.87
30054346--30054421	22	3.3	22	66	28	59	25	28	11	34	1.91
30054308--30054634	47	7.0	47	92	0	494	25	29	11	33	1.90
30058462--30058715	40	6.4	40	92	4	424	26	26	20	25	1.99
30060197--30060379	46	4.0	46	90	0	276	26	31	8	34	1.86
30060353--30060590	47	5.1	47	91	1	334	26	29	10	34	1.89
30072659--30072734	25	3.2	25	62	11	68	35	5	26	32	1.79
30072446--30073025	47	12.3	47	90	1	910	35	8	28	28	1.86
30076405--30076450	13	3.7	12	82	8	56	43	8	2	45	1.47
30078767--30078795	14	2.1	14	100	0	58	37	13	13	34	1.85
30081875--30082010	57	2.4	56	77	4	139	30	22	18	29	1.97
30086249--30086384	68	1.9	71	85	8	190	49	6	4	39	1.49
30090135--30090192	30	1.9	30	82	6	73	20	32	27	18	1.97
30095436--30095621	48	3.8	49	81	4	216	25	28	17	28	1.97
30098203--30098430	31	7.4	31	93	1	368	29	25	15	28	1.96
30098637--30098719	25	3.4	24	86	8	87	25	21	24	28	1.99
30098650--30098743	25	3.8	25	91	1	145	25	22	25	26	2.00
30099552--30099629	27	2.9	27	78	14	81	23	19	21	35	1.96
30099647--30099943	27	11.0	27	80	5	215	30	8	20	40	1.82
30099647--30099938	80	3.6	80	76	5	257	30	8	20	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30099930--30100059	27	4.9	27	84	0	172	41	8	20	29	1.82
30099905--30100053	54	2.8	53	85	1	181	40	8	18	32	1.81
30111198--30111415	40	5.5	40	90	2	300	26	27	22	23	2.00
30116241--30116311	24	2.8	25	80	6	90	29	19	23	26	1.98
30116268--30116323	24	2.5	22	78	16	69	33	16	21	28	1.95
30116270--30116346	22	3.3	23	80	8	77	28	19	22	29	1.98
30119549--30119590	21	2.0	22	86	9	61	28	23	7	40	1.81
30121653--30121690	19	2.0	20	85	15	53	39	23	0	36	1.55
30121919--30122086	46	3.6	45	77	12	180	30	28	19	22	1.97
30121920--30122090	93	1.8	93	92	0	288	30	28	19	21	1.97
30126701--30126752	22	2.3	23	83	9	63	32	19	21	26	1.97
30126735--30126785	23	2.2	23	85	0	66	39	19	17	23	1.92
30131977--30132094	58	2.0	58	98	0	227	48	22	1	27	1.60
30134068--30134109	9	4.6	9	77	16	50	66	0	2	30	1.04
30140847--30140879	18	1.9	17	88	11	50	48	6	15	30	1.69
30142726--30142896	93	1.8	93	96	0	315	28	28	21	21	1.98
30142721--30142893	46	3.7	46	80	13	219	29	27	20	21	1.98
30150295--30150465	93	1.8	93	96	0	315	28	29	21	21	1.98
30150290--30150462	46	3.7	46	80	13	219	28	28	21	21	1.98
30150995--30151046	27	1.9	27	100	0	104	23	32	7	36	1.83
30151000--30151053	27	2.1	26	86	6	74	24	33	7	35	1.83
30153848--30153967	43	2.8	42	79	9	118	27	25	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30170719--30171035	158	2.0	159	92	0	528	29	16	17	36	1.92
30174664--30174706	9	5.1	9	78	16	56	23	62	0	13	1.31
30174607--30174790	90	2.0	90	80	2	199	28	45	2	23	1.67
30174697--30174818	57	2.1	56	82	7	147	27	41	4	26	1.74
30175944--30175999	14	3.9	14	77	13	60	55	30	0	14	1.40
30181394--30181443	17	2.8	17	81	9	55	56	12	0	32	1.36
30183752--30183793	17	2.5	17	84	3	50	71	4	0	23	1.05
30183749--30183796	25	1.9	25	91	8	80	72	4	0	22	1.01
30184472--30184525	26	2.1	26	96	0	99	33	12	3	50	1.59
30184507--30184533	14	1.9	14	100	0	54	22	22	7	48	1.75
30185507--30185569	29	2.1	30	85	2	83	47	14	4	33	1.65
30185692--30185745	25	2.2	25	100	0	108	55	12	3	27	1.54
30195597--30195715	60	2.0	60	96	0	220	33	12	10	42	1.78
30203228--30203300	33	2.2	34	82	2	85	24	21	26	27	2.00
30203269--30203328	28	2.1	28	81	0	66	23	28	26	21	1.99
30203673--30203828	27	5.8	27	87	2	190	25	21	19	33	1.97
30203675--30203827	81	1.9	80	87	1	225	24	20	20	34	1.96
30203822--30203918	27	3.6	27	87	0	122	35	7	19	38	1.79
30203687--30203855	81	2.1	81	80	2	187	26	19	18	34	1.95
30207910--30207972	33	1.9	33	83	6	83	22	23	25	28	1.99
30208163--30208236	27	2.7	27	82	10	80	35	20	21	22	1.96
30208365--30208519	27	5.8	27	85	1	188	25	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30208513--30208608	26	3.7	26	82	1	102	28	9	22	39	1.85
30208527--30208606	26	3.1	26	87	7	110	26	7	25	41	1.81
30215314--30215384	35	2.0	35	100	0	142	43	14	25	16	1.86
30215922--30215963	21	2.0	21	100	0	84	47	14	14	23	1.80
30221236--30221281	22	2.0	24	84	16	62	39	6	0	54	1.26
30225660--30225918	47	5.5	46	73	12	208	21	29	20	28	1.98
30228082--30228115	16	2.1	16	100	0	68	29	8	11	50	1.69
30243423--30243510	44	2.0	44	95	0	158	30	18	13	37	1.89
30248271--30248419	28	5.4	28	97	0	266	32	29	13	24	1.93
30256444--30256597	28	5.5	28	96	0	247	31	28	13	25	1.94
30260142--30260473	48	6.9	48	81	2	380	27	18	28	25	1.98
30260142--30260473	96	3.4	96	88	1	477	27	18	28	25	1.98
30274032--30274398	48	7.7	47	77	7	337	27	17	28	26	1.98
30274046--30274463	144	2.9	145	77	8	343	27	17	28	26	1.98
30274032--30274458	96	4.4	96	82	3	475	28	17	28	25	1.97
30276525--30276596	36	2.0	36	97	0	135	37	13	12	36	1.83
30277754--30277870	42	2.8	41	82	3	117	41	18	11	28	1.85
30277949--30278541	292	2.0	292	95	0	1060	34	13	17	35	1.88
30283420--30283464	23	2.0	23	95	0	81	48	11	0	40	1.39
30283422--30283471	23	2.2	23	88	0	73	54	10	0	36	1.34
30284912--30284951	19	2.1	19	95	0	71	32	30	7	30	1.85
30295461--30295705	125	2.0	125	94	0	427	34	8	20	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30302745--30302913	43	3.9	43	71	13	132	23	19	28	27	1.98
30314419--30314464	21	2.2	21	84	0	56	41	21	0	36	1.54
30319764--30319813	20	2.5	20	86	3	73	22	34	28	16	1.95
30327851--30328092	43	5.6	43	82	4	231	31	25	16	26	1.96
30327869--30328092	86	2.6	86	83	4	265	32	25	15	26	1.96
30327838--30328090	129	2.0	129	84	1	328	31	25	16	26	1.96
30329416--30329598	43	4.3	43	77	6	174	26	17	24	32	1.97
30336888--30336923	18	2.0	18	94	0	63	52	5	11	30	1.59
30338549--30338632	27	3.2	26	86	5	105	33	21	25	20	1.97
30348384--30349015	47	13.4	47	94	0	1048	29	29	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349