Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  324  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107879655--107879714
21
2.9
21
70
9
50
25
1
35
38
1.66
107882139--107883070
137
6.8
138
74
11
484
31
6
24
37
1.82
107882087--107883256
206
5.7
205
87
4
1101
31
7
24
37
1.82
107882099--107883256
23
50.6
23
77
9
908
31
7
24
37
1.82
107882099--107883255
229
5.1
229
87
4
1344
31
7
24
37
1.82
107884088--107884200
42
2.7
42
90
0
163
26
30
16
26
1.97
107884171--107884230
29
2.0
30
83
3
77
25
30
15
30
1.95
107885539--107885583
22
2.1
22
84
8
58
53
2
0
44
1.13
107885676--107885732
15
3.5
15
71
17
51
49
1
1
47
1.22
107886190--107886228
14
2.8
14
84
11
53
33
17
7
41
1.79
107886443--107886577
72
1.9
72
85
0
189
40
8
9
42
1.67
107889670--107889713
21
2.1
21
95
4
81
54
4
6
34
1.47
107889684--107889724
11
3.9
11
78
12
50
53
7
2
36
1.42
107889648--107889749
47
2.2
47
81
10
122
58
3
3
33
1.35
107889783--107889835
19
2.7
20
88
8
72
56
7
1
33
1.38
107889748--107889875
59
2.1
59
80
11
145
55
10
1
32
1.44
107889838--107889917
25
3.0
25
81
10
79
53
6
6
33
1.51
107889831--107889919
27
3.2
26
80
15
83
53
5
5
34
1.48
107890408--107890507
10
9.2
11
70
22
52
59
3
4
34
1.32
107890465--107890507
21
2.1
19
83
12
50
67
0
2
30
1.03
107892208--107892242
14
2.6
14
90
4
54
51
5
14
28
1.65
107892297--107892332
15
2.5
14
91
8
63
61
8
8
22
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107892088--107892408
88
3.6
89
86
3
441
37
19
15
26
1.93
107896535--107896648
43
2.7
42
82
5
140
31
15
23
28
1.96
107897025--107897111
24
3.6
23
77
13
93
31
12
11
44
1.78
107897012--107897087
24
3.0
26
74
14
95
30
17
10
42
1.82
107897012--107897114
50
2.1
50
98
0
197
31
15
11
41
1.83
107903205--107903234
7
4.3
7
100
0
60
30
0
0
70
0.88
107905138--107905197
31
1.9
31
82
0
75
26
5
10
58
1.51
107908028--107908125
35
2.7
37
87
12
150
37
10
16
35
1.82
107908028--107908118
19
4.9
19
92
8
161
37
10
15
36
1.83
107908028--107908141
19
5.8
22
87
10
96
36
9
15
37
1.81
107910574--107910621
17
2.8
17
78
15
53
75
2
0
22
0.91
107911088--107911258
87
2.0
86
80
10
195
34
9
17
38
1.83
107913481--107913513
17
1.9
17
88
11
50
21
6
6
66
1.35
107914226--107914486
124
2.1
127
84
4
350
35
14
14
36
1.86
107914805--107914946
3
48.3
3
66
18
59
62
4
5
27
1.36
107915838--107915882
20
2.2
20
88
0
63
75
4
11
8
1.17
107918963--107919029
21
3.2
21
74
16
59
47
13
0
38
1.43
107919000--107919046
24
2.0
24
84
16
62
48
17
0
34
1.47
107919674--107919719
16
2.9
16
78
15
51
2
32
0
65
1.05
107919707--107919745
20
2.0
20
84
0
51
2
28
5
64
1.28
107919767--107919808
5
8.4
5
100
0
84
59
0
0
40
0.97
107923396--107923607
46
4.9
39
76
19
183
37
16
23
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107923438--107923651
46
4.7
46
86
0
266
41
15
22
21
1.90
107923386--107923651
138
2.0
130
83
5
334
39
15
22
22
1.91
107925305--107925347
21
2.0
21
100
0
86
18
20
18
41
1.90
107926895--107926937
19
2.1
21
87
8
63
37
9
16
37
1.81
107934395--107934437
21
2.0
21
100
0
86
32
18
9
39
1.83
107937449--107937486
18
2.1
18
95
0
67
42
50
0
7
1.31
107937463--107937487
13
1.9
13
100
0
50
40
48
0
12
1.40
107937552--107937610
9
6.6
9
86
0
82
27
8
18
45
1.78
107942549--107942583
12
2.8
12
95
4
61
74
2
0
22
0.95
107942807--107942831
13
1.9
13
100
0
50
72
4
0
24
1.02
107943026--107943056
3
10.3
3
100
0
62
67
0
0
32
0.91
107944219--107944250
14
2.3
14
100
0
64
28
15
37
18
1.92
107944803--107945000
45
4.3
44
70
14
150
28
21
16
33
1.95
107944757--107945474
138
5.2
140
73
11
478
28
20
17
32
1.96
107944796--107945101
89
3.4
88
76
10
269
28
20
17
33
1.96
107944941--107945046
44
2.4
44
83
1
122
28
26
16
28
1.97
107945162--107945875
86
7.9
86
75
10
602
28
21
17
32
1.96
107944757--107945887
182
6.2
182
83
6
1209
28
20
17
32
1.96
107947387--107947434
6
7.8
6
81
4
51
8
6
2
83
0.88
107952339--107952363
13
1.9
13
100
0
50
72
4
0
24
1.02
107952556--107952580
6
4.2
6
100
0
50
68
0
0
32
0.90
107952773--107952808
14
2.5
15
90
4
56
83
0
11
5
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107955409--107955444
17
2.1
18
89
5
56
61
16
2
19
1.47
107956942--107956967
3
8.7
3
100
0
52
34
0
0
65
0.93
107969035--107969259
45
5.1
44
77
8
190
33
16
20
29
1.95
107969487--107969520
18
1.9
17
94
5
59
64
26
0
8
1.22
107970964--107970994
3
10.3
3
100
0
62
35
0
0
64
0.94
107974004--107974191
104
1.8
104
85
2
270
39
21
16
22
1.92
107973982--107974191
53
4.0
53
80
4
201
40
21
15
22
1.90
107973971--107974192
27
8.4
27
75
4
164
39
21
17
22
1.92
107973982--107974191
104
2.0
104
84
4
269
40
21
15
22
1.90
107989830--107989870
10
4.4
9
88
8
57
68
2
7
21
1.26
107991499--107991608
26
4.2
26
96
2
186
34
3
24
37
1.73
107993225--107993363
27
5.2
27
86
4
174
17
23
23
35
1.96
107993225--107993363
54
2.6
54
87
4
192
17
23
23
35
1.96
107997770--107997830
24
2.5
23
82
12
70
54
3
13
29
1.55
107997953--107998068
44
2.6
44
82
9
139
58
2
2
36
1.26
107997961--107998117
22
7.4
21
71
22
91
57
3
2
35
1.30
107997976--107998072
14
6.0
16
68
25
62
57
3
2
37
1.26
107998043--107998110
27
2.7
23
75
18
64
57
4
1
36
1.28
107998055--107998141
24
3.6
24
76
10
88
56
5
1
36
1.31
107998270--107998303
17
2.1
16
94
5
59
52
11
0
35
1.38
107998305--107998467
3
53.7
3
66
18
61
59
3
6
31
1.37
108010271--108010330
28
2.1
29
81
9
70
50
5
8
36
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108010524--108010612
20
4.2
20
81
14
81
57
3
3
35
1.32
108010509--108010624
44
2.6
44
84
9
148
57
2
3
36
1.29
108010511--108010612
21
4.8
21
77
16
93
56
2
3
36
1.33
108010532--108010673
11
12.1
11
70
23
69
58
4
2
35
1.29
108010638--108010699
22
2.7
23
80
7
72
56
6
1
35
1.35
108010568--108010669
12
8.4
12
69
18
77
59
3
0
35
1.22
108010619--108010697
24
3.2
24
75
12
81
56
6
1
35
1.32
108010820--108010853
17
2.1
16
94
5
59
52
11
0
35
1.38
108010855--108011017
3
53.7
3
67
16
77
60
3
5
31
1.35
108012336--108012431
21
4.5
21
88
2
120
36
26
22
14
1.93
108012336--108012444
42
2.5
42
83
2
146
35
24
22
16
1.95
108012815--108012872
15
3.8
15
88
2
89
51
12
0
36
1.39
108014130--108014159
5
6.0
5
100
0
60
60
0
0
40
0.97
108014182--108014210
8
3.6
8
100
0
58
62
0
0
37
0.96
108015456--108015498
16
2.7
16
88
0
68
11
4
37
46
1.61
108017130--108017163
9
3.7
9
92
4
50
23
41
0
35
1.55
108019788--108019935
39
3.8
39
88
1
199
27
26
20
25
1.99
108024919--108024971
23
2.3
23
83
6
63
56
26
1
15
1.49
108032629--108032685
26
2.3
25
88
8
82
42
0
0
57
0.98
108032733--108032820
46
2.0
46
82
8
110
43
13
4
38
1.65
108040536--108040748
109
2.0
108
93
2
365
41
4
17
36
1.71
108044177--108044333
29
5.4
29
93
0
260
34
10
29
25
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108044326--108044489
33
5.0
33
79
1
177
34
9
20
35
1.86
108044327--108044535
98
2.1
99
78
6
237
36
11
22
30
1.89
108046897--108046973
28
2.8
28
85
0
109
38
9
22
29
1.85
108047046--108047307
39
6.7
39
90
1
346
19
21
28
30
1.97
108052944--108053205
39
6.7
39
95
1
418
17
22
30
28
1.97
108058659--108058907
41
6.1
41
89
1
356
37
24
20
16
1.93
108058920--108059033
54
2.1
54
83
3
140
50
29
0
20
1.49
108063443--108063473
11
2.8
11
100
0
62
0
0
35
64
0.94
108064586--108064688
43
2.4
43
86
3
136
22
18
25
33
1.96
108080382--108080428
25
1.9
24
87
12
69
70
2
10
17
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349