genome.fa.s1.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  126  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40172551--40172584	14	2.4	14	100	0	68	41	8	32	17	1.80
40173843--40174234	198	2.0	198	95	0	703	39	8	16	34	1.80
40175954--40176001	11	4.6	10	82	7	51	68	8	8	14	1.37
40179217--40179295	41	1.9	41	97	0	149	32	18	12	35	1.89
40179217--40179283	22	3.2	22	67	26	63	32	20	11	34	1.90
40180680--40180817	48	2.9	48	86	2	179	25	29	18	26	1.98
40183274--40183423	67	2.2	67	81	8	171	32	17	28	21	1.96
40183298--40183481	67	2.8	64	77	8	194	29	17	29	22	1.97
40190691--40190958	144	1.8	145	88	6	418	26	29	17	25	1.98
40190684--40190973	48	6.0	48	80	3	269	28	29	17	24	1.97
40193704--40193746	16	2.8	15	86	6	59	20	0	2	76	0.89
40193703--40193747	14	3.1	14	82	17	56	24	0	2	73	0.95
40195568--40195638	24	2.9	24	78	4	70	21	22	19	36	1.95
40207311--40207500	53	3.6	53	80	6	183	35	17	24	22	1.96
40207311--40207510	49	3.8	53	81	5	212	36	17	24	22	1.95
40207701--40207731	16	1.9	16	93	0	53	41	0	22	35	1.54
40207802--40207829	14	2.0	14	100	0	56	35	7	14	42	1.73
40211340--40211397	27	2.1	27	100	0	116	25	15	18	39	1.91
40212619--40212652	17	1.9	18	88	5	52	50	5	5	38	1.51
40224580--40224604	7	3.6	7	100	0	50	32	0	52	16	1.44
40227288--40227586	144	2.1	143	81	8	342	35	9	3	51	1.52
40230329--40230632	47	6.4	47	91	1	437	27	29	8	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40241798--40241879	26	3.2	26	100	0	164	35	26	7	30	1.84
40243424--40243657	128	1.8	128	83	1	308	29	19	15	35	1.93
40244921--40245067	52	2.8	52	90	0	222	17	32	29	20	1.96
40246905--40246942	20	1.9	20	88	0	58	44	15	5	34	1.69
40250216--40250270	28	1.9	28	85	10	76	20	38	20	21	1.94
40262893--40262962	34	2.1	34	100	0	140	22	27	20	30	1.98
40274723--40275025	48	6.3	48	92	1	482	33	5	28	33	1.80
40275151--40275251	37	2.8	37	95	3	179	22	20	31	24	1.98
40277055--40277096	22	2.1	19	86	13	57	52	0	2	45	1.13
40279080--40279400	50	6.7	49	76	11	274	28	19	28	23	1.99
40279074--40279400	145	2.3	145	84	7	416	28	19	28	23	1.98
40284845--40284909	24	2.7	24	92	0	103	26	16	18	38	1.92
40284927--40284983	23	2.5	22	80	5	69	24	22	17	35	1.95
40284843--40284981	24	6.0	23	74	7	95	23	20	18	37	1.94
40285349--40285399	26	2.0	26	84	3	68	64	3	0	31	1.11
40285361--40285409	26	2.0	24	88	8	71	63	6	0	30	1.19
40287091--40287190	40	2.6	38	82	3	128	13	13	37	37	1.83
40297672--40297706	6	5.8	6	86	0	52	77	0	5	17	0.96
40302235--40302308	37	2.0	37	97	0	139	22	21	17	37	1.94
40304273--40304450	40	4.5	40	88	6	247	24	28	23	24	2.00
40307152--40307204	26	2.0	26	100	0	106	41	3	22	32	1.72
40308994--40309172	89	2.0	89	89	4	272	34	15	16	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40317403--40317516	27	4.3	27	86	2	158	25	22	19	32	1.97
40317474--40317573	27	3.7	27	86	2	130	26	12	23	39	1.89
40317474--40317635	54	3.0	55	80	3	150	26	11	22	40	1.87
40317619--40317680	27	2.3	27	91	0	97	37	6	20	35	1.79
40317685--40317779	27	3.5	27	81	5	111	28	7	22	42	1.80
40318847--40318936	24	3.7	25	75	12	89	25	23	16	34	1.95
40318927--40318985	23	2.6	22	86	5	91	28	25	15	30	1.96
40325293--40325362	25	2.8	25	88	0	104	24	22	27	25	2.00
40326171--40326235	27	2.4	27	82	5	78	21	24	18	35	1.96
40338231--40338255	8	3.1	8	100	0	50	24	0	0	76	0.80
40338710--40338748	17	2.3	17	90	0	60	25	2	2	69	1.14
40342239--40342320	40	2.0	40	88	4	121	48	14	2	34	1.57
40346645--40346682	18	2.1	18	85	9	51	18	13	0	68	1.21
40353078--40353111	17	2.0	17	100	0	68	29	47	5	17	1.71
40356301--40356361	30	2.0	30	83	0	77	31	22	8	37	1.84
40357184--40357213	15	2.0	15	100	0	60	26	26	26	20	1.99
40357373--40357493	42	2.9	41	82	7	154	28	25	14	30	1.95
40364945--40365062	43	2.8	41	79	7	137	30	22	16	31	1.95
40366399--40366454	24	2.3	24	81	0	67	48	3	32	16	1.63
40371039--40371108	27	2.6	27	86	0	95	24	27	15	32	1.95
40371160--40371244	27	3.1	27	78	6	91	25	27	11	35	1.91
40375179--40375340	43	3.8	43	76	11	145	30	24	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40392248--40392398	40	3.8	40	85	3	189	23	24	29	23	1.99
40400301--40400449	40	3.8	40	86	3	185	22	24	30	22	1.99
40418853--40418970	27	4.4	27	73	14	82	29	23	10	36	1.88
40429946--40429994	21	2.3	21	96	0	89	20	42	24	12	1.86
40439745--40439802	30	1.9	30	92	0	98	29	3	13	53	1.56
40439885--40439924	18	2.2	18	86	8	55	20	0	12	67	1.22
40454396--40454494	24	4.3	23	71	20	82	37	18	23	21	1.94
40454980--40455040	27	2.2	27	82	11	70	29	19	1	49	1.58
40456900--40456938	19	2.1	19	90	0	60	23	12	28	35	1.91
40458848--40459134	48	6.0	48	75	1	243	25	27	19	26	1.99
40458855--40459181	96	3.4	95	87	0	438	25	26	19	28	1.99
40458917--40459176	48	5.4	48	72	9	215	26	26	18	28	1.98
40462003--40462039	19	1.9	19	88	0	56	16	32	18	32	1.93
40462137--40462185	8	6.1	8	83	9	64	6	22	22	48	1.72
40462137--40462185	24	2.0	24	92	0	80	6	22	22	48	1.72
40465293--40465597	47	6.4	47	91	2	439	34	8	29	27	1.86
40465366--40465441	24	3.2	24	63	20	59	32	9	32	25	1.87
40465293--40465604	142	2.2	143	87	2	421	34	8	29	27	1.87
40468023--40468097	38	2.0	38	86	5	107	30	18	26	24	1.98
40468151--40468418	40	6.7	40	91	0	421	24	22	27	25	2.00
40471768--40472071	47	6.4	47	91	1	437	34	8	29	27	1.86
40477633--40477791	42	3.6	42	80	12	203	29	26	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40477590--40477826	90	2.6	90	95	0	420	28	27	18	26	1.98
40477590--40477826	48	5.2	48	75	15	250	28	27	18	26	1.98
40480353--40480441	46	1.9	46	86	0	124	22	31	11	34	1.89
40480457--40480701	47	5.2	47	93	0	409	26	28	11	34	1.90
40480529--40480606	25	3.2	25	68	23	76	30	26	8	33	1.87
40480601--40480672	22	3.1	22	64	24	58	23	29	13	33	1.93
40495712--40495738	13	2.1	13	100	0	54	22	37	0	40	1.54
40497408--40497449	22	2.1	19	86	13	57	52	0	2	45	1.13
40508599--40508674	39	1.9	39	91	0	125	27	27	19	25	1.99
40508612--40508743	40	3.3	39	88	1	165	25	24	21	28	1.99
40516513--40516636	35	3.3	37	80	11	117	24	25	23	27	2.00
40516436--40516653	39	5.7	40	77	9	150	24	25	23	26	2.00
40520579--40520776	27	7.3	27	86	0	252	28	23	8	39	1.84
40520579--40520776	81	2.4	81	91	0	306	28	23	8	39	1.84
40520808--40520904	27	3.6	27	83	4	124	40	22	9	27	1.85
40520808--40520989	27	6.7	27	77	9	84	41	19	7	31	1.80
40520808--40520988	54	3.3	53	78	10	136	41	19	7	30	1.80
40521737--40521784	25	1.9	25	86	0	69	35	22	14	27	1.93
40521820--40521886	20	3.3	20	89	4	100	40	10	17	31	1.84
40521936--40522058	52	2.4	51	91	5	196	25	22	23	28	1.99
40521936--40522058	26	4.8	26	86	1	160	25	22	23	28	1.99
40522167--40522258	42	2.2	42	90	0	139	31	13	19	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40522282--40522360	31	2.5	31	95	0	140	30	18	25	25	1.98
40523948--40524035	45	2.0	45	88	0	131	25	11	23	39	1.88
40526611--40526789	48	3.7	47	81	3	162	25	26	18	28	1.98
40526658--40526796	48	2.9	47	82	4	170	23	27	19	30	1.98
40531025--40531073	25	2.0	25	87	0	71	32	10	20	36	1.86
40536916--40536957	18	2.3	18	84	8	50	19	28	38	14	1.90
40538736--40538775	21	1.9	21	84	0	53	42	15	15	27	1.86
40539590--40539800	46	4.6	46	79	5	162	17	18	16	47	1.82
40539634--40539942	45	6.8	45	76	6	187	19	18	17	44	1.87
40539768--40539968	45	4.5	45	78	6	142	21	19	18	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349