Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  340  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112440207--112440274
26
2.6
26
95
4
120
36
7
16
39
1.76
112451472--112451525
27
2.0
28
85
3
74
55
1
0
42
1.10
112453454--112453487
17
2.0
17
94
0
59
50
5
5
38
1.51
112457343--112457481
69
2.0
69
98
0
269
32
28
4
35
1.77
112462567--112462596
15
2.0
15
93
0
51
50
0
10
40
1.36
112462625--112462652
10
2.8
10
100
0
56
32
7
0
60
1.24
112471454--112471531
38
2.1
38
90
0
120
17
28
17
35
1.94
112477769--112478369
83
7.2
83
92
0
945
28
18
18
34
1.95
112489800--112489840
21
2.0
21
85
9
57
58
9
9
21
1.59
112490390--112490442
24
2.4
22
75
9
54
64
1
5
28
1.27
112490575--112490619
19
2.4
19
82
10
56
62
0
2
35
1.08
112490578--112490635
17
3.4
16
83
13
55
60
3
1
34
1.24
112490573--112490717
54
2.6
54
77
13
136
62
2
2
32
1.21
112495890--112495956
32
2.1
32
94
0
116
53
0
8
37
1.32
112509703--112509756
23
2.5
23
82
8
60
61
9
0
29
1.27
112509703--112509750
23
2.1
23
84
3
62
62
10
0
27
1.27
112509966--112510011
15
2.9
15
90
6
65
67
0
6
26
1.15
112509941--112510002
21
2.7
25
78
19
80
62
0
8
29
1.23
112509960--112510043
44
1.9
44
81
13
102
66
0
7
26
1.17
112509958--112510043
15
5.9
14
75
14
59
66
0
6
26
1.17
112511730--112511777
19
2.5
19
75
0
51
54
4
4
37
1.39
112514609--112514636
11
2.5
11
100
0
56
67
14
10
7
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112517116--112517145
3
10.0
3
100
0
60
33
0
0
66
0.92
112517361--112517421
31
2.0
31
90
0
95
36
9
9
44
1.71
112519086--112519143
29
2.0
29
100
0
116
48
13
10
27
1.75
112527593--112527630
6
6.5
6
81
6
51
15
0
5
78
0.91
112527593--112527630
17
2.2
18
90
4
60
15
0
5
78
0.91
112527593--112527630
11
3.4
11
89
7
58
15
0
5
78
0.91
112530160--112530220
29
2.1
29
93
0
104
32
14
11
40
1.82
112532666--112532722
30
1.9
30
82
10
73
29
10
12
47
1.74
112535812--112535856
17
2.7
16
79
6
54
44
2
11
42
1.52
112544651--112544689
15
2.7
15
88
4
53
53
2
7
35
1.43
112552570--112552634
12
5.3
12
81
18
73
16
0
0
83
0.66
112552571--112552635
20
3.2
20
86
4
87
18
0
0
81
0.69
112553587--112553817
118
2.0
118
92
0
390
22
15
31
30
1.95
112554612--112554659
20
2.5
20
86
3
62
27
4
4
64
1.30
112556787--112556865
29
2.8
28
77
7
79
15
8
2
73
1.18
112556927--112556970
22
1.9
24
90
9
74
38
0
0
61
0.96
112556970--112557039
23
3.1
21
78
13
68
41
0
1
57
1.08
112556939--112557000
32
1.9
33
93
3
108
32
0
1
66
1.02
112556974--112557023
23
2.1
24
88
3
75
34
0
2
64
1.05
112557531--112557591
22
2.9
22
75
20
67
59
0
0
40
0.98
112557541--112557591
19
2.7
19
84
6
68
62
0
0
37
0.95
112557555--112557579
13
1.9
13
100
0
50
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112557622--112557669
22
2.1
24
88
7
73
62
0
0
37
0.95
112557758--112557804
18
2.6
18
83
12
60
74
2
10
12
1.16
112557758--112557805
19
2.6
18
83
3
60
75
2
10
12
1.14
112558384--112558419
18
2.0
18
100
0
72
55
5
5
33
1.46
112560577--112560624
25
1.9
25
83
8
62
52
2
0
45
1.12
112565515--112565686
92
1.9
93
91
3
285
28
31
20
19
1.97
112565508--112565682
46
3.8
46
77
13
189
29
30
20
19
1.97
112565559--112565701
46
3.1
45
72
12
121
30
30
19
20
1.97
112569586--112569635
10
4.8
10
75
24
50
56
12
2
30
1.47
112569586--112569671
19
4.3
20
81
10
63
54
10
2
32
1.47
112569605--112569671
19
3.5
19
87
2
89
55
8
1
34
1.40
112570600--112570649
10
5.0
10
83
9
66
22
10
2
66
1.32
112572155--112572193
19
2.0
20
85
14
55
46
10
17
25
1.80
112573566--112573615
10
4.8
10
75
24
50
58
12
0
30
1.34
112573566--112573653
20
4.3
20
78
11
65
54
11
1
32
1.43
112573585--112573653
19
3.5
19
86
4
84
53
10
1
34
1.44
112573602--112573659
19
3.0
19
75
14
57
51
8
1
37
1.43
112573662--112573718
29
2.0
28
83
10
71
64
1
1
31
1.13
112573993--112574048
24
2.3
24
96
0
103
30
25
7
37
1.82
112576774--112576810
20
1.9
18
89
10
56
35
21
0
43
1.53
112579677--112579716
2
20.5
2
94
5
73
50
0
0
50
1.00
112580991--112581059
28
2.5
28
85
4
86
31
11
28
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112586809--112586850
21
2.0
21
100
0
84
28
9
9
52
1.65
112593122--112593164
9
4.7
9
82
5
59
46
30
0
23
1.52
112594788--112594832
18
2.4
19
85
14
58
37
0
2
60
1.09
112597252--112597356
37
2.9
37
92
1
176
34
4
14
46
1.65
112597293--112597353
17
3.4
17
68
12
50
34
3
11
50
1.55
112597364--112597468
9
11.7
9
88
4
131
22
15
21
40
1.91
112597364--112597468
27
3.9
27
88
2
149
22
15
21
40
1.91
112615511--112615541
10
3.0
10
95
4
53
0
12
0
87
0.55
112623228--112623274
18
2.6
17
80
9
58
25
4
2
68
1.19
112623203--112623274
36
2.0
36
84
13
94
22
5
4
68
1.28
112623264--112623357
21
4.1
24
70
19
67
40
0
2
57
1.11
112623575--112623629
13
4.3
13
72
9
51
14
5
1
78
1.02
112623575--112623651
36
2.1
38
83
9
97
18
3
3
74
1.13
112624097--112624194
10
10.4
9
69
16
65
51
2
1
45
1.19
112624087--112624149
29
2.2
29
91
2
101
55
3
0
41
1.16
112624127--112624172
19
2.4
19
82
13
58
41
2
2
54
1.25
112624165--112624252
31
2.7
33
80
18
103
53
1
1
44
1.15
112627694--112627816
30
4.1
30
88
0
174
29
28
19
22
1.98
112627694--112627816
60
2.0
60
90
0
192
29
28
19
22
1.98
112630807--112630854
16
2.8
18
75
15
57
39
0
0
60
0.97
112630948--112630991
22
2.1
21
84
16
56
61
0
2
36
1.09
112631112--112631181
25
2.6
27
80
11
81
45
1
2
50
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112631320--112631386
23
3.0
23
71
16
59
49
0
0
50
1.00
112631651--112631737
22
4.0
21
69
19
61
57
3
0
39
1.16
112631651--112631739
21
4.1
21
71
13
72
56
3
0
40
1.16
112631720--112631772
13
3.9
14
77
20
51
66
0
5
28
1.15
112634950--112635007
30
2.0
29
86
10
82
50
0
3
46
1.18
112634962--112635019
18
3.0
19
80
14
57
51
1
1
44
1.21
112637855--112637905
4
12.5
4
83
4
57
21
0
25
52
1.47
112638028--112638071
4
11.0
4
80
0
52
25
4
20
50
1.67
112645198--112645407
42
5.0
42
70
11
140
41
17
16
24
1.89
112645193--112645390
43
4.6
42
71
9
132
41
16
17
24
1.90
112645193--112645407
85
2.5
84
83
2
277
40
17
17
24
1.90
112645506--112645535
7
4.4
7
95
4
53
33
26
10
30
1.89
112646751--112646866
39
3.0
39
94
0
205
22
21
29
26
1.99
112646751--112646894
78
1.8
78
85
5
202
22
22
28
25
1.99
112650039--112650067
2
14.5
2
100
0
58
48
0
0
51
1.00
112651308--112651351
22
2.0
21
86
4
61
31
2
9
56
1.43
112655262--112655313
15
3.5
15
78
0
59
42
0
46
11
1.40
112655253--112655299
24
2.0
24
87
8
69
40
0
48
10
1.38
112655252--112655314
30
2.1
30
87
0
90
44
0
46
9
1.36
112658313--112658395
41
2.0
41
100
0
166
38
12
7
42
1.70
112664413--112664911
166
3.0
166
97
0
944
40
15
13
30
1.86
112669465--112669533
30
2.3
30
94
2
120
33
14
11
40
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112670727--112670762
12
2.8
14
80
20
51
63
0
0
36
0.94
112670897--112670939
20
2.2
19
83
4
50
4
30
4
60
1.37
112671828--112671879
20
2.5
20
84
3
59
55
1
36
5
1.35
112674707--112674741
3
11.7
3
100
0
70
31
0
0
68
0.90
112675207--112675251
24
1.9
23
90
4
72
37
2
0
60
1.09
112675237--112675290
22
2.4
23
75
3
56
33
9
5
51
1.57
112687563--112688076
50
10.3
49
75
9
405
34
21
18
26
1.96
112687567--112688067
150
3.3
150
81
7
518
33
21
18
26
1.96
112687570--112687930
100
3.6
100
97
0
661
34
21
17
26
1.95
112687563--112688028
200
2.3
200
86
6
658
33
21
19
26
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349