genome.fa.s1.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  117  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36796241--36796281	20	2.0	20	85	0	55	78	2	2	17	0.98
36796307--36796365	9	6.6	9	80	7	75	28	8	15	47	1.74
36818538--36818731	47	4.1	47	89	1	282	33	10	29	26	1.90
36818567--36818638	22	3.1	22	64	24	58	33	13	29	23	1.93
36818612--36818687	23	3.2	25	62	24	63	28	13	34	23	1.92
36818700--36818776	35	2.2	35	97	0	145	36	7	25	29	1.84
36818736--36818869	50	2.7	50	86	6	202	35	8	26	29	1.85
36818736--36818893	50	3.2	50	79	13	191	32	8	28	30	1.86
36819027--36819161	36	3.7	37	93	4	229	23	19	31	25	1.98
36820426--36820867	40	11.1	40	94	1	748	24	21	28	25	1.99
37049819--37050003	40	4.7	40	81	6	207	24	27	23	24	2.00
37049821--37050003	79	2.3	81	81	7	205	24	26	23	25	2.00
37058023--37058133	40	2.8	40	94	0	186	23	29	22	24	1.99
37058067--37058222	40	3.7	40	76	18	145	29	27	19	23	1.98
37067555--37067708	43	3.6	43	76	11	120	29	27	17	25	1.97
37067604--37067716	44	2.6	44	78	8	115	30	25	17	25	1.97
37084433--37084477	24	1.9	23	82	13	56	40	8	20	31	1.83
37094039--37094160	50	2.5	50	82	5	144	34	13	22	29	1.92
37097851--37097909	29	2.0	30	90	3	93	37	8	25	28	1.85
37100960--37101070	55	2.0	55	100	0	222	25	23	14	36	1.93
37105440--37105584	20	7.2	20	70	0	101	39	22	20	17	1.93
37105395--37105601	60	3.5	60	80	1	218	42	21	17	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37126590--37126790	47	4.2	47	92	2	321	34	12	27	24	1.92
37126666--37126742	22	3.4	22	70	22	77	35	14	27	23	1.93
37126666--37126787	22	5.3	22	65	30	67	35	13	27	24	1.92
37126590--37126787	96	2.1	95	91	1	317	34	12	27	25	1.92
37126806--37126896	46	2.0	46	91	0	146	34	7	30	27	1.85
37135997--37136032	5	6.8	5	87	12	54	16	0	0	83	0.65
37135995--37136033	12	3.4	12	86	13	64	15	0	0	84	0.62
37140027--37140200	46	3.8	46	79	10	192	21	19	28	29	1.98
37140022--37140191	93	1.8	93	90	0	277	22	20	28	29	1.98
37143161--37143210	15	3.4	15	86	2	66	10	18	12	60	1.59
37145741--37145963	40	5.6	40	86	4	288	24	23	26	25	2.00
37145741--37145963	82	2.8	80	87	6	292	24	23	26	25	2.00
37149025--37149200	46	3.8	46	75	10	169	21	19	28	30	1.97
37149022--37149191	93	1.8	93	88	0	259	22	20	28	29	1.98
37159051--37159234	100	1.8	100	90	2	298	26	17	25	29	1.98
37159052--37159239	49	3.8	49	80	4	225	27	17	25	29	1.97
37160834--37160913	40	2.0	40	100	0	160	35	22	5	37	1.76
37163364--37163396	15	2.2	15	100	0	66	33	30	0	36	1.58
37165621--37165646	13	2.0	13	100	0	52	61	0	0	38	0.96
37167951--37167997	24	2.0	23	87	8	67	70	2	21	6	1.20
37171225--37171267	17	2.4	18	88	11	63	32	6	9	51	1.61
37171373--37171414	5	8.4	5	84	10	50	23	2	2	71	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171601--37171655	14	3.7	14	86	11	74	34	16	0	49	1.46
37171608--37171656	16	3.2	16	91	5	75	30	16	0	53	1.43
37172128--37172166	16	2.5	15	84	8	51	33	0	2	64	1.08
37181747--37181803	17	3.4	17	72	18	64	42	7	0	50	1.29
37181733--37181808	34	2.2	34	100	0	152	42	5	0	52	1.24
37182408--37182509	50	2.0	50	86	3	143	41	11	15	31	1.83
37200735--37200820	42	2.0	42	95	0	154	26	17	20	34	1.95
37202288--37202325	11	3.5	11	89	7	60	21	7	0	71	1.11
37211744--37212256	256	2.0	256	99	0	1017	27	22	6	43	1.78
37214663--37214884	98	2.3	94	81	6	243	26	19	28	26	1.99
37214704--37214832	49	2.6	50	84	4	165	28	20	27	23	1.99
37218362--37218522	42	3.8	41	82	4	187	32	14	24	29	1.94
37218362--37218522	85	1.9	84	84	3	216	32	14	24	29	1.94
37222172--37222260	44	2.0	44	86	4	126	39	23	16	20	1.92
37223128--37223164	19	1.9	19	94	0	65	27	5	2	64	1.28
37229885--37229923	20	1.9	21	85	15	55	17	10	0	71	1.12
37230681--37230716	18	2.0	18	100	0	72	11	33	16	38	1.84
37241217--37241246	15	2.0	15	93	0	51	30	16	13	40	1.87
37248336--37248396	30	2.0	30	83	0	77	31	22	8	37	1.84
37250566--37250656	42	2.1	44	85	4	123	40	25	10	23	1.87
37250566--37250696	44	3.0	42	83	6	138	37	24	13	24	1.92
37255398--37255453	24	2.3	24	82	11	62	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37266568--37266613	23	2.0	24	83	12	60	56	10	0	32	1.34
37272430--37272456	3	9.0	3	100	0	54	66	0	0	33	0.92
37278199--37278266	30	2.3	30	84	2	84	35	2	7	54	1.43
37284763--37284792	15	2.0	15	100	0	60	46	13	20	20	1.83
37286513--37286543	16	1.9	16	93	0	53	29	0	3	67	1.06
37288950--37288995	20	2.3	21	82	14	62	26	17	28	28	1.98
37288986--37289124	60	2.3	60	82	6	165	29	19	24	26	1.98
37291948--37292012	28	2.3	28	94	0	112	33	27	7	30	1.85
37292118--37292207	27	3.2	27	81	10	94	18	22	24	34	1.96
37292128--37292218	27	3.2	28	78	7	78	20	24	20	34	1.97
37295965--37296052	44	2.0	44	84	4	115	29	28	19	22	1.98
37305669--37305694	12	2.2	12	100	0	52	50	0	15	34	1.45
37311304--37311370	27	2.5	27	87	4	91	29	20	20	28	1.98
37312128--37312194	34	2.0	34	90	0	107	29	19	13	37	1.90
37323030--37323077	24	2.0	24	91	0	78	37	12	18	31	1.88
37333648--37333830	79	2.3	80	83	7	221	26	28	21	23	1.99
37333627--37333830	40	5.1	40	80	8	229	25	28	21	24	1.99
37436921--37436992	20	3.3	20	65	20	54	16	22	33	27	1.95
37436825--37436996	93	1.9	92	90	1	272	20	20	30	27	1.98
37436830--37436995	46	3.6	46	76	17	164	21	21	30	27	1.98
37439943--37440007	15	4.4	15	77	9	71	10	15	13	60	1.60
37439939--37440007	30	2.3	30	82	7	88	10	14	17	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37442278--37442453	46	3.8	44	78	10	174	20	20	30	28	1.98
37442371--37442442	20	3.3	20	65	20	54	16	22	33	27	1.95
37442274--37442446	93	1.9	93	91	0	283	20	20	30	27	1.98
37448250--37448437	94	2.0	94	93	0	322	30	13	13	42	1.84
37458975--37459115	43	3.3	42	73	10	101	29	18	23	29	1.98
37485855--37485903	22	2.3	21	80	13	55	46	4	0	48	1.20
37488535--37488653	48	2.5	48	90	2	177	27	30	16	25	1.97
37491547--37491610	22	2.9	21	75	13	58	35	23	20	20	1.96
37491758--37491876	41	2.9	41	83	2	141	27	31	19	21	1.97
37492139--37492240	27	3.7	27	82	7	118	29	9	19	41	1.84
37492225--37492329	54	2.0	53	88	1	156	28	20	16	34	1.94
37492224--37492329	27	4.0	26	84	4	140	29	20	16	33	1.94
37503462--37503521	27	2.3	26	85	2	75	35	20	23	21	1.96
37503490--37503623	66	2.0	66	85	4	178	29	20	30	19	1.97
37504079--37504109	10	3.1	10	100	0	62	29	9	29	32	1.89
37504268--37504379	27	4.5	26	79	13	92	24	24	17	33	1.96
37504268--37504390	25	5.0	25	79	17	116	24	22	18	34	1.96
37504285--37504401	25	4.8	25	79	19	124	23	23	17	35	1.96
37510982--37511041	27	2.3	26	82	2	66	36	18	23	21	1.95
37511084--37511135	27	2.0	26	84	3	68	34	21	26	17	1.95
37513093--37513276	39	4.6	41	82	11	206	24	22	27	25	2.00
37513093--37513276	79	2.3	80	83	8	225	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37513146--37513309	78	2.1	79	83	7	201	26	21	27	25	1.99
37521007--37521191	79	2.3	81	83	7	227	24	22	27	24	2.00
37521008--37521191	40	4.6	40	82	9	207	25	22	27	24	2.00
37521060--37521224	79	2.1	79	83	6	201	26	21	27	24	1.99
37522837--37522941	54	1.9	54	92	0	174	24	18	20	36	1.95
37522824--37522942	27	4.4	27	83	0	139	24	19	20	36	1.95
37526509--37526533	13	1.9	13	100	0	50	36	0	8	56	1.29
37527626--37527850	48	4.7	48	84	2	263	30	18	23	27	1.98
37529262--37529688	212	2.0	212	99	0	845	26	12	21	39	1.89
37530527--37530834	160	1.9	160	92	0	517	30	12	25	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349