Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  320  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106857227--106857383
63
2.5
63
75
2
154
45
16
20
17
1.86
106860448--106860492
2
22.5
2
100
0
90
51
0
48
0
1.00
106860637--106860766
58
2.2
58
79
2
145
23
20
12
43
1.85
106872478--106872718
69
3.5
68
79
8
240
26
20
16
36
1.93
106876678--106876702
10
2.5
10
100
0
50
92
0
8
0
0.40
106880206--106880244
18
2.2
18
86
9
53
66
2
7
23
1.30
106882885--106882922
20
1.9
20
84
10
51
36
5
13
44
1.66
106884821--106885095
27
10.1
27
81
1
237
41
21
16
21
1.90
106884821--106885025
82
2.5
81
85
5
263
42
23
14
19
1.87
106884821--106885098
81
3.4
81
80
6
276
41
20
16
21
1.91
106885255--106885290
17
2.1
17
94
0
63
30
33
25
11
1.90
106893949--106894040
45
2.0
45
91
0
148
32
7
28
31
1.85
106894252--106894359
52
2.1
52
100
0
216
34
12
20
32
1.91
106905296--106905338
22
1.9
23
85
4
61
18
18
9
53
1.70
106907197--106907246
20
2.5
20
83
3
64
52
12
10
26
1.70
106940945--106941035
46
2.0
46
87
4
132
29
28
20
20
1.98
106945953--106946104
67
2.3
67
82
9
184
32
17
28
21
1.95
106948930--106948986
28
2.0
28
96
0
105
29
7
29
33
1.84
106952499--106952526
13
2.2
13
100
0
56
60
0
0
39
0.97
106952530--106952567
20
1.9
20
89
10
60
73
0
15
10
1.09
106952540--106952623
31
3.2
25
74
19
80
70
2
22
4
1.18
106952539--106952623
10
7.9
10
70
17
55
70
2
22
4
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106954720--106954756
19
1.9
19
94
0
65
18
16
35
29
1.93
106954663--106954802
65
2.1
66
90
1
219
19
20
30
29
1.97
106956347--106956403
28
2.0
28
96
0
105
24
10
29
35
1.89
106956457--106956506
19
2.6
19
96
0
91
18
34
32
16
1.92
106959730--106959930
77
2.7
75
84
6
246
40
20
5
33
1.75
106960016--106960133
37
3.1
37
73
15
98
69
0
3
27
1.04
106960064--106960159
29
3.4
28
78
14
92
63
0
7
29
1.21
106960342--106960368
13
2.1
13
100
0
54
37
0
22
40
1.54
106960373--106960433
18
3.4
17
73
10
50
29
3
1
65
1.18
106961939--106962001
30
2.1
30
91
5
101
25
4
11
58
1.51
106967674--106967729
21
2.7
21
78
10
55
39
1
0
58
1.08
106967683--106967728
21
2.1
22
84
8
58
34
2
0
63
1.07
106989986--106990037
24
2.2
24
85
0
68
53
9
3
32
1.51
106994193--106994226
17
2.0
17
88
11
52
50
0
0
50
1.00
106994197--106994235
19
2.1
18
85
4
51
46
0
2
51
1.14
107002764--107002804
20
2.2
18
86
8
55
53
0
4
41
1.22
107003752--107003789
19
2.0
19
89
0
58
52
2
0
44
1.14
107006965--107007157
95
2.1
94
93
2
325
46
10
17
25
1.79
107011338--107011393
3
19.0
3
80
10
62
32
0
5
62
1.18
107012291--107012321
3
10.3
3
100
0
62
32
0
0
67
0.91
107014707--107014793
5
17.8
5
67
21
51
59
2
0
37
1.10
107014704--107014768
34
1.9
33
87
3
94
60
1
0
38
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107014747--107014773
8
3.4
8
100
0
54
74
0
0
25
0.83
107018214--107018257
22
1.9
22
86
9
61
2
15
11
70
1.26
107034204--107034471
137
1.9
138
82
3
335
31
27
22
18
1.97
107036456--107036588
66
2.0
66
97
0
248
27
18
15
39
1.90
107036830--107036863
17
1.9
18
88
5
52
50
23
14
11
1.76
107038584--107038620
19
1.9
19
94
0
65
40
8
21
29
1.82
107042668--107042877
39
5.4
39
94
0
375
22
28
20
28
1.98
107054019--107054083
22
3.0
22
78
10
55
18
13
20
47
1.82
107056636--107056664
14
2.0
15
93
6
51
20
6
17
55
1.65
107056780--107056908
50
2.5
51
88
5
190
36
16
21
25
1.94
107056884--107057054
31
5.8
31
78
14
191
28
18
28
24
1.98
107057075--107057196
47
2.6
47
85
1
156
29
14
26
29
1.95
107058861--107058901
17
2.4
17
88
8
57
68
0
31
0
0.90
107058861--107058901
6
7.2
6
83
10
59
68
0
31
0
0.90
107059054--107059096
21
2.1
20
82
4
50
41
2
18
37
1.63
107060454--107060479
13
2.0
13
100
0
52
23
30
30
15
1.95
107074517--107074583
19
3.5
19
70
11
57
16
10
0
73
1.10
107076229--107076254
2
13.0
2
100
0
52
50
0
0
50
1.00
107084238--107084283
22
2.1
22
100
0
92
63
0
17
19
1.32
107091673--107091726
21
2.6
21
87
0
81
27
7
35
29
1.84
107094956--107094998
17
2.4
18
80
7
61
53
0
4
41
1.21
107094986--107095022
18
2.1
17
90
5
56
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107095969--107095994
6
4.3
6
100
0
52
19
19
15
46
1.85
107103694--107103765
5
14.8
5
91
5
121
43
0
0
56
0.99
107103663--107103705
17
2.4
18
80
7
61
53
0
4
41
1.21
107104725--107104750
6
4.3
6
100
0
52
19
19
15
46
1.85
107109945--107110009
34
2.0
34
81
6
80
32
26
15
26
1.95
107111859--107111966
26
4.2
26
93
0
189
36
24
7
32
1.83
107119612--107119719
26
4.2
26
93
0
189
36
24
7
32
1.83
107122458--107122506
20
2.4
21
76
10
57
26
0
0
73
0.83
107122457--107122505
14
3.6
14
79
12
50
26
0
0
73
0.83
107122459--107122507
25
2.0
24
84
11
64
28
0
0
71
0.86
107128414--107128445
5
6.8
5
86
13
50
40
0
21
37
1.54
107128415--107128442
13
2.2
13
100
0
56
39
0
21
39
1.54
107130737--107130785
25
2.0
25
95
0
89
32
14
4
48
1.62
107137226--107137268
23
1.9
22
90
4
68
23
0
4
72
1.04
107137226--107137268
11
3.8
11
84
9
52
23
0
4
72
1.04
107137288--107137390
8
11.4
8
71
22
55
31
4
1
62
1.27
107137343--107137375
17
1.9
17
88
11
50
27
3
0
69
1.03
107146392--107146420
5
5.8
5
100
0
58
41
0
17
41
1.49
107149083--107149146
26
2.4
26
81
5
74
29
26
14
29
1.95
107149251--107149355
27
3.9
26
83
5
120
20
23
20
36
1.95
107153121--107153155
5
7.4
5
93
6
56
42
0
0
57
0.99
107153133--107153211
3
27.7
3
70
19
53
35
0
5
59
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107153447--107153540
33
2.6
37
74
22
92
43
1
4
51
1.28
107153686--107153735
22
2.4
20
81
12
64
76
4
6
14
1.13
107154809--107154912
45
2.3
45
80
12
133
21
19
19
40
1.92
107154896--107154930
18
1.9
18
88
0
52
17
25
17
40
1.90
107155342--107155385
20
2.2
20
100
0
88
13
4
18
63
1.46
107155350--107155393
20
2.2
20
91
0
70
20
4
15
59
1.54
107162697--107162734
19
2.0
19
90
10
60
55
5
2
36
1.37
107167641--107167680
18
2.2
18
86
8
55
67
12
0
20
1.22
107171419--107171506
23
3.9
22
71
16
63
38
17
20
23
1.93
107171414--107171482
22
3.1
22
81
10
70
40
21
17
20
1.91
107171431--107171526
45
2.1
46
81
11
108
36
18
20
23
1.95
107171441--107171553
24
4.7
25
77
14
89
36
18
20
24
1.95
107172678--107172703
6
4.3
6
100
0
52
19
15
15
50
1.79
107172748--107172783
18
1.9
19
94
5
65
36
8
5
50
1.56
107180663--107180721
26
2.2
26
79
8
66
52
0
6
40
1.28
107182606--107182657
24
2.2
24
85
0
68
53
9
3
32
1.51
107183479--107183506
7
4.0
7
100
0
56
14
0
0
85
0.59
107186593--107186651
29
2.0
30
83
3
75
50
15
5
28
1.65
107186975--107187029
26
2.1
26
83
6
67
38
7
20
34
1.80
107187212--107187308
33
2.8
35
72
20
89
51
1
2
45
1.19
107187247--107187327
33
2.7
30
76
16
78
50
1
1
46
1.17
107192034--107192094
20
3.0
21
68
20
58
29
4
3
62
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107195560--107195597
19
2.0
19
94
0
67
60
5
13
21
1.52
107196714--107196742
12
2.3
13
94
5
51
65
6
27
0
1.18
107197745--107197802
18
3.4
17
77
13
57
27
6
5
60
1.44
107198046--107198135
27
3.3
27
72
17
71
34
10
4
51
1.56
107198239--107198271
3
11.0
3
93
0
57
33
3
0
63
1.10
107198343--107198394
23
2.3
23
82
0
59
28
7
5
57
1.50
107205147--107205175
3
9.7
3
100
0
58
34
0
0
65
0.93
107208588--107208626
17
2.3
17
95
0
69
58
12
7
20
1.58
107214834--107214860
12
2.2
12
100
0
54
7
14
29
48
1.71
107214893--107215218
41
8.0
41
87
1
404
32
21
25
20
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349