genome.fa.s1.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  282  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94143196--94143345	53	2.8	53	81	3	167	22	19	18	40	1.92
94143168--94143360	27	7.2	27	79	2	156	23	18	18	39	1.92
94143396--94143423	12	2.3	12	100	0	56	17	32	32	17	1.94
94150891--94150928	18	2.1	18	85	9	51	21	26	13	39	1.89
94159188--94159215	14	2.0	14	100	0	56	50	21	0	28	1.49
94167474--94167571	27	3.5	28	86	5	119	31	28	14	25	1.95
94172413--94172518	40	2.6	40	74	3	95	27	18	27	26	1.98
94178472--94178783	46	6.6	49	70	11	154	26	18	29	24	1.98
94185893--94186070	27	6.6	27	83	3	205	26	15	28	29	1.96
94185894--94186049	82	1.9	81	88	3	233	26	15	28	29	1.96
94185890--94186070	82	2.2	81	83	2	229	27	15	27	29	1.96
94189682--94189900	46	4.6	45	75	13	183	24	27	19	28	1.99
94189736--94189997	46	5.6	44	72	19	151	22	29	18	29	1.98
94189678--94189994	140	2.2	143	80	12	359	23	28	19	28	1.98
94198207--94198313	37	2.9	37	95	0	187	26	31	18	23	1.97
94198440--94198593	48	3.2	48	91	2	247	31	27	6	33	1.82
94198564--94198662	47	2.1	47	86	0	135	27	30	11	31	1.91
94202587--94203182	40	14.8	40	93	2	962	25	28	21	24	1.99
94203102--94203168	23	3.2	23	60	24	56	23	26	23	25	2.00
94204441--94204549	37	2.9	37	95	0	191	26	31	19	22	1.98
94204686--94204814	48	2.8	48	93	6	216	31	27	6	34	1.81
94204738--94204883	47	3.1	45	81	8	143	29	28	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94208327--94208381	8	6.9	8	77	6	58	54	0	1	43	1.10
94218750--94218788	21	1.9	20	84	5	51	33	28	20	17	1.96
94220713--94220764	13	4.1	13	85	9	72	15	0	1	82	0.75
94220713--94220763	6	8.2	6	82	8	66	15	0	1	82	0.76
94220713--94220763	19	2.7	19	88	8	70	15	0	1	82	0.76
94220716--94220789	8	8.5	8	70	21	51	17	2	1	78	0.94
94225039--94225075	16	2.3	17	81	13	51	48	0	2	48	1.15
94225060--94225124	8	8.4	8	73	11	55	61	1	0	36	1.05
94225089--94225125	14	2.4	16	86	13	51	72	2	0	24	0.97
94226976--94227030	22	2.5	22	87	0	74	25	29	29	16	1.97
94227168--94227198	15	2.1	15	100	0	62	12	19	12	54	1.70
94227469--94227543	26	2.9	26	76	2	80	34	16	17	32	1.92
94227528--94227717	25	7.6	25	76	12	133	34	22	17	26	1.96
94227515--94227717	50	4.1	50	78	8	189	33	21	17	27	1.95
94239981--94240060	42	1.9	42	84	5	108	23	36	22	17	1.95
94243673--94243737	27	2.4	28	77	10	73	38	9	26	26	1.86
94254100--94254278	73	2.5	73	90	0	286	24	24	25	25	2.00
94255073--94255103	14	2.1	15	94	5	55	38	19	0	41	1.51
94255270--94255404	41	3.4	39	73	12	125	34	25	17	23	1.96
94256309--94256342	5	6.8	5	100	0	68	58	0	0	41	0.98
94256884--94256951	8	8.4	8	75	13	59	51	1	2	44	1.25
94272749--94272802	26	2.1	26	100	0	108	50	22	9	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94276294--94277061	48	15.9	48	75	7	622	25	27	18	28	1.98
94276297--94277061	145	5.3	145	94	0	1235	25	27	18	29	1.98
94277688--94277712	12	2.1	12	100	0	50	36	40	8	16	1.77
94285555--94285949	50	7.9	50	78	3	398	27	17	24	30	1.97
94285563--94285638	24	3.1	24	67	20	66	28	14	25	31	1.95
94285556--94285946	101	3.9	101	76	5	279	26	17	24	31	1.97
94285554--94285946	151	2.6	151	90	0	626	26	17	24	31	1.97
94286149--94286180	16	2.0	16	93	0	55	46	0	18	34	1.49
94288261--94288727	48	9.6	48	78	5	420	25	28	17	28	1.98
94288261--94288727	98	4.8	94	79	8	497	25	28	17	28	1.98
94288259--94288727	146	3.2	146	92	0	769	26	27	17	28	1.98
94288697--94288757	30	2.0	30	100	0	122	24	26	19	29	1.99
94293293--94293401	51	2.1	54	94	5	197	36	17	11	33	1.87
94294774--94294957	48	3.8	48	94	0	305	35	7	28	28	1.83
94294938--94294981	22	2.0	22	95	0	79	43	4	29	22	1.73
94294890--94295027	70	2.0	70	95	0	249	37	6	29	26	1.81
94294844--94295065	118	1.9	118	93	1	383	36	6	28	28	1.82
94294796--94295113	166	1.9	166	94	1	557	35	6	28	29	1.82
94294960--94295116	48	3.3	48	95	0	278	35	6	29	29	1.82
94295265--94295367	37	2.8	37	93	0	179	23	21	31	24	1.99
94300385--94300416	14	2.4	14	90	10	50	21	9	28	40	1.84
94300382--94300776	50	7.8	50	85	2	461	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94300429--94300794	151	2.4	150	85	0	381	25	16	27	29	1.97
94301332--94301688	180	2.0	180	86	2	502	39	8	18	33	1.81
94310238--94310294	27	2.1	27	87	6	80	35	14	28	22	1.93
94316436--94316565	43	3.1	42	77	8	138	54	12	15	17	1.71
94323332--94323362	14	2.2	14	94	0	53	74	3	0	22	0.96
94325318--94325381	27	2.3	29	75	5	69	31	9	17	42	1.81
94328450--94328576	28	4.5	28	86	3	155	33	25	11	29	1.91
94328450--94328577	29	4.5	29	87	2	163	33	25	11	28	1.91
94328449--94328577	57	2.3	57	86	2	179	33	26	11	28	1.91
94331604--94332043	48	9.3	48	92	3	741	36	5	27	30	1.81
94331742--94332019	89	3.0	89	90	7	457	35	5	27	30	1.80
94331604--94332019	185	2.2	185	93	3	697	36	6	27	30	1.81
94331604--94332043	233	1.9	233	95	0	799	36	5	27	30	1.81
94332184--94332282	37	2.7	37	96	0	180	24	21	30	24	1.99
94333570--94334077	40	12.9	40	90	2	785	18	20	31	28	1.97
94334241--94334291	25	2.0	25	81	7	59	35	13	29	21	1.92
94337899--94338336	48	9.3	48	93	4	741	36	5	26	31	1.79
94337899--94338336	142	3.1	142	93	3	760	36	5	26	31	1.79
94338477--94338570	36	2.7	36	90	6	140	24	20	29	25	1.99
94343544--94343814	40	6.8	40	93	1	465	29	20	27	22	1.98
94352382--94352654	40	6.8	40	93	0	447	29	20	27	23	1.98
94355995--94356024	9	3.3	9	95	0	51	60	0	10	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94359121--94359163	21	2.1	20	91	4	68	58	16	4	20	1.56
94359820--94359886	2	33.5	2	96	0	125	50	0	49	0	1.00
94363144--94363230	42	2.1	42	100	0	174	13	17	9	59	1.59
94369105--94369142	17	2.2	17	90	0	58	28	7	44	18	1.78
94371055--94371095	21	2.0	21	100	0	82	39	12	19	29	1.88
94381088--94381150	28	2.2	28	94	0	108	15	19	39	25	1.91
94392813--94392974	54	3.0	54	89	2	229	19	24	21	35	1.96
94392816--94392974	27	5.9	27	82	11	166	19	23	21	35	1.96
94392816--94392974	81	2.0	80	81	8	189	19	23	21	35	1.96
94394011--94394133	47	2.6	47	85	3	142	21	21	19	36	1.95
94394031--94394136	23	4.5	24	75	4	101	20	20	20	37	1.94
94394031--94394136	47	2.3	46	90	1	158	20	20	20	37	1.94
94395921--94395950	14	2.1	14	100	0	60	60	0	33	6	1.23
94396960--94397289	48	6.8	48	79	2	293	26	26	20	27	1.99
94396979--94397290	96	3.2	96	87	2	419	26	26	19	28	1.99
94407819--94407849	15	2.1	15	100	0	62	41	0	6	51	1.27
94408439--94408468	14	2.1	15	93	6	53	63	13	10	13	1.52
94413627--94413884	40	6.5	40	89	2	360	27	27	21	24	1.99
94424662--94425260	300	2.0	299	95	0	1063	39	20	19	20	1.92
94431200--94431280	33	2.5	33	89	0	126	29	23	18	28	1.98
94431921--94431958	19	2.0	19	85	10	51	18	44	23	13	1.85
94441945--94442092	41	3.6	40	76	15	142	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94449993--94450093	40	2.5	41	85	4	125	25	20	28	24	1.99
94449976--94450131	41	3.9	41	75	14	119	23	22	26	26	2.00
94452298--94452341	18	2.4	18	96	0	79	25	15	27	31	1.96
94452407--94453258	438	1.9	437	84	3	1124	25	21	21	32	1.98
94457331--94457698	144	2.5	144	84	2	468	26	26	19	28	1.98
94457331--94457747	144	2.9	144	82	2	426	25	27	19	28	1.99
94457342--94457747	48	8.4	48	77	2	330	25	26	19	28	1.99
94461199--94461283	28	3.0	28	79	3	98	29	28	12	29	1.94
94462597--94462628	16	2.0	16	93	0	55	9	6	34	50	1.60
94467618--94467745	47	2.8	45	82	11	152	25	29	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349