genome.fa.s1.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  145  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46280084--46280261	27	6.6	26	82	6	178	26	15	27	29	1.96
46280085--46280240	82	1.9	81	87	6	226	26	16	27	29	1.96
46280081--46280261	82	2.2	81	82	4	222	27	16	27	29	1.96
46280166--46280272	27	3.9	27	77	10	74	27	14	27	30	1.95
46287417--46287441	13	1.9	13	100	0	50	32	20	16	32	1.94
46287990--46288167	27	6.6	26	83	6	187	26	15	28	29	1.96
46287991--46288146	82	1.9	81	88	3	233	26	16	28	29	1.96
46287987--46288167	82	2.2	81	83	2	229	26	16	27	29	1.96
46288072--46288178	27	3.9	27	85	1	70	26	14	28	30	1.95
46292011--46292048	19	2.0	20	85	15	53	36	0	23	39	1.55
46300682--46300832	43	3.5	40	77	12	108	25	19	26	29	1.98
46300683--46300832	42	3.5	43	74	14	130	25	19	26	28	1.99
46302749--46302861	44	2.6	43	83	6	140	24	19	24	30	1.98
46302751--46302915	43	3.8	42	76	6	134	27	18	24	29	1.98
46306312--46306362	16	3.2	16	97	0	93	52	13	11	21	1.72
46310120--46310152	16	2.1	16	94	5	59	15	0	15	69	1.19
46311853--46312032	89	2.0	89	93	0	306	31	18	21	27	1.97
46312724--46312788	19	3.2	21	71	18	57	47	13	7	30	1.71
46315991--46316078	6	14.3	6	71	17	65	48	14	17	19	1.81
46316000--46316110	31	3.5	31	87	1	132	50	12	16	20	1.77
46316215--46316310	27	3.6	26	83	5	111	36	20	22	19	1.95
46316470--46316533	22	2.9	22	81	9	85	35	23	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46316967--46317141	27	6.3	27	83	9	217	23	22	21	33	1.98
46317123--46317303	54	3.4	54	90	0	292	30	8	20	39	1.84
46317126--46317303	27	6.6	27	85	1	241	30	8	20	39	1.82
46318750--46318868	46	2.6	44	84	8	159	26	19	29	24	1.98
46323345--46323401	30	1.9	30	88	0	87	31	22	7	38	1.81
46325978--46326088	43	2.6	43	79	1	125	32	24	18	24	1.97
46340458--46340513	27	2.1	27	93	0	94	37	23	10	28	1.88
46340465--46340646	27	6.7	27	80	1	143	39	22	7	30	1.82
46340638--46340878	27	8.9	27	81	3	270	35	17	20	26	1.95
46340639--46340881	81	3.0	81	84	5	305	35	18	20	26	1.95
46343423--46343670	47	5.3	47	90	3	351	31	10	31	27	1.89
46343521--46343642	22	5.3	22	62	21	61	32	12	29	25	1.92
46346340--46346606	47	5.6	47	91	3	403	32	8	29	28	1.87
46346359--46346606	92	2.7	93	92	1	399	32	9	30	28	1.88
46346725--46346803	37	2.1	37	88	4	115	25	18	30	25	1.98
46350082--46350158	31	2.5	31	86	0	100	20	16	12	49	1.79
46350082--46350169	6	14.3	6	72	13	72	20	15	13	50	1.78
46351107--46351140	18	1.9	17	88	5	50	20	17	17	44	1.87
46358993--46359170	27	6.6	27	80	5	162	28	28	16	26	1.97
46367056--46367233	27	6.6	27	81	5	171	28	28	16	26	1.97
46367077--46367232	82	1.9	81	86	3	224	28	28	16	26	1.97
46371354--46371408	28	2.0	28	100	0	110	54	5	10	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46371942--46371986	24	1.9	23	90	4	72	62	2	2	33	1.20
46371968--46372038	18	3.8	18	75	18	65	67	1	1	29	1.07
46371990--46372046	21	2.8	21	86	7	82	64	1	1	31	1.13
46373228--46373265	17	2.2	18	85	4	51	36	0	0	63	0.95
46373451--46373476	12	2.2	12	100	0	52	0	7	0	92	0.39
46374021--46374055	7	4.9	7	89	6	52	17	0	37	45	1.48
46374028--46374062	15	2.3	15	95	0	61	17	0	34	48	1.47
46377820--46377969	74	2.0	74	94	0	264	40	16	11	32	1.84
46379822--46379886	29	2.3	29	83	2	78	41	3	24	30	1.70
46380370--46380535	42	3.8	42	74	15	133	28	13	25	32	1.93
46381542--46381677	42	3.2	42	91	0	200	16	25	36	20	1.94
46400252--46400349	39	2.5	39	88	3	135	26	19	27	26	1.99
46402891--46402948	30	1.9	30	82	6	73	22	34	25	17	1.96
46405279--46405342	28	2.3	28	97	0	119	18	17	35	28	1.93
46405668--46405997	53	6.2	53	85	4	396	38	21	10	29	1.86
46405659--46405985	80	4.1	81	86	2	394	39	20	10	29	1.85
46405668--46405997	27	12.3	27	81	6	359	38	21	10	29	1.86
46410631--46410684	26	2.1	26	96	0	99	35	14	16	33	1.90
46412324--46412369	22	2.1	22	88	11	69	73	6	4	15	1.19
46427219--46427402	40	4.6	39	80	9	194	25	22	27	25	2.00
46427271--46427435	79	2.1	79	82	6	192	26	20	27	25	1.99
46435762--46435836	11	6.9	11	78	3	62	40	17	1	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46435969--46436079	47	2.3	47	85	10	154	36	9	4	49	1.55
46435969--46436099	48	2.7	46	80	14	149	33	9	5	51	1.56
46437077--46437109	7	4.7	7	100	0	66	27	0	15	57	1.38
46437105--46437129	7	3.6	7	100	0	50	28	0	16	56	1.41
46437084--46437129	14	3.3	14	85	14	60	28	0	15	56	1.39
46441276--46441630	126	2.8	126	91	0	557	27	17	18	37	1.93
46442174--46442244	19	3.8	19	80	14	94	43	21	0	35	1.53
46442355--46442416	32	1.9	33	90	3	99	51	17	0	30	1.46
46444880--46444923	20	2.1	21	83	4	54	61	4	2	31	1.28
46445092--46445135	17	2.6	17	92	3	72	65	4	0	29	1.12
46447226--46447273	24	2.0	24	91	0	78	35	2	10	52	1.48
46449883--46450003	61	2.0	61	93	0	206	32	20	14	33	1.92
46462595--46462779	40	4.7	40	83	6	225	25	27	22	24	2.00
46462597--46462779	79	2.3	81	83	7	223	25	27	22	24	2.00
46463905--46464136	56	4.1	56	98	0	437	22	22	9	45	1.80
46467708--46467997	55	5.5	53	73	13	217	24	23	16	35	1.95
46467697--46468011	54	6.0	54	76	11	276	24	23	15	35	1.94
46467883--46468083	47	4.1	47	78	13	226	26	23	14	35	1.93
46467828--46468058	101	2.3	101	96	0	417	25	23	13	36	1.92
46468144--46468228	44	1.9	44	92	0	143	21	23	20	35	1.96
46468511--46468566	29	1.9	29	100	0	112	28	25	10	35	1.89
46468512--46468573	29	2.1	29	93	0	106	32	24	8	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46469376--46469400	12	2.1	12	100	0	50	8	28	24	40	1.83
46476360--46476447	41	2.1	41	82	0	104	22	18	31	27	1.97
46477341--46477383	15	2.9	15	86	6	52	27	0	13	58	1.37
46482807--46482883	38	2.0	38	100	0	154	31	12	15	40	1.85
46487372--46487626	55	4.8	53	79	8	252	36	17	24	21	1.94
46487382--46487579	108	1.8	110	89	4	312	34	17	25	22	1.95
46487808--46487838	16	1.9	16	93	0	53	41	0	22	35	1.54
46492397--46492448	26	2.0	26	100	0	104	34	19	19	26	1.95
46498646--46498683	18	2.1	18	85	9	51	28	10	39	21	1.86
46509285--46509314	11	2.9	10	90	9	51	20	3	16	60	1.50
46509285--46509333	17	2.6	18	84	12	55	18	6	18	57	1.61
46510027--46510193	43	3.9	42	76	9	160	28	13	23	33	1.93
46513346--46513495	42	3.5	42	86	3	194	29	16	25	29	1.96
46515092--46515213	46	2.6	47	86	5	156	27	22	13	36	1.92
46522698--46522816	43	2.8	42	76	12	129	23	19	28	28	1.98
46533218--46533363	48	3.0	48	86	0	211	27	18	26	27	1.98
46533223--46533380	48	3.3	47	83	3	181	29	18	25	26	1.98
46549402--46549478	24	3.2	24	88	0	109	38	5	36	19	1.74
46551097--46551177	33	2.4	34	75	8	85	28	16	25	29	1.96
46558983--46559061	25	3.3	25	61	10	65	32	5	29	32	1.79
46558967--46559344	47	8.1	47	94	0	643	32	9	30	28	1.88
46559463--46559540	36	2.1	37	86	6	106	25	19	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46561390--46561492	43	2.4	43	98	0	197	23	15	34	26	1.94
46561474--46561547	29	2.6	29	86	4	96	27	16	31	25	1.96
46561858--46562053	40	4.9	40	81	5	184	26	22	27	24	2.00
46561858--46562054	80	2.5	81	82	5	222	25	22	26	24	2.00
46570188--46570340	40	3.8	40	83	8	188	24	20	28	26	1.99
46570188--46570340	79	1.9	80	84	6	204	24	20	28	26	1.99
46571705--46571929	40	5.7	40	86	5	278	25	28	22	24	2.00
46571707--46571929	119	1.9	120	84	6	301	25	27	22	24	2.00
46573055--46573174	56	2.1	56	98	0	231	22	23	9	45	1.81
46579640--46579669	11	2.7	11	94	0	51	6	13	0	80	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349