Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  14  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4182051--4182137
16
5.4
16
70
20
58
41
0
1
57
1.06
4188742--4188783
17
2.6
17
82
14
54
42
0
0
57
0.99
4188759--4188910
44
3.4
43
68
20
112
46
2
3
48
1.32
4188744--4188876
47
3.0
46
67
22
111
45
1
2
51
1.23
4188917--4189442
120
4.4
120
91
3
807
41
2
5
49
1.40
4189153--4189187
18
2.0
17
88
5
52
45
0
0
54
0.99
4189286--4189332
16
3.0
16
78
12
53
46
0
2
51
1.13
4189282--4189332
15
3.5
15
82
12
54
47
0
1
50
1.12
4189572--4189681
45
2.6
44
81
11
133
31
28
5
34
1.80
4189660--4189713
16
3.4
16
94
0
90
31
35
0
33
1.58
4206824--4206900
12
7.0
11
72
21
54
37
6
1
54
1.35
4206860--4207013
3
54.3
3
65
19
55
30
4
1
62
1.26
4206957--4206982
13
2.0
13
100
0
52
38
0
0
61
0.96
4206944--4206984
21
1.9
22
95
5
75
34
0
0
65
0.93
4206939--4206984
8
6.0
8
78
17
53
36
0
0
63
0.95
4207019--4207062
13
3.5
12
87
6
52
25
2
4
68
1.20
4207452--4207679
127
1.8
127
81
5
293
26
18
19
35
1.95
4212012--4212048
11
3.6
11
86
13
53
56
5
0
37
1.22
4227080--4227289
31
6.8
31
90
1
323
27
19
26
26
1.99
4227306--4227430
47
2.7
47
86
1
162
28
16
25
29
1.96
4227401--4227515
42
2.7
43
82
9
146
30
14
26
28
1.95
4229407--4229474
30
2.3
30
84
5
84
48
5
17
27
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4231894--4232031
46
3.0
46
90
2
197
39
14
23
22
1.91
4233304--4233344
20
2.0
20
100
0
82
34
19
9
36
1.85
4233375--4233400
9
2.9
9
100
0
52
11
34
23
30
1.90
4242943--4242979
18
2.1
18
100
0
74
5
27
10
56
1.55
4242970--4243027
26
2.3
24
80
11
62
3
20
0
75
0.94
4242973--4243009
14
2.7
14
91
4
58
0
24
0
75
0.80
4243611--4243734
59
2.1
58
78
12
128
25
12
7
54
1.63
4244515--4244553
5
7.8
5
100
0
78
61
0
0
38
0.96
4247570--4247608
19
2.0
20
95
5
71
17
0
10
71
1.12
4247570--4247634
19
2.9
23
84
13
66
23
0
10
66
1.23
4248435--4248501
20
3.3
20
72
12
73
32
2
8
55
1.46
4248397--4248501
41
2.6
41
91
4
162
35
1
10
52
1.47
4248413--4248481
21
3.3
21
68
11
61
37
1
10
50
1.45
4250742--4250789
20
2.5
20
86
3
62
27
4
4
64
1.30
4253864--4254221
46
8.0
46
90
5
536
38
15
24
22
1.92
4253920--4254181
84
3.0
85
88
8
409
37
15
24
22
1.93
4253874--4254221
130
2.6
131
90
5
529
38
15
24
22
1.92
4253864--4254180
176
1.8
176
95
0
580
37
15
24
23
1.93
4254482--4254528
25
2.0
25
83
8
62
53
4
14
27
1.60
4258170--4258238
10
7.1
9
77
19
68
15
2
0
81
0.81
4258170--4258237
26
2.6
26
84
13
86
16
2
0
80
0.82
4258170--4258238
19
3.5
19
79
16
79
15
2
0
81
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4258164--4258239
27
2.8
27
76
23
79
15
5
0
78
0.91
4258345--4258476
41
3.2
41
87
7
169
31
36
12
20
1.89
4259230--4259442
118
1.8
118
94
0
381
22
16
31
29
1.95
4259590--4259635
6
7.8
6
86
13
53
86
0
13
0
0.56
4259587--4259637
9
5.8
9
86
4
77
88
0
11
0
0.52
4259587--4259637
17
2.9
18
88
2
77
88
0
11
0
0.52
4259598--4259636
15
2.5
15
95
4
69
87
0
12
0
0.55
4262950--4262998
19
2.4
21
80
10
57
51
4
2
42
1.32
4262965--4263004
21
1.9
21
85
10
55
52
2
0
45
1.14
4263249--4263304
28
2.0
28
82
10
69
44
16
5
33
1.70
4267753--4267793
21
2.0
21
90
0
64
26
7
0
65
1.18
4267865--4268012
3
48.7
3
73
14
108
29
5
2
62
1.28
4268060--4268091
3
10.7
3
100
0
64
34
0
0
65
0.93
4268608--4268656
25
2.0
25
84
8
64
22
14
4
59
1.52
4269676--4269725
24
2.0
26
85
14
70
66
0
8
26
1.19
4269708--4269755
21
2.2
21
85
3
60
56
2
16
25
1.51
4269776--4269809
4
8.8
4
87
6
52
73
0
2
23
0.97
4269781--4269811
15
2.1
15
100
0
62
74
0
0
25
0.82
4269953--4269990
13
2.9
14
80
11
53
73
0
2
23
0.95
4271376--4271413
19
2.0
19
94
0
67
39
15
18
26
1.91
4272006--4272030
2
12.5
2
100
0
50
48
0
0
52
1.00
4273387--4273419
17
1.9
17
93
0
57
48
0
6
45
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4276807--4276850
15
2.9
15
80
12
54
63
0
9
27
1.24
4277120--4277148
3
9.7
3
100
0
58
65
0
0
34
0.93
4277376--4277414
19
2.1
19
85
9
53
61
0
7
30
1.24
4280945--4280977
17
1.9
17
88
11
50
21
6
0
72
1.05
4287642--4287799
44
3.6
43
73
5
156
18
24
23
33
1.97
4287685--4288029
43
8.0
43
67
10
191
20
22
22
33
1.97
4287617--4288017
87
4.6
87
90
0
500
21
22
22
33
1.97
4292720--4292848
46
2.8
45
83
5
143
20
21
26
31
1.98
4295705--4295744
20
2.0
20
85
9
55
35
7
5
52
1.51
4297959--4297992
15
2.2
16
89
5
52
70
0
5
23
1.09
4299296--4299415
56
2.1
58
81
10
140
25
13
5
55
1.61
4299585--4299617
14
2.4
14
95
5
59
69
18
0
12
1.18
4309082--4309110
10
2.9
10
100
0
58
62
0
0
37
0.96
4310197--4310239
2
22.0
2
83
4
52
46
6
0
46
1.30
4313433--4313472
20
2.0
20
85
9
55
2
17
25
55
1.55
4314334--4314628
44
6.9
44
69
13
195
25
22
20
31
1.98
4314251--4314628
87
4.5
84
78
8
353
25
22
20
31
1.98
4314803--4315143
86
4.0
87
81
8
353
24
21
22
30
1.99
4314932--4315143
85
2.4
87
88
3
322
25
22
22
29
1.99
4316387--4316420
1
34.0
1
93
0
59
0
2
0
97
0.19
4316385--4316420
14
2.6
14
95
4
65
0
5
0
94
0.31
4328770--4328809
20
2.0
20
85
9
55
2
17
25
55
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4334263--4334304
17
2.5
16
82
17
50
38
2
2
57
1.25
4347760--4347831
35
2.1
35
100
0
144
31
13
19
34
1.91
4358159--4358193
15
2.3
15
90
0
52
42
2
0
54
1.15
4359647--4359849
24
7.9
25
76
13
123
59
6
6
26
1.49
4359640--4359906
27
10.2
26
72
12
138
60
5
6
28
1.43
4359671--4359856
102
1.8
101
84
7
252
60
6
6
26
1.46
4359936--4360026
25
3.6
25
75
18
89
63
4
4
27
1.32
4359956--4360030
24
3.1
24
76
14
66
68
4
2
25
1.21
4359933--4360046
50
2.2
53
85
7
153
62
5
5
27
1.38
4361526--4361864
132
2.6
132
84
1
412
25
21
21
30
1.98
4361526--4361862
44
7.7
44
80
3
320
26
21
21
31
1.98
4362365--4362401
17
2.2
17
90
4
58
13
8
43
35
1.74
4362392--4362427
12
3.0
12
84
15
56
16
0
27
55
1.42
4366112--4366461
46
8.0
46
84
10
446
22
24
15
37
1.93
4366156--4366461
84
3.5
84
92
3
477
23
24
15
36
1.94
4366291--4366450
38
4.0
38
86
12
239
23
25
17
33
1.96
4370737--4370764
5
5.6
5
100
0
56
42
0
0
57
0.99
4371111--4371149
18
2.1
19
85
4
53
33
0
0
66
0.92
4382471--4382513
19
2.3
19
84
4
52
34
20
4
39
1.74
4383730--4383791
26
2.4
25
75
21
65
33
1
6
58
1.34
4385920--4386189
39
7.0
39
93
0
454
22
28
26
21
1.99
4388126--4388163
5
7.4
5
83
16
51
0
18
0
81
0.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4388114--4388164
6
8.7
6
77
18
54
1
17
0
80
0.81
4388114--4388163
11
4.4
11
83
16
66
2
18
0
80
0.82
4389253--4389299
19
2.4
21
79
10
55
40
10
2
46
1.50
4392131--4392204
36
2.0
38
87
12
109
43
14
10
31
1.80
4394711--4394741
15
2.1
15
100
0
62
41
6
12
38
1.69
4395371--4395732
48
7.6
47
76
8
293
27
28
18
25
1.98
4395369--4395751
96
4.0
95
84
4
432
28
28
17
25
1.98
4395369--4395732
144
2.5
144
77
7
371
27
28
18
25
1.98
4399843--4399873
16
1.9
16
93
0
53
48
0
0
51
1.00
4402293--4402360
34
2.0
34
97
0
127
27
23
16
32
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349