Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  326  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108464836--108464874
19
2.1
19
85
0
51
48
7
2
41
1.45
108465123--108465156
9
3.7
9
92
4
50
50
14
8
26
1.72
108466151--108466177
12
2.2
12
100
0
54
40
0
22
37
1.54
108472572--108472721
82
1.9
80
83
5
194
30
28
20
21
1.98
108476224--108476295
6
12.2
6
74
11
60
16
2
4
76
1.06
108476795--108476836
20
2.1
20
100
0
84
30
9
19
40
1.83
108479334--108479399
21
2.9
23
76
17
66
19
6
0
74
1.03
108479501--108479565
24
2.7
24
81
9
62
12
6
4
76
1.12
108484145--108484183
5
7.8
5
100
0
78
82
0
0
17
0.68
108490946--108491002
26
2.2
26
100
0
114
26
19
7
47
1.74
108492341--108492396
23
2.3
24
84
9
78
16
16
41
26
1.88
108492583--108492625
20
2.1
20
86
4
59
13
2
32
51
1.54
108497888--108497917
12
2.5
12
94
0
51
13
23
20
43
1.86
108498431--108498637
91
2.3
91
85
5
267
44
4
3
46
1.43
108498667--108498698
16
1.9
17
93
6
57
53
0
0
46
1.00
108498691--108498903
61
3.4
63
69
17
194
41
2
6
49
1.41
108498653--108498945
120
2.4
120
92
2
482
42
2
5
50
1.36
108498774--108498808
18
2.0
17
88
5
52
40
0
0
60
0.97
108498894--108498928
18
2.0
17
88
5
52
45
0
0
54
0.99
108499041--108499075
16
2.2
16
90
10
54
45
0
0
54
0.99
108498882--108499155
146
1.9
149
95
2
500
47
2
3
46
1.34
108499311--108499346
16
2.2
16
100
0
72
38
36
0
25
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108500485--108500552
16
4.2
16
90
0
109
26
2
33
36
1.72
108500788--108500822
18
2.0
17
88
5
52
54
0
0
45
0.99
108500682--108500990
157
2.0
156
96
0
573
44
2
4
47
1.39
108500925--108500966
15
2.7
16
82
14
52
52
2
0
45
1.13
108500934--108500972
15
2.7
15
88
7
55
53
0
0
46
1.00
108501043--108501094
15
3.6
15
80
12
56
53
1
0
44
1.11
108500928--108501441
120
4.3
120
96
1
919
49
5
2
42
1.39
108501163--108501334
15
11.6
15
65
21
60
50
4
1
43
1.33
108503643--108503814
15
11.6
15
67
18
60
43
1
4
50
1.33
108503536--108504049
120
4.3
120
96
1
919
42
2
5
49
1.39
108503883--108503934
15
3.6
15
80
12
56
44
0
1
53
1.11
108504011--108504052
15
2.7
16
82
14
52
45
0
2
52
1.13
108504005--108504043
15
2.7
15
88
7
55
46
0
0
53
1.00
108504155--108504189
18
2.0
17
88
5
52
45
0
0
54
0.99
108503987--108504295
157
2.0
156
96
0
573
47
4
2
44
1.39
108504425--108504492
16
4.2
16
90
0
109
36
33
2
26
1.72
108505631--108505666
16
2.2
16
100
0
72
25
0
36
38
1.56
108505903--108505937
18
2.0
17
94
5
61
51
0
0
48
1.00
108506050--108506084
18
2.0
17
88
5
52
54
0
0
45
0.99
108505822--108506096
147
1.9
149
95
1
500
46
3
2
47
1.33
108506070--108506248
55
3.1
54
64
22
128
49
7
2
41
1.43
108506170--108506204
18
2.0
17
88
5
52
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108506280--108506311
16
1.9
17
93
6
57
46
0
0
53
1.00
108506033--108506325
120
2.4
120
92
2
482
50
5
2
42
1.36
108506341--108506548
91
2.3
91
85
5
251
46
3
4
45
1.42
108507062--108507091
12
2.5
12
94
0
51
43
20
23
13
1.86
108511670--108511739
26
2.8
25
78
4
70
37
1
12
48
1.50
108513228--108513268
14
2.9
14
96
0
73
21
39
0
39
1.54
108533561--108533585
3
8.3
3
100
0
50
0
36
0
64
0.94
108540117--108540141
3
8.3
3
100
0
50
32
0
0
68
0.90
108540555--108540596
14
3.0
14
85
0
57
26
9
4
59
1.48
108552446--108552484
14
2.8
14
81
14
53
84
0
12
2
0.72
108552445--108552483
20
2.0
20
90
10
62
84
0
10
5
0.76
108554730--108554905
46
3.8
46
81
4
219
20
21
30
28
1.98
108554726--108554897
93
1.8
93
93
0
299
20
21
30
27
1.98
108556235--108556537
87
3.5
85
81
10
348
28
16
18
36
1.92
108563587--108563632
22
2.1
22
84
11
60
23
6
6
63
1.43
108574368--108574416
16
3.0
17
77
17
50
34
0
4
61
1.15
108574716--108574748
17
1.9
17
93
0
57
33
0
9
57
1.30
108576868--108577104
127
1.9
127
86
1
341
37
24
12
24
1.90
108579292--108579688
176
2.3
176
88
1
600
29
21
18
29
1.97
108593583--108593626
19
2.3
18
81
11
52
34
4
6
54
1.47
108602754--108602785
12
2.7
12
100
0
64
9
37
21
31
1.85
108605982--108606042
28
2.2
29
83
13
85
47
4
6
40
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108606341--108606380
21
1.9
21
85
10
55
47
10
7
35
1.65
108606439--108606539
3
33.7
3
71
16
59
62
5
1
29
1.30
108608606--108608749
71
2.0
70
87
1
207
29
16
20
33
1.95
108608735--108608768
14
2.4
14
90
0
50
20
17
2
58
1.51
108608676--108608841
87
1.9
87
92
0
278
30
18
18
33
1.94
108608747--108608930
73
2.5
73
80
4
208
30
17
17
33
1.94
108608747--108608947
75
2.7
73
79
3
233
29
16
20
33
1.94
108608896--108609056
55
2.9
55
88
0
234
29
13
16
40
1.86
108610510--108610540
16
1.9
16
93
0
53
0
58
0
41
0.98
108611621--108611657
20
1.9
18
89
10
56
29
0
5
64
1.15
108612860--108612915
12
4.4
13
77
11
62
60
8
0
30
1.27
108612860--108612895
14
2.7
14
91
8
58
66
5
0
27
1.13
108613085--108613112
13
2.2
13
100
0
56
46
0
21
32
1.52
108616173--108616233
27
2.3
27
82
0
77
44
24
4
26
1.74
108621231--108621262
6
5.3
6
100
0
64
0
65
0
34
0.93
108621489--108621515
9
3.0
9
100
0
54
0
0
11
88
0.50
108629608--108629846
126
1.9
127
96
0
444
37
16
16
29
1.90
108630989--108631373
85
4.5
86
90
2
584
20
26
23
29
1.99
108631102--108631233
41
3.1
41
62
21
101
18
27
25
28
1.98
108631399--108631543
44
3.3
43
72
12
143
26
15
20
37
1.92
108630985--108631635
85
7.6
87
82
7
351
22
22
22
32
1.98
108631443--108631587
44
3.3
42
70
15
116
24
17
20
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108631679--108631765
44
2.0
44
82
8
106
19
22
22
34
1.97
108631674--108632128
179
2.6
178
88
3
691
23
21
22
32
1.98
108633405--108633465
18
3.6
16
73
16
52
0
18
1
80
0.80
108633383--108633442
24
2.6
23
84
5
68
0
20
3
76
0.92
108633393--108633464
37
1.9
38
83
8
94
0
19
1
79
0.81
108633419--108633459
17
2.6
16
81
11
57
0
21
0
78
0.76
108637657--108637900
126
1.9
126
97
0
461
38
15
16
29
1.90
108638361--108638397
19
2.0
18
94
5
65
64
0
2
32
1.07
108638388--108638505
62
1.9
63
84
8
163
61
5
5
27
1.40
108638784--108638819
18
2.0
18
88
0
54
16
2
58
22
1.51
108638798--108638872
39
1.9
39
94
0
132
17
1
54
26
1.51
108638841--108638903
29
2.2
29
88
5
92
19
1
47
31
1.59
108648483--108648519
16
2.4
16
90
4
58
62
0
0
37
0.96
108649864--108649920
26
2.1
27
90
3
89
47
8
19
24
1.77
108657688--108657883
98
2.0
98
95
0
356
44
6
21
26
1.77
108672677--108672711
18
1.9
18
94
0
61
48
0
14
37
1.44
108676118--108676165
11
4.2
11
79
10
51
62
2
0
35
1.07
108678493--108678517
12
2.1
12
100
0
50
52
0
16
32
1.44
108678948--108678990
21
2.0
21
100
0
86
44
0
18
37
1.50
108678952--108678997
21
2.2
21
92
0
74
43
2
19
34
1.63
108685055--108685095
21
2.0
21
85
9
57
41
2
2
53
1.27
108685878--108686072
94
2.1
94
83
5
243
44
3
7
44
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108686201--108686268
33
2.0
34
82
2
84
45
0
1
52
1.09
108686617--108686644
2
14.0
2
100
0
56
50
0
50
0
1.00
108703612--108703653
17
2.7
15
80
20
50
69
4
2
23
1.20
108703809--108703847
12
3.2
12
85
0
60
76
0
7
15
0.99
108703809--108703852
18
2.4
18
92
3
70
75
0
6
18
1.02
108703809--108703852
6
7.2
6
86
2
52
75
0
6
18
1.02
108703951--108703989
20
2.0
20
85
10
53
64
2
2
30
1.21
108704289--108704342
26
2.1
26
100
0
108
68
0
7
24
1.15
108718174--108718235
24
2.6
25
80
14
78
54
1
1
41
1.19
108718757--108718817
22
2.7
22
80
16
72
37
0
1
60
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349