genome.fa.s1.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  133  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42323923--42324068	37	3.9	37	94	0	238	26	30	18	24	1.98
42324209--42324500	48	6.0	48	94	1	512	31	27	6	35	1.81
42328318--42328378	30	2.0	30	83	0	77	31	22	8	37	1.84
42334322--42334498	46	3.9	44	72	11	158	24	20	27	28	1.99
42334320--42334490	93	1.8	93	87	0	252	23	21	27	27	1.99
42359387--42359447	32	1.9	32	100	0	122	39	18	9	32	1.83
42365745--42365862	44	2.7	43	73	8	121	32	26	16	25	1.96
42377925--42378100	46	3.8	45	81	10	212	21	21	29	28	1.98
42377922--42378092	93	1.8	93	94	0	306	21	21	29	27	1.98
42381024--42381087	15	4.4	15	84	11	89	10	15	12	60	1.58
42383473--42383648	46	3.8	45	81	10	212	21	21	29	28	1.98
42383470--42383640	93	1.8	93	94	0	306	21	21	29	27	1.98
42387611--42387663	25	2.2	24	77	16	56	35	18	16	28	1.93
42388735--42388780	20	2.3	20	85	7	58	17	19	2	60	1.46
42392293--42392320	13	2.2	13	100	0	56	14	32	35	17	1.90
42394155--42394270	55	2.1	55	81	0	133	28	27	24	19	1.99
42394774--42394820	23	2.0	23	83	0	58	23	31	8	36	1.85
42399638--42399807	40	4.3	40	89	0	225	27	28	20	24	1.99
42399638--42399784	79	1.9	80	88	1	224	27	27	19	24	1.99
42399636--42399859	40	5.7	38	81	9	182	27	28	20	24	1.99
42399674--42399859	80	2.3	79	81	5	205	27	28	19	24	1.99
42399792--42399868	40	1.9	41	84	7	104	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42401712--42401749	14	2.9	13	81	11	51	18	13	10	57	1.63
42402733--42402784	27	1.9	27	88	7	79	34	25	19	21	1.96
42406354--42406396	22	2.0	22	85	0	59	30	32	27	9	1.88
42406350--42406409	22	2.7	22	81	0	57	33	30	26	10	1.89
42415864--42415990	48	2.7	48	86	1	166	30	15	23	29	1.96
42415967--42416042	38	2.0	38	89	0	116	27	14	28	28	1.95
42419679--42419836	68	2.3	68	94	0	271	25	31	13	29	1.94
42422159--42422522	47	7.8	45	72	10	243	21	28	21	27	1.99
42422159--42422519	94	3.9	93	78	10	355	22	28	21	27	1.99
42427410--42427574	43	3.9	43	76	6	158	27	15	24	32	1.95
42435145--42435315	43	4.0	44	77	5	170	25	15	26	32	1.95
42442046--42442310	40	6.7	40	83	5	252	24	27	21	26	1.99
42442242--42442319	40	1.9	41	82	10	97	26	28	20	24	1.99
42449971--42450233	39	6.7	40	84	6	263	25	28	20	25	1.99
42449971--42450180	79	2.7	79	85	5	266	24	28	20	25	1.99
42450165--42450242	40	1.9	41	82	10	97	26	28	20	24	1.99
42452537--42452687	57	2.6	56	79	9	155	31	22	17	27	1.97
42453228--42453272	20	2.2	20	88	0	63	35	13	2	48	1.54
42463577--42463622	20	2.3	20	96	0	83	4	50	2	43	1.34
42469097--42469130	16	2.1	17	88	5	52	38	5	20	35	1.77
42478793--42479048	40	6.5	40	88	4	335	24	27	23	24	2.00
42478826--42479052	40	5.7	40	89	5	345	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42486931--42487157	40	5.7	40	90	4	343	24	27	22	25	2.00
42486931--42487157	79	2.9	79	90	2	341	24	27	22	25	2.00
42486898--42487157	119	2.2	119	86	4	357	23	26	22	26	2.00
42495783--42495858	23	3.2	25	62	24	63	31	13	31	23	1.93
42495803--42495877	23	3.2	23	62	23	57	29	10	32	28	1.90
42495876--42495950	22	3.3	22	65	17	62	36	13	26	24	1.92
42495705--42495993	47	6.1	47	89	3	371	34	10	28	26	1.90
42495967--42496102	46	3.0	46	86	2	184	36	8	30	25	1.85
42502677--42502755	37	2.1	37	88	4	115	25	30	18	25	1.98
42502874--42503149	47	5.6	47	86	8	347	28	30	9	32	1.88
42502925--42503009	25	3.2	25	67	28	68	31	29	5	32	1.81
42506565--42506760	40	4.9	40	83	2	189	25	27	22	24	2.00
42506578--42506760	80	2.3	81	81	5	212	25	26	23	24	2.00
42507066--42507144	29	2.7	29	86	5	106	27	32	15	24	1.95
42507126--42507228	43	2.4	43	100	0	206	26	35	15	22	1.94
42509094--42509172	37	2.1	37	88	4	115	25	30	18	25	1.98
42509291--42509566	47	5.6	47	86	7	345	28	30	9	32	1.88
42509342--42509426	25	3.2	25	67	28	68	31	29	5	32	1.81
42514422--42514490	34	2.0	34	100	0	138	39	11	17	31	1.85
42516873--42516898	11	2.4	11	100	0	52	15	23	30	30	1.95
42520902--42521042	20	7.1	20	69	13	67	35	18	9	36	1.83
42520905--42521003	40	2.5	40	93	0	162	34	20	10	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42521176--42521292	23	5.0	23	70	16	71	31	17	25	25	1.97
42532995--42533068	29	2.6	29	89	4	105	25	16	32	25	1.96
42542920--42543012	27	3.4	27	72	0	87	38	18	21	21	1.93
42542999--42543061	22	2.9	22	82	0	81	38	22	20	19	1.94
42543415--42543746	27	12.3	27	79	9	173	29	10	20	39	1.86
42543428--42543755	54	6.1	54	84	9	386	29	10	21	38	1.86
42543429--42543751	81	4.0	81	83	7	399	29	10	21	39	1.86
42543455--42543755	27	11.1	27	82	9	332	29	9	21	38	1.86
42545432--42545603	46	3.7	46	77	13	190	29	28	19	22	1.98
42545440--42545610	93	1.8	93	91	0	279	28	28	21	22	1.99
42547151--42547269	59	2.0	59	98	0	229	39	26	12	21	1.89
42547771--42547795	6	4.2	6	100	0	50	84	0	16	0	0.63
42551719--42551894	92	1.9	92	83	4	228	26	28	16	27	1.97
42553935--42554105	86	2.0	86	82	4	211	39	20	7	33	1.80
42554126--42554172	19	2.4	19	89	3	67	48	2	2	46	1.25
42554163--42554198	17	2.1	18	89	5	56	52	0	0	47	1.00
42554229--42554267	10	3.9	10	83	10	53	61	0	0	38	0.96
42554467--42554552	9	9.2	10	74	14	60	32	2	1	63	1.14
42554458--42554552	19	5.1	18	75	16	77	34	2	1	62	1.14
42554458--42554526	27	2.5	27	79	9	86	33	1	1	63	1.12
42554528--42554580	26	2.0	28	85	7	74	41	0	1	56	1.10
42554510--42554610	46	2.2	46	81	8	109	37	1	1	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42554637--42554924	90	3.1	95	81	11	335	31	10	21	37	1.86
42554751--42554958	90	2.3	88	88	3	301	31	9	21	37	1.86
42565811--42565957	76	1.9	77	91	4	242	30	14	14	40	1.86
42567760--42567821	31	2.0	31	87	3	90	41	3	1	53	1.27
42567402--42567832	139	3.0	143	80	10	504	44	3	9	42	1.54
42568997--42569102	53	2.0	53	98	0	203	33	8	16	40	1.79
42569015--42569101	27	3.3	27	64	15	72	34	9	13	42	1.77
42569904--42569942	14	2.8	14	96	0	69	38	0	28	33	1.57
42571443--42571580	40	3.5	40	94	3	226	23	23	28	23	1.99
42574299--42574448	67	2.2	67	81	8	171	32	17	28	21	1.96
42574323--42574506	67	2.8	64	77	8	194	29	17	29	22	1.97
42580621--42580787	39	4.3	39	91	0	244	21	25	19	32	1.97
42590659--42590789	39	3.3	41	92	4	191	26	29	20	23	1.99
42590659--42590842	40	4.7	40	85	7	225	26	28	21	23	1.99
42590659--42590842	79	2.3	81	84	5	234	26	28	21	23	1.99
42591970--42592089	56	2.1	56	98	0	231	22	23	9	45	1.81
42599702--42599821	56	2.1	56	98	0	231	22	23	9	45	1.81
42602327--42602396	30	2.3	30	87	0	104	21	25	32	20	1.97
42603479--42603525	10	4.6	10	85	12	51	34	0	4	61	1.15
42605906--42605958	29	1.9	28	85	11	74	39	3	24	32	1.73
42606510--42606664	43	3.6	42	80	6	134	22	18	27	30	1.97
42606508--42606658	42	3.5	43	74	11	132	23	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42607928--42608045	55	2.1	54	80	7	130	22	22	32	22	1.98
42608076--42608172	42	2.3	42	94	0	176	16	26	34	22	1.95
42613361--42613470	44	2.6	42	82	4	130	21	18	29	30	1.97
42617985--42618015	12	2.6	12	89	0	53	90	0	9	0	0.46
42619169--42619193	11	2.3	11	100	0	50	36	0	20	44	1.52
42620308--42620421	45	2.5	45	92	0	183	14	35	7	42	1.74
42620308--42620457	45	3.3	45	84	3	140	13	35	8	43	1.73
42621273--42621374	37	2.8	37	92	0	168	26	29	18	25	1.98
42621491--42621707	47	4.6	47	92	2	353	29	30	7	32	1.86
42621491--42621707	96	2.3	94	92	1	353	29	30	7	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349