genome.fa.s1.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  136  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43672333--43672513	82	2.2	81	83	2	229	27	15	27	29	1.96
43680379--43680556	27	6.6	27	83	3	205	26	15	28	29	1.96
43680380--43680535	82	1.9	81	88	3	233	26	15	28	29	1.96
43680376--43680556	82	2.2	81	83	2	229	27	15	27	29	1.96
43683103--43683144	6	6.8	6	91	2	66	54	0	28	16	1.42
43685461--43685545	30	3.0	29	83	6	86	49	3	10	36	1.55
43685479--43685545	30	2.2	30	89	0	98	46	2	10	40	1.53
43686441--43686481	16	2.7	16	92	7	68	34	0	12	53	1.38
43689732--43689903	46	3.7	46	71	13	154	33	27	17	21	1.96
43696376--43696598	40	5.6	40	85	3	236	26	27	21	24	1.99
43696530--43696607	40	1.9	41	82	10	97	26	28	21	23	1.99
43704227--43704339	38	2.9	40	86	3	142	28	27	20	23	1.99
43704227--43704352	40	3.2	40	86	4	159	26	28	19	24	1.99
43704383--43704460	40	1.9	41	82	10	97	26	28	21	23	1.99
43708000--43708171	46	3.7	46	75	7	168	31	29	19	20	1.97
43708007--43708177	93	1.8	93	87	0	252	30	28	20	21	1.98
43715278--43715459	39	4.6	39	80	8	183	25	20	28	25	1.99
43719836--43720068	40	5.8	40	88	3	310	27	28	20	24	1.99
43727719--43727924	40	5.2	40	93	2	312	26	29	20	23	1.99
43731159--43731199	20	2.0	20	90	0	64	21	26	34	17	1.95
43734265--43734446	78	2.3	81	83	8	223	24	23	28	24	2.00
43734265--43734448	40	4.7	40	83	8	225	23	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43734317--43734481	79	2.1	78	82	7	201	25	21	27	25	1.99
43742196--43742378	79	2.3	81	84	7	232	24	22	27	25	2.00
43742197--43742380	40	4.6	40	83	9	216	23	22	28	25	2.00
43742249--43742413	79	2.1	79	84	6	210	25	21	27	25	1.99
43745756--43745803	20	2.4	20	85	0	69	22	31	18	27	1.97
43747943--43748102	41	4.0	40	94	4	277	23	20	29	27	1.98
43747943--43748102	81	2.0	81	93	4	279	23	20	29	27	1.98
43757903--43758077	48	3.7	47	75	10	171	22	21	27	28	1.99
43759999--43760042	1	44.0	1	100	0	88	0	0	100	0	0.00
43793340--43793374	17	2.0	18	88	5	54	60	20	8	11	1.57
43819436--43819934	47	10.4	47	90	2	692	31	9	29	29	1.88
43820053--43820131	37	2.1	37	88	0	113	24	17	31	26	1.97
43827767--43827842	38	2.0	38	97	0	143	32	11	23	31	1.91
43829032--43829176	40	3.6	40	85	4	193	25	24	26	23	2.00
43835824--43835897	36	2.0	38	94	5	134	32	12	24	31	1.92
43837084--43837228	40	3.6	40	85	4	193	25	24	26	23	2.00
43841165--43841424	40	6.6	40	85	7	313	25	21	27	25	1.99
43841215--43841424	79	2.7	78	85	5	298	24	20	27	27	1.99
43847514--43847622	37	2.9	37	94	0	182	25	32	19	22	1.97
43847748--43848296	48	11.3	48	93	1	909	32	27	6	34	1.81
43850620--43850716	42	2.3	41	82	8	113	24	18	24	31	1.97
43850620--43850755	43	3.2	41	79	11	123	27	18	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43850634--43850724	42	2.1	43	85	4	121	25	16	24	34	1.95
43851037--43851061	8	3.1	8	100	0	50	28	0	12	60	1.32
43852247--43852331	43	2.0	42	82	11	102	35	16	18	29	1.93
43859133--43859186	17	3.2	17	97	0	99	38	27	14	18	1.90
43871764--43871936	46	3.7	46	77	11	192	21	19	28	30	1.98
43871761--43871931	93	1.8	93	91	2	281	21	19	29	29	1.98
43872161--43872198	19	2.0	20	85	15	53	36	0	23	39	1.55
43875194--43875365	93	1.8	93	91	0	281	27	28	22	20	1.99
43875187--43875362	46	3.8	46	77	10	187	28	28	22	20	1.98
43877737--43877790	29	2.0	26	89	10	81	61	16	12	9	1.56
43877740--43877818	15	5.4	15	77	10	83	59	12	16	11	1.61
43880704--43880875	93	1.8	93	96	0	317	27	29	21	20	1.98
43880697--43880872	46	3.8	46	79	12	216	28	29	21	20	1.98
43883361--43883485	25	4.8	26	77	14	125	26	15	28	30	1.96
43883456--43883503	25	2.0	23	84	8	60	20	14	29	35	1.93
43892848--43893024	27	6.6	27	84	3	205	29	28	14	27	1.95
43892869--43893023	81	1.9	80	88	3	231	29	28	14	27	1.95
43904093--43904270	27	6.6	27	84	3	205	29	28	15	26	1.96
43904114--43904269	82	1.9	81	88	3	233	29	28	15	26	1.96
43912079--43912337	27	9.6	27	83	4	234	30	27	14	27	1.95
43912079--43912336	54	4.8	54	82	3	277	30	27	14	27	1.95
43912100--43912336	81	2.9	81	93	1	395	29	27	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43921247--43921293	24	2.0	24	86	0	67	38	4	6	51	1.47
43925099--43925200	17	6.0	17	69	0	69	46	15	8	29	1.76
43925095--43925199	51	2.1	51	83	0	129	46	14	8	30	1.74
43925832--43925880	18	2.7	18	84	6	64	48	22	4	24	1.67
43927916--43927944	11	2.7	11	94	5	51	58	0	34	6	1.25
43929825--43929881	15	3.8	15	73	13	55	36	3	0	59	1.14
43929829--43929895	32	2.1	31	83	8	82	37	5	0	56	1.24
43935282--43935525	45	5.3	45	78	4	245	31	17	17	34	1.93
43935322--43935522	95	2.2	93	82	6	246	31	18	17	31	1.94
43944040--43944088	15	3.5	15	68	21	52	53	30	2	14	1.52
43944033--43944087	26	2.1	26	100	0	110	54	25	3	16	1.58
43945806--43945835	14	2.1	14	93	0	51	53	0	3	43	1.17
43946424--43946474	26	1.9	27	92	4	86	49	0	9	41	1.36
43950530--43950577	19	2.5	19	93	0	78	52	2	22	22	1.58
43952311--43952346	18	1.9	19	88	5	56	63	13	5	16	1.47
43955154--43955193	20	2.0	20	85	9	55	40	5	0	55	1.22
43959958--43960286	46	6.9	50	81	10	318	22	30	19	27	1.98
43960013--43960284	94	2.9	92	80	8	309	23	30	19	26	1.98
43960013--43960276	140	1.9	141	85	4	372	22	30	19	26	1.98
43962018--43962064	22	2.2	22	96	3	87	34	8	0	57	1.29
43965322--43965380	29	2.0	29	100	0	118	32	6	13	47	1.69
43966858--43967033	39	4.5	39	84	2	212	22	22	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43974911--43975095	39	4.7	39	91	0	289	22	21	25	30	1.98
43978857--43979045	39	4.9	39	91	0	299	23	21	25	29	1.99
43984475--43984645	46	3.7	45	78	12	193	30	30	18	19	1.96
44001564--44001680	29	4.1	29	91	1	182	24	13	28	33	1.93
44005577--44005834	27	9.6	26	80	5	246	41	20	10	27	1.85
44005577--44005834	54	4.8	54	85	0	311	41	20	10	27	1.85
44005598--44005834	81	2.9	81	85	2	316	41	19	11	27	1.86
44008786--44008835	20	2.5	20	80	0	64	22	34	22	22	1.97
44010378--44010427	20	2.5	20	80	0	64	22	34	22	22	1.97
44014659--44014842	40	4.7	40	81	8	207	26	28	21	23	1.99
44014665--44014842	79	2.2	80	81	8	204	25	28	21	24	1.99
44015966--44016085	56	2.1	56	98	0	231	22	23	9	45	1.81
44025188--44025250	31	2.0	31	90	0	99	23	22	15	38	1.93
44025435--44025565	48	2.6	49	82	11	160	27	23	18	30	1.98
44025435--44025563	25	5.2	25	86	8	158	27	24	18	30	1.98
44025614--44025680	20	3.3	20	76	0	80	35	20	10	32	1.87
44027257--44027472	119	1.8	120	83	7	287	25	26	21	25	2.00
44027255--44027479	79	2.8	79	81	5	256	25	27	22	24	2.00
44027236--44027479	40	6.1	39	81	9	253	25	27	22	25	2.00
44032082--44032299	40	5.5	40	85	5	255	25	26	21	26	2.00
44032082--44032302	79	2.8	79	82	6	250	25	27	21	25	2.00
44032084--44032299	119	1.8	120	82	7	278	25	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44033166--44033285	56	2.1	56	98	0	231	22	23	9	45	1.81
44041192--44041311	23	5.0	24	88	9	174	28	22	20	28	1.99
44041213--44041309	48	2.1	46	94	3	167	28	21	20	28	1.98
44041356--44041430	16	4.3	18	69	27	72	34	21	10	33	1.88
44041360--44041437	20	4.4	18	73	21	67	33	21	11	33	1.90
44041373--44041432	31	1.9	30	86	10	84	35	23	10	31	1.88
44043664--44043697	17	1.9	17	88	5	50	41	23	0	35	1.55
44049355--44049388	18	1.9	18	88	5	52	44	11	0	44	1.40
44062904--44063004	50	2.0	50	96	0	184	25	21	34	17	1.96
44064529--44064675	39	3.8	39	91	0	231	22	25	21	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349