Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  150  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47724362--47724441
27
3.0
27
86
0
115
22
21
13
42
1.88
47724365--47724456
27
3.4
27
83
0
112
20
20
13
45
1.84
47724362--47724473
54
2.1
54
81
0
125
21
20
14
43
1.87
47724506--47724575
27
2.6
27
79
2
79
24
28
7
40
1.81
47727842--47727990
7
21.9
7
64
21
50
57
0
4
38
1.23
47727892--47727936
21
2.1
21
84
8
56
60
0
4
35
1.17
47728296--47728393
18
5.5
18
89
4
146
36
13
11
38
1.80
47728296--47728402
35
3.0
35
94
4
178
37
14
10
38
1.80
47737289--47737376
44
2.0
44
86
0
122
32
29
18
19
1.95
47740667--47740848
40
4.6
40
93
2
287
22
27
23
26
1.99
47748671--47748852
40
4.6
40
93
2
278
23
27
22
26
1.99
47756442--47756527
44
2.0
44
86
4
120
31
31
17
19
1.95
47758017--47758258
49
4.9
50
79
3
220
29
25
19
26
1.98
47765046--47765220
49
3.5
49
85
6
244
29
25
18
26
1.98
47765033--47765227
49
3.9
49
83
5
239
29
25
18
26
1.98
47765039--47765221
100
1.8
100
95
0
330
29
25
19
25
1.98
47769584--47769621
14
2.9
13
81
11
51
57
10
13
18
1.63
47769617--47769655
20
2.0
20
84
0
51
53
10
5
30
1.56
47778334--47778398
31
2.1
31
97
0
121
24
20
18
36
1.94
47787333--47787410
29
2.7
28
80
11
95
26
14
29
29
1.95
47787363--47787690
174
1.9
174
96
0
602
30
14
24
30
1.95
47795474--47795545
29
2.5
28
86
11
101
27
15
29
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47795504--47795832
175
1.9
174
94
0
586
30
14
24
30
1.95
47798301--47798346
21
2.1
22
84
11
60
21
15
0
63
1.31
47805024--47805090
30
2.2
30
86
5
91
32
11
1
53
1.47
47806780--47806898
61
1.9
62
83
8
154
33
8
6
51
1.58
47807943--47807982
20
1.9
22
85
10
57
47
2
7
42
1.45
47813435--47813572
43
3.2
43
76
6
127
34
22
15
27
1.94
47822242--47822375
43
3.1
43
80
10
150
33
26
14
25
1.95
47831877--47831925
25
2.0
25
83
0
62
36
6
14
42
1.70
47832148--47832244
40
2.4
40
94
0
167
23
18
24
32
1.97
47832674--47833029
171
2.1
171
95
0
631
18
30
23
27
1.98
47837797--47837984
40
4.7
40
95
0
331
21
27
20
30
1.98
47844459--47844610
40
3.8
40
89
2
207
25
28
21
24
1.99
47852521--47852638
46
2.6
44
84
8
148
22
27
21
28
1.99
47852570--47852740
94
1.8
92
82
5
218
23
28
19
28
1.98
47868505--47868634
27
4.8
27
79
1
127
38
17
16
27
1.91
47868498--47868634
54
2.5
54
77
4
143
38
18
16
26
1.92
47871365--47871486
46
2.7
46
82
10
151
30
19
27
22
1.98
47871363--47871718
49
7.5
49
72
10
199
28
19
28
23
1.99
47871413--47871718
142
2.2
145
81
9
355
27
19
28
23
1.99
47873061--47873142
42
2.0
42
85
0
110
28
14
21
35
1.93
47882138--47882217
42
1.9
42
81
0
97
30
17
20
32
1.95
47902653--47902685
16
2.0
17
88
5
50
45
0
3
51
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47903251--47903320
33
2.2
33
97
2
133
60
8
2
28
1.41
47906263--47906302
21
1.9
21
85
10
55
32
5
5
57
1.42
47906263--47906309
21
2.5
18
78
18
51
34
6
4
55
1.45
47918310--47918397
43
2.0
44
91
2
142
37
22
18
21
1.94
47918539--47918679
43
3.5
43
69
16
138
39
24
17
18
1.91
47918580--47918700
34
3.3
34
67
18
98
35
26
19
18
1.95
47918539--47918716
77
2.3
77
95
0
311
36
24
19
19
1.95
47927254--47927516
40
6.4
40
81
11
320
22
23
28
25
1.99
47927258--47927495
83
2.9
83
95
1
415
22
22
29
25
1.99
47927254--47927516
123
2.1
121
82
11
322
22
23
28
25
1.99
47929948--47930181
48
4.9
48
88
3
330
25
17
29
26
1.98
47936967--47937005
15
2.6
15
100
0
78
15
30
38
15
1.88
47937355--47937400
22
2.2
22
84
7
60
19
41
19
19
1.91
47946936--47947050
43
2.7
43
82
5
126
33
26
13
26
1.93
47950124--47950307
48
3.8
48
85
0
251
27
31
17
23
1.97
47951824--47951883
28
2.2
26
77
11
66
26
26
11
35
1.91
47951838--47951909
28
2.6
28
88
0
99
29
27
12
30
1.93
47954785--47955092
141
2.2
141
90
1
474
36
17
11
34
1.85
47958841--47958888
21
2.3
22
82
10
64
72
6
8
12
1.26
47958967--47959025
31
1.9
30
86
3
82
27
16
5
50
1.66
47966031--47966068
20
1.9
20
89
10
60
65
7
2
23
1.32
47979070--47979293
40
5.6
40
87
3
306
24
23
26
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47979074--47979293
83
2.7
80
88
5
302
23
24
27
25
2.00
47987271--47987494
40
5.6
40
87
3
306
24
23
26
25
2.00
47987275--47987494
83
2.7
80
88
5
302
23
24
27
25
2.00
47989738--47989771
17
2.0
17
94
0
59
52
2
11
32
1.53
47992043--47992260
108
2.0
108
98
0
418
33
11
16
38
1.85
47993260--47993396
58
2.4
58
83
2
177
44
1
2
51
1.25
47993354--47993381
14
2.0
14
100
0
56
42
0
0
57
0.99
47993529--47993595
12
5.6
12
79
10
75
44
0
0
55
0.99
47993542--47993596
10
5.9
10
73
26
50
47
0
0
52
1.00
47993522--47993631
36
3.1
36
89
7
154
47
0
0
51
1.06
47993541--47993631
24
3.8
25
75
15
84
47
0
1
51
1.07
47993530--47993631
12
8.7
11
76
15
66
47
0
0
51
1.07
47993816--47993905
44
2.0
46
84
4
121
35
26
5
32
1.80
47993891--47993929
16
2.4
16
82
0
51
33
25
5
35
1.78
48007125--48007164
21
2.0
21
85
5
55
52
10
2
35
1.48
48007832--48007874
22
2.0
22
100
0
86
37
16
4
41
1.69
48013177--48013243
30
2.3
29
92
5
116
31
29
1
37
1.67
48015273--48015313
21
2.0
21
90
0
64
31
41
19
7
1.79
48021718--48021747
10
2.8
11
90
10
53
36
0
26
36
1.57
48025401--48025476
37
2.1
37
83
14
95
25
7
22
44
1.79
48027382--48027444
15
4.2
15
79
0
72
15
15
15
52
1.75
48031048--48031083
17
2.1
17
100
0
72
25
5
19
50
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48031737--48031812
37
2.1
37
83
14
95
25
7
23
43
1.80
48044019--48044068
27
1.9
26
84
8
66
42
10
14
34
1.78
48048194--48048238
17
2.6
17
92
0
72
35
8
17
37
1.81
48050127--48050486
45
8.1
45
90
2
512
23
20
28
28
1.99
48052102--48052418
46
6.7
46
74
12
225
27
19
29
24
1.98
48057929--48057974
23
2.0
23
100
0
92
30
13
17
39
1.87
48063145--48063351
53
3.8
53
77
3
216
37
18
24
19
1.94
48069307--48069484
27
6.6
27
84
3
205
29
28
15
26
1.96
48069328--48069483
82
1.9
81
88
3
233
29
28
15
26
1.96
48077360--48077537
27
6.6
27
84
3
205
29
28
15
26
1.96
48077381--48077536
82
1.9
81
88
3
233
29
28
15
26
1.96
48082012--48082116
53
2.0
53
80
0
120
40
17
23
19
1.91
48085527--48085593
23
3.2
23
60
27
58
29
0
16
53
1.43
48085522--48085599
39
2.0
39
100
0
156
28
0
17
53
1.44
48086364--48086463
40
2.5
40
85
0
137
30
15
21
34
1.93
48090143--48090275
48
2.8
48
85
0
194
28
29
18
24
1.98
48091832--48091943
43
2.6
42
79
8
136
29
24
16
30
1.96
48094626--48094686
21
2.9
21
85
4
88
32
19
11
36
1.88
48094626--48094686
10
5.9
10
77
11
61
32
19
11
36
1.88
48100092--48100234
46
3.1
46
69
18
118
29
28
20
21
1.98
48102603--48102679
15
5.2
15
80
9
79
57
14
16
11
1.66
48102601--48102679
29
2.7
30
82
9
99
56
13
17
11
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48105601--48105776
46
3.8
46
77
10
187
29
28
21
21
1.98
48105609--48105780
93
1.8
93
91
0
281
28
29
21
20
1.98
48105652--48105795
46
3.1
46
72
14
134
29
29
19
21
1.98
48109362--48109431
27
2.6
27
95
2
113
31
28
12
27
1.93
48109362--48109459
28
3.5
28
90
2
135
31
28
13
26
1.94
48117534--48117631
28
3.5
28
90
2
135
31
28
13
26
1.94
48122551--48122612
21
3.0
21
80
4
81
35
19
9
35
1.85
48122551--48122611
10
5.9
10
77
11
61
34
19
9
36
1.85
48125279--48125304
12
2.2
12
100
0
52
23
38
30
7
1.83
48128374--48128596
40
5.5
39
80
9
218
28
15
24
31
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349