genome.fa.s1.2.7.7.80.10.50.1000.313.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  313  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104520074--104520138	28	2.3	27	76	7	67	63	0	7	29	1.22
104521377--104521433	30	1.9	30	96	0	105	45	0	33	21	1.52
104536726--104536784	29	2.0	29	96	0	109	40	13	11	33	1.81
104537939--104537992	23	2.4	21	82	11	63	61	3	0	35	1.14
104540563--104540656	43	2.1	43	81	13	111	6	30	1	61	1.28
104542868--104542923	26	2.2	25	81	15	62	41	3	0	55	1.17
104543497--104543568	33	2.2	33	83	11	87	50	16	5	27	1.68
104550048--104550086	18	2.2	18	86	9	53	33	0	10	56	1.33
104550978--104551015	18	2.3	16	86	13	51	23	0	0	76	0.79
104556353--104556391	5	7.6	5	82	5	51	41	0	17	41	1.50
104556984--104557040	24	2.3	24	78	3	60	17	26	22	33	1.96
104557000--104557047	24	2.0	24	83	0	60	12	25	22	39	1.89
104561592--104561758	46	3.5	46	75	12	156	28	28	16	25	1.97
104562825--104562907	20	4.0	21	83	9	98	37	26	22	13	1.91
104562825--104562907	43	2.0	40	83	6	103	37	26	22	13	1.91
104563110--104563191	28	2.9	28	88	1	128	45	31	3	19	1.68
104566013--104566213	47	4.2	47	79	9	199	28	15	25	29	1.96
104566174--104566267	49	1.9	48	84	2	125	27	12	26	32	1.93
104566234--104566334	42	2.4	42	85	3	132	29	10	26	32	1.90
104571558--104571617	25	2.4	25	82	0	66	35	23	21	20	1.96
104574849--104574916	24	2.8	23	71	8	64	19	32	5	42	1.75
104595884--104595934	11	4.8	11	72	18	54	66	1	0	31	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104595884--104595943	31	2.0	31	90	3	95	66	3	0	30	1.07
104596063--104596087	13	1.9	13	100	0	50	24	0	4	72	1.02
104597297--104597335	20	2.0	21	85	10	55	28	2	2	66	1.18
104602258--104602428	91	1.9	89	95	2	306	41	7	9	40	1.67
104602335--104602384	16	2.9	17	80	14	50	44	2	4	50	1.32
104602589--104602733	72	2.0	72	100	0	290	29	8	12	49	1.69
104605998--104606031	12	2.7	13	90	4	52	41	2	0	55	1.15
104609320--104609451	65	2.0	65	91	0	210	33	12	6	47	1.67
104609520--104609758	60	4.0	60	85	1	302	12	31	12	43	1.79
104609529--104609778	119	2.1	121	82	3	301	13	28	11	46	1.78
104614653--104614786	65	2.1	65	94	0	232	44	8	14	32	1.75
104618041--104618155	58	2.0	58	87	0	167	27	12	20	40	1.88
104618213--104618391	70	2.6	70	71	7	164	24	16	22	35	1.95
104618424--104618604	69	2.6	70	79	6	197	26	17	21	34	1.96
104625160--104625526	46	7.6	49	87	8	440	34	14	22	28	1.93
104625160--104625526	98	3.7	97	85	9	501	34	14	22	28	1.93
104625174--104625526	196	1.8	196	92	0	607	34	14	22	28	1.93
104625490--104625635	37	4.0	37	93	1	242	36	16	21	24	1.94
104625160--104625515	150	2.4	149	89	4	467	34	14	21	28	1.93
104626890--104627057	58	3.0	58	88	10	246	22	13	30	32	1.93
104626909--104626999	28	3.2	28	66	22	80	25	15	31	27	1.95
104626950--104627092	49	2.9	49	93	0	232	23	14	30	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104630218--104630584	46	7.6	49	87	8	440	34	14	22	28	1.93
104630218--104630584	98	3.7	97	85	9	501	34	14	22	28	1.93
104630232--104630584	196	1.8	196	92	0	607	34	14	22	28	1.93
104630548--104630692	37	4.0	37	93	3	242	37	16	21	24	1.94
104630218--104630573	150	2.4	149	89	4	467	34	14	21	28	1.93
104631785--104631907	42	2.9	42	80	0	120	39	19	23	17	1.92
104634151--104634202	21	2.5	21	96	0	95	21	25	9	44	1.82
104635179--104635251	30	2.5	30	88	2	112	30	13	23	32	1.93
104637271--104637302	5	6.2	5	96	3	55	21	0	0	78	0.76
104642062--104642098	13	2.8	13	95	0	65	32	13	5	48	1.65
104649611--104649666	21	2.8	20	80	2	58	35	19	25	19	1.95
104662389--104662443	9	6.7	9	89	10	75	29	0	0	70	0.87
104662384--104662442	18	3.7	16	87	12	86	28	0	0	71	0.87
104662384--104662442	7	7.6	7	92	7	64	28	0	0	71	0.87
104662384--104662435	16	3.1	16	81	8	68	28	0	0	71	0.87
104664928--104664953	6	4.3	6	100	0	52	46	0	19	34	1.50
104669796--104669994	47	4.2	46	80	5	168	30	27	16	25	1.97
104669862--104670014	47	3.2	47	84	2	182	34	26	13	24	1.93
104674102--104674162	30	2.0	30	90	0	95	24	3	11	60	1.46
104679236--104679277	16	2.7	17	86	13	56	23	4	9	61	1.45
104683930--104683954	5	5.0	5	100	0	50	60	0	0	40	0.97
104696145--104696581	218	2.0	215	84	4	574	37	13	19	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104701929--104702087	9	17.4	9	68	17	78	65	3	1	30	1.16
104701954--104702071	10	12.5	10	69	12	54	62	2	1	33	1.18
104701929--104702049	19	6.7	18	73	14	72	66	1	1	30	1.11
104701981--104702098	46	2.5	46	81	1	137	66	4	1	27	1.19
104701929--104702097	28	6.2	26	72	14	110	65	3	1	29	1.16
104702411--104702503	27	3.5	26	76	16	84	33	0	4	62	1.15
104702600--104702781	88	2.1	88	85	7	244	35	12	17	34	1.87
104704745--104704795	15	3.5	14	86	7	66	15	9	0	74	1.06
104704755--104704795	19	2.2	19	86	0	55	17	7	0	75	1.02
104704744--104704795	5	10.6	5	75	4	52	15	9	0	75	1.05
104705222--104705312	14	6.3	14	70	18	62	46	3	1	49	1.25
104705415--104705450	17	2.1	18	89	5	56	30	16	0	52	1.44
104706107--104706154	15	3.5	15	67	21	50	56	0	0	43	0.99
104706099--104706177	25	3.1	25	83	3	104	48	0	0	51	1.00
104710979--104711048	29	2.4	28	75	11	70	34	1	4	60	1.25
104719994--104720026	16	2.0	17	88	5	50	45	18	15	21	1.85
104720561--104720732	45	3.9	45	88	3	235	27	29	19	23	1.99
104724743--104724996	39	6.5	39	88	1	350	23	22	25	27	1.99
104731149--104731181	16	1.9	18	88	11	52	48	12	15	24	1.78
104731711--104731837	45	2.9	45	83	5	145	25	29	20	24	1.99
104741407--104741446	13	3.1	13	96	0	71	65	0	35	0	0.93
104741781--104742219	106	4.3	102	83	11	496	28	0	15	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104741818--104742207	206	1.9	197	83	10	491	29	1	15	54	1.48
104747299--104747335	5	7.4	5	100	0	74	81	0	0	18	0.70
104754595--104754658	27	2.4	27	86	5	85	26	21	31	20	1.98
104758485--104758907	69	6.0	68	88	7	596	26	5	3	64	1.32
104758495--104758914	215	2.0	215	89	4	636	26	5	3	64	1.32
104759083--104759134	20	2.5	21	79	17	63	21	9	1	67	1.29
104770764--104770807	22	2.0	22	82	8	54	38	13	18	29	1.89
104771034--104771255	40	5.6	40	92	1	358	29	26	22	22	1.99
104780322--104780445	62	2.0	62	93	3	214	34	13	25	26	1.93
104781602--104781769	47	3.6	46	74	18	152	28	19	29	22	1.98
104788782--104788869	39	2.2	41	82	11	103	57	0	5	36	1.22
104789319--104789390	19	3.9	18	87	10	103	36	13	11	38	1.81
104789312--104789390	35	2.2	37	86	13	121	35	15	10	39	1.81
104789333--104789388	17	3.5	15	88	9	60	35	16	10	37	1.83
104789769--104790121	83	4.2	83	93	0	589	27	20	20	32	1.97
104790045--104790519	119	4.0	119	94	0	806	29	19	17	33	1.95
104790511--104790690	44	4.1	44	74	9	179	28	25	15	30	1.96
104791570--104791611	8	5.5	8	77	11	52	0	14	0	85	0.59
104791568--104791609	21	2.0	21	95	4	77	0	16	0	83	0.65
104797542--104797585	17	2.8	15	78	21	54	63	0	2	34	1.07
104797533--104797617	42	2.0	43	82	11	104	60	0	5	34	1.21
104798071--104798132	17	3.6	17	91	4	106	35	12	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104798064--104798140	35	2.2	36	90	9	133	35	15	10	38	1.82
104798776--104798843	35	1.9	35	81	0	82	44	4	13	38	1.64
104801596--104801627	17	1.9	16	93	6	55	62	9	12	15	1.54
104803761--104803859	37	2.7	37	83	9	105	44	3	3	49	1.33
104803810--104803868	12	4.8	12	73	17	50	42	1	3	52	1.28
104803810--104803859	20	2.8	17	80	20	57	44	2	2	52	1.24
104806440--104806686	40	6.2	40	89	1	327	29	28	19	22	1.98
104810764--104810949	47	4.0	47	87	0	255	34	11	25	27	1.91
104811154--104811303	37	4.1	37	94	0	246	23	18	30	27	1.98
104812581--104813081	40	12.6	40	92	0	815	24	23	28	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349