genome.fa.s1.2.7.7.80.10.50.1000.338.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  338  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111810267--111810506	86	2.8	86	84	2	302	20	21	21	35	1.96
111810050--111810501	215	2.1	216	84	2	586	21	21	21	36	1.96
111810050--111810499	43	10.4	42	65	13	200	21	21	21	36	1.96
111811694--111811779	30	2.9	30	94	0	145	17	50	6	25	1.71
111812350--111812401	3	17.0	3	81	15	54	30	0	5	63	1.18
111820995--111821361	46	7.6	49	87	8	440	34	14	22	28	1.93
111820995--111821361	98	3.7	97	85	9	501	34	14	22	28	1.93
111821009--111821361	196	1.8	196	92	0	607	34	14	22	28	1.93
111821325--111821470	37	4.0	37	93	1	242	36	16	21	24	1.94
111820995--111821350	150	2.4	149	89	4	467	34	14	21	28	1.93
111823367--111823409	22	2.0	22	86	4	61	11	25	9	53	1.67
111823895--111823938	22	2.0	22	82	8	54	18	25	2	54	1.55
111827548--111827870	3	106.7	3	72	16	154	62	2	4	30	1.29
111827640--111827682	16	2.6	17	82	10	54	65	0	4	30	1.13
111827782--111827826	16	2.8	17	83	10	58	64	0	4	31	1.13
111830355--111830393	15	2.5	15	87	4	51	51	10	0	38	1.36
111834219--111834296	22	4.1	18	70	19	50	60	0	1	38	1.05
111837319--111837379	30	2.1	31	84	9	83	45	11	4	37	1.62
111844682--111844714	14	2.3	15	89	5	50	42	15	0	42	1.46
111850856--111850941	42	2.0	42	93	0	145	23	11	13	51	1.74
111853409--111853519	40	2.8	40	95	1	197	22	20	26	30	1.98
111855453--111855486	13	2.5	13	90	4	50	26	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111858918--111858982	24	2.6	27	79	16	77	40	0	0	60	0.97
111861745--111861774	11	2.7	11	94	0	51	50	10	16	23	1.75
111861757--111861791	17	2.1	17	100	0	70	48	11	17	22	1.79
111868182--111868217	17	2.1	17	94	0	63	44	2	2	50	1.31
111873264--111873299	18	2.0	18	94	0	63	47	2	0	50	1.15
111879980--111880011	9	3.6	9	91	0	55	25	9	21	43	1.82
111883525--111883555	4	7.8	4	100	0	62	51	0	0	48	1.00
111887027--111887084	18	3.2	18	72	18	57	34	1	3	60	1.24
111889226--111889284	22	2.7	21	75	12	57	57	1	3	37	1.25
111898211--111898235	13	1.9	13	100	0	50	32	4	24	40	1.73
111899392--111899490	42	2.3	43	84	1	128	26	16	24	33	1.96
111899353--111899509	43	3.7	43	74	12	117	24	15	26	33	1.95
111905677--111905766	37	2.4	38	83	5	119	58	8	8	23	1.56
111913018--111913266	50	4.8	50	85	4	284	20	29	24	26	1.99
111913017--111913266	100	2.4	104	88	6	357	20	29	24	26	1.99
111913361--111913392	13	2.5	13	94	0	55	56	12	0	31	1.37
111913604--111913661	30	1.9	30	89	0	89	31	24	3	41	1.71
111920607--111920855	50	4.8	50	85	4	284	20	29	24	26	1.99
111920606--111920855	100	2.4	104	88	6	357	20	29	24	26	1.99
111920950--111920981	13	2.5	13	94	0	55	56	12	0	31	1.37
111921193--111921250	30	1.9	30	89	0	89	31	24	3	41	1.71
111927921--111928043	56	2.2	56	91	1	194	31	8	13	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111937980--111938045	30	2.2	30	86	0	87	37	3	24	34	1.71
111942096--111942128	15	2.2	15	100	0	66	39	0	12	48	1.40
111944978--111945037	17	3.5	17	71	15	52	63	3	0	33	1.11
111951621--111951649	9	3.2	9	100	0	58	62	0	0	37	0.96
111956440--111956570	35	3.6	35	76	11	129	33	22	11	32	1.90
111960633--111960999	46	7.6	49	87	8	440	34	14	22	28	1.93
111960633--111960999	98	3.7	97	85	9	501	34	14	22	28	1.93
111960647--111960999	196	1.8	196	92	0	607	34	14	22	28	1.93
111960963--111961108	37	4.0	37	91	1	233	36	16	22	24	1.94
111960633--111960988	150	2.4	149	89	4	485	34	14	21	28	1.93
111962362--111962554	49	3.9	49	93	0	305	24	14	29	31	1.95
111963618--111964266	130	5.0	130	90	0	960	36	18	18	27	1.94
111964534--111964596	31	2.0	31	100	0	126	55	22	6	15	1.63
111965425--111965486	28	2.2	28	82	8	72	53	8	12	25	1.66
111966916--111967320	133	3.0	133	87	0	560	28	23	19	28	1.98
111967348--111967532	64	2.9	64	95	1	318	36	11	18	33	1.86
111975523--111975563	19	2.1	20	86	13	59	43	12	19	24	1.85
111978274--111978792	130	4.0	130	90	1	745	36	17	18	27	1.93
111979926--111979987	28	2.2	28	82	8	72	53	9	12	24	1.69
111981123--111981149	14	1.9	14	100	0	54	33	0	0	66	0.92
111986305--111986363	29	2.0	29	83	0	73	25	0	10	64	1.25
111989303--111989383	27	2.9	27	81	17	94	20	32	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111989300--111989383	29	3.0	28	82	7	107	21	32	22	23	1.98
111989309--111989413	29	3.7	29	83	5	106	19	31	26	22	1.98
111991439--111991470	15	2.1	15	94	0	55	84	0	0	15	0.63
111993266--111993417	45	3.5	44	78	9	127	28	19	22	29	1.98
111993439--111993557	44	2.7	45	72	11	111	29	22	18	29	1.97
111993536--111993669	52	2.6	52	84	7	173	30	17	16	35	1.93
111996231--111996499	46	5.6	46	89	5	367	34	14	22	28	1.93
111996231--111996536	98	3.3	92	82	14	360	35	14	21	28	1.93
111996291--111996499	52	4.1	51	86	9	302	35	14	22	27	1.93
111996463--111996608	37	4.0	37	92	1	233	36	16	21	25	1.94
111997862--111998054	49	3.9	49	95	0	323	23	15	30	31	1.95
112001177--112001445	46	5.6	46	89	5	367	34	14	22	28	1.93
112001177--112001482	98	3.3	92	82	14	360	35	14	21	28	1.93
112001237--112001445	52	4.1	51	86	9	302	35	14	22	27	1.93
112001409--112001554	37	4.0	37	92	1	233	36	16	21	25	1.94
112011355--112011484	55	2.4	55	77	2	136	17	26	24	30	1.97
112013342--112013507	18	9.3	18	74	15	130	36	15	14	33	1.88
112013425--112013519	36	2.6	36	75	5	93	35	14	12	36	1.85
112014587--112014756	27	6.3	27	79	1	180	42	24	5	27	1.76
112014587--112014753	54	3.1	54	85	0	217	43	23	5	27	1.75
112014603--112014785	27	6.8	27	77	6	156	43	23	5	27	1.76
112014767--112014827	27	2.3	27	82	0	77	37	16	19	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112014775--112014828	27	2.0	27	88	0	81	33	20	22	24	1.97
112015243--112015314	37	1.9	37	88	5	110	27	19	11	41	1.85
112015223--112015322	6	16.3	6	72	15	62	24	17	13	46	1.83
112015292--112015337	24	1.9	24	86	0	65	21	13	10	54	1.69
112015962--112016096	45	3.0	44	94	2	225	40	22	18	19	1.92
112016903--112016963	21	2.9	21	79	13	63	47	18	0	34	1.49
112036847--112036983	29	4.7	30	72	13	108	28	29	18	22	1.98
112036847--112037015	58	2.9	58	95	0	295	28	28	19	23	1.98
112036913--112037012	29	3.4	29	74	10	114	30	25	21	24	1.99
112037181--112037302	43	2.8	43	93	0	217	31	33	22	11	1.90
112039917--112040014	25	3.8	26	93	4	155	27	23	22	26	1.99
112040064--112040130	20	3.3	21	87	8	88	34	19	10	35	1.86
112041511--112041545	15	2.4	15	90	4	54	82	0	17	0	0.66
112062892--112062978	34	2.6	34	90	3	133	29	4	3	62	1.32
112063075--112063114	20	1.9	20	85	10	53	40	5	0	55	1.22
112065129--112065194	29	2.2	29	83	2	78	43	10	9	36	1.71
112066852--112066926	36	2.1	36	92	0	123	44	8	20	28	1.79
112082990--112083036	21	2.2	22	92	3	78	21	19	38	21	1.94
112084946--112084994	24	2.0	25	92	4	82	36	14	12	36	1.83
112087262--112087299	19	2.0	20	85	10	53	34	18	13	34	1.89
112088576--112088614	17	2.2	18	86	4	53	53	0	2	43	1.14
112089720--112089751	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112094330--112094387	30	1.9	30	82	6	73	17	24	32	25	1.96
112097095--112097235	15	10.1	14	69	17	62	58	2	3	34	1.30
112097175--112097235	30	2.0	30	84	6	79	62	3	1	32	1.21
112097191--112097226	16	2.2	16	95	0	63	66	0	2	30	1.06
112097095--112097228	10	12.0	11	68	21	50	58	2	3	34	1.31
112097317--112097370	25	2.2	25	80	9	67	46	0	7	46	1.31
112100520--112100562	18	2.4	18	96	0	77	51	0	2	46	1.13
112100641--112100683	19	2.2	20	95	4	79	48	9	11	30	1.71
112109551--112109577	13	2.1	13	100	0	54	14	25	37	22	1.93
112117122--112117147	9	2.9	9	100	0	52	11	19	23	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349