genome.fa.s1.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  143  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45742859--45742898	18	2.2	18	86	0	53	60	0	0	40	0.97
45743629--45743664	14	2.6	15	87	12	51	66	0	0	33	0.92
45747731--45747772	22	1.9	22	90	0	66	23	30	2	42	1.67
45747724--45747774	11	4.7	10	81	13	57	25	33	1	39	1.67
45753204--45753463	126	2.1	127	86	3	364	28	17	16	37	1.92
45753521--45753649	66	2.0	64	89	3	195	43	11	3	41	1.56
45753725--45753766	19	2.3	19	87	4	59	54	35	0	9	1.33
45753792--45754152	179	2.0	180	97	0	679	28	20	22	28	1.98
45755297--45755350	22	2.5	21	82	5	63	75	7	0	16	1.01
45757027--45757073	21	2.2	22	84	3	60	23	14	12	48	1.78
45762570--45762596	2	13.5	2	100	0	54	51	0	0	48	1.00
45763010--45763134	62	2.0	62	95	0	223	21	16	16	46	1.84
45763941--45763967	13	2.1	13	100	0	54	22	22	25	29	1.99
45768306--45768576	62	4.4	62	83	3	246	24	23	29	22	1.99
45774306--45774370	18	3.7	18	76	12	55	44	1	0	53	1.09
45774481--45774527	23	2.0	23	84	8	60	51	0	8	40	1.33
45782226--45782389	87	1.9	86	82	3	204	25	14	23	37	1.92
45783294--45783411	55	2.1	57	80	4	132	36	17	14	31	1.90
45793133--45793270	24	5.6	24	72	9	82	29	27	15	26	1.96
45793192--45793305	50	2.3	50	89	0	174	32	28	14	25	1.94
45793126--45793285	25	6.5	25	75	7	112	29	27	16	26	1.97
45793714--45793777	33	1.9	33	96	0	119	34	25	6	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45794719--45794749	16	1.9	16	100	0	62	9	25	19	45	1.81
45800413--45800484	37	1.9	37	97	0	135	29	52	0	18	1.45
45800468--45800505	18	2.2	18	90	4	60	26	50	0	23	1.50
45800889--45800942	19	2.9	18	84	15	67	35	0	1	62	1.06
45800774--45800916	63	2.3	63	81	12	168	25	4	5	64	1.34
45800897--45800940	14	3.1	14	90	3	61	34	0	2	63	1.07
45801385--45801623	126	1.9	126	92	1	408	30	16	15	37	1.90
45802947--45802993	19	2.5	19	86	6	60	25	25	10	38	1.88
45803188--45803232	21	2.1	21	84	8	56	37	24	22	15	1.93
45805794--45805872	13	5.8	14	75	15	76	78	1	20	0	0.82
45805797--45805883	11	7.1	11	72	22	59	77	2	20	0	0.89
45805796--45805874	11	6.4	12	75	15	63	78	1	20	0	0.82
45805808--45805874	31	2.2	29	81	10	71	77	1	20	0	0.85
45805793--45805884	25	3.6	26	81	8	100	77	2	20	0	0.88
45807132--45807761	179	3.5	179	91	1	987	30	22	21	24	1.99
45807223--45807687	90	5.2	89	68	14	310	29	23	21	25	1.99
45807144--45807597	89	5.1	89	66	17	285	31	21	21	24	1.98
45807632--45807922	132	2.2	132	95	1	512	28	23	22	25	1.99
45807936--45808242	87	3.5	88	84	5	349	37	20	18	23	1.94
45808028--45808178	44	3.4	43	73	13	146	37	19	17	24	1.94
45807972--45808190	44	5.0	44	69	16	141	37	19	18	24	1.94
45808195--45808561	85	4.3	86	89	3	546	27	23	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45808818--45808922	29	3.4	29	75	15	86	31	48	0	19	1.55
45808847--45808916	35	2.0	35	94	0	122	28	51	0	20	1.47
45808900--45808937	18	2.2	18	90	4	60	26	50	0	23	1.50
45809212--45809332	63	1.9	63	83	8	158	25	5	5	62	1.40
45809323--45809352	11	2.6	12	94	5	53	33	0	0	66	0.92
45809806--45810049	126	1.9	126	95	0	443	29	17	15	37	1.91
45811237--45811301	2	32.5	2	100	0	130	50	0	49	0	1.00
45814995--45815082	38	2.3	38	82	9	99	37	37	10	14	1.81
45816459--45816508	8	5.6	9	75	15	50	74	0	2	24	0.93
45816459--45816506	14	3.5	13	80	11	53	75	0	2	22	0.91
45816459--45816508	18	2.7	18	87	3	64	74	0	2	24	0.93
45822910--45822958	5	9.8	5	84	0	62	36	24	2	36	1.67
45824890--45825016	42	3.0	42	76	0	128	26	26	15	30	1.96
45831358--45831409	20	2.6	20	96	0	95	17	32	34	15	1.91
45832665--45832808	42	3.4	42	71	0	108	27	27	16	28	1.97
45832751--45832831	42	1.9	42	82	5	101	34	27	11	27	1.90
45833570--45833595	9	2.9	9	100	0	52	65	23	0	11	1.25
45850254--45850302	25	2.0	25	83	0	62	36	6	14	42	1.70
45857672--45857936	94	2.8	92	84	7	327	29	19	27	23	1.98
45857672--45857936	46	5.6	47	75	9	243	29	19	27	23	1.98
45862679--45862705	4	6.8	4	100	0	54	22	0	0	77	0.76
45874421--45874593	45	3.9	46	81	7	180	26	27	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45874586--45874756	38	4.5	38	84	1	200	32	25	20	22	1.98
45875053--45875187	43	3.1	44	83	6	184	28	29	17	24	1.97
45883153--45883199	15	3.1	14	77	22	51	68	2	2	27	1.13
45883444--45883664	3	69.3	3	67	24	84	59	0	4	34	1.24
45883494--45883671	7	25.6	7	69	20	90	60	0	2	36	1.16
45883491--45883591	20	4.8	20	71	23	73	58	0	2	38	1.13
45883476--45883676	46	4.5	46	75	18	153	60	1	2	35	1.21
45883493--45883657	35	4.7	35	72	21	118	60	0	3	36	1.17
45883493--45883671	14	11.8	15	74	17	115	60	0	2	36	1.16
45883501--45883683	44	4.1	44	71	13	133	61	1	2	34	1.18
45897814--45897851	15	2.6	15	83	4	51	63	0	2	34	1.09
45898171--45898213	12	3.4	13	84	12	54	53	0	6	39	1.28
45898154--45898325	26	6.7	27	75	17	120	62	0	1	35	1.10
45898210--45898326	5	21.8	5	73	17	58	66	0	0	32	0.98
45898210--45898327	8	14.6	8	76	13	91	66	0	0	33	0.98
45898153--45898327	15	11.4	16	73	18	142	62	0	1	35	1.10
45898197--45898346	44	3.4	44	76	16	148	64	2	0	33	1.05
45910658--45911304	48	13.7	48	92	4	1046	35	6	26	31	1.82
45910658--45911629	96	10.4	96	82	8	1170	35	6	27	30	1.83
45911186--45911432	124	2.0	123	91	0	404	34	8	26	30	1.86
45911309--45911629	48	6.7	48	94	0	534	34	7	27	29	1.85
45915184--45915212	14	2.0	15	93	6	51	20	0	27	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45915730--45915759	15	2.0	15	93	0	51	20	0	23	56	1.42
45917101--45917269	46	3.7	47	78	16	185	21	21	28	28	1.98
45917103--45917277	44	3.9	44	79	12	210	21	20	29	29	1.98
45920754--45920799	23	2.0	23	95	0	83	45	4	15	34	1.66
45922838--45923019	94	1.9	94	85	0	247	31	19	12	36	1.89
45922932--45923167	63	3.7	62	71	9	197	32	18	12	36	1.88
45923062--45923203	62	2.3	63	81	7	173	31	19	12	35	1.90
45927133--45927173	20	2.0	21	90	4	66	36	2	14	46	1.58
45927630--45927663	16	2.1	16	88	0	50	44	0	20	35	1.52
45930388--45930501	29	4.0	29	82	6	126	28	29	16	25	1.97
45930379--45930489	58	1.9	58	87	1	161	27	30	17	25	1.97
45931959--45931990	16	2.0	16	100	0	64	12	6	31	50	1.65
45938183--45938450	46	5.7	47	79	9	257	24	28	18	28	1.98
45938179--45938451	94	2.9	92	80	13	317	24	28	18	28	1.98
45943300--45943475	46	3.8	46	75	15	164	19	20	30	29	1.97
45943298--45943466	93	1.8	93	89	0	266	20	20	29	28	1.98
45948415--45948590	46	3.8	46	75	15	164	19	20	30	29	1.97
45948413--45948581	93	1.8	93	89	0	266	20	20	29	28	1.98
45953532--45953701	92	1.8	93	92	1	288	21	21	30	27	1.98
45956648--45956727	15	5.4	15	78	12	85	10	16	13	60	1.59
45956639--45956726	30	3.0	30	80	11	92	10	15	15	57	1.64
45959114--45959289	46	3.8	46	79	12	198	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45959110--45959281	93	1.8	93	92	0	290	21	21	29	27	1.99
45964083--45964177	12	7.9	12	72	17	56	40	2	4	53	1.32
45966585--45966664	32	2.7	29	76	14	72	47	8	2	41	1.48
45972694--45972761	28	2.4	27	82	9	73	64	1	2	30	1.17
45975031--45975066	18	2.1	18	89	5	56	36	8	0	55	1.30
45980888--45980935	25	1.9	25	100	0	96	27	25	25	22	2.00
45980893--45980949	25	2.3	25	87	0	78	26	26	21	26	1.99
45981059--45981138	36	2.2	36	97	2	151	46	16	5	32	1.68
45985415--45985508	33	2.6	37	74	22	92	43	1	4	51	1.28
45985437--45985517	33	2.5	33	82	11	87	46	0	6	46	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349