genome.fa.s1.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  104  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32562704--32562746	21	2.0	21	95	0	77	48	0	25	25	1.51
32564790--32564841	19	2.7	20	96	3	97	23	11	15	50	1.76
32565228--32565346	46	2.6	46	90	0	184	42	22	9	25	1.83
32566300--32566360	32	1.9	32	86	6	88	50	16	4	27	1.65
32568526--32568590	30	2.2	30	97	2	123	52	15	6	26	1.66
32570249--32570318	28	2.5	28	88	9	99	27	14	27	31	1.95
32574410--32574549	51	2.8	49	83	3	172	26	21	25	27	1.99
32577554--32577607	15	3.7	15	75	20	51	7	12	18	61	1.54
32580072--32580259	49	3.8	49	82	2	241	26	18	26	29	1.98
32580067--32580254	100	1.9	100	95	0	340	25	19	26	29	1.98
32582461--32582564	55	2.0	51	87	11	147	48	7	30	13	1.71
32584157--32584200	19	2.4	19	85	7	56	50	0	9	40	1.34
32586593--32586640	20	2.5	20	78	18	57	29	16	25	29	1.97
32588842--32588892	14	3.8	13	77	15	50	39	9	1	49	1.47
32591329--32591445	48	2.5	46	79	10	112	35	23	17	23	1.95
32594215--32594291	14	5.0	15	71	20	52	42	14	9	33	1.77
32594231--32594270	20	2.0	20	90	0	62	50	12	10	27	1.72
32594219--32594285	34	1.9	35	90	3	109	46	13	8	31	1.74
32594611--32594701	44	2.1	44	97	0	173	19	21	28	29	1.98
32595888--32595996	20	5.4	20	81	4	71	39	16	7	36	1.77
32596170--32596256	23	3.6	25	76	16	87	29	17	24	28	1.97
32596220--32596289	22	3.4	20	78	15	72	32	21	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32596235--32596271	18	2.1	18	94	0	65	35	24	13	27	1.93
32596196--32596301	22	5.0	21	74	18	69	33	18	20	26	1.96
32596282--32596365	24	3.5	23	70	14	71	34	16	22	26	1.95
32599642--32599805	42	3.8	42	78	3	175	28	17	23	30	1.97
32603822--32603859	19	2.0	19	85	10	51	42	0	15	42	1.47
32604017--32604073	29	2.0	29	89	6	89	43	0	3	52	1.18
32604137--32604202	32	2.1	31	91	8	107	40	0	6	53	1.26
32604255--32604299	23	2.0	22	82	4	54	33	0	11	55	1.35
32604505--32604539	18	1.9	18	88	0	52	82	5	2	8	0.91
32605181--32605213	15	2.2	15	94	0	57	21	0	15	63	1.30
32607821--32607881	32	1.9	32	100	0	122	37	24	6	31	1.81
32608210--32608272	28	2.2	29	81	13	69	39	1	20	38	1.62
32611265--32611330	31	2.1	31	82	0	78	43	9	19	27	1.81
32614133--32614173	20	2.0	20	85	0	55	41	4	2	51	1.36
32621719--32621757	20	2.1	19	90	9	62	58	5	5	30	1.41
32621981--32622068	18	4.9	18	75	14	67	72	3	3	20	1.13
32622177--32622218	21	2.0	21	86	9	59	69	0	7	23	1.13
32622270--32622296	14	1.9	14	100	0	54	55	0	0	44	0.99
32622275--32622414	37	3.9	37	76	10	114	55	2	1	40	1.23
32622375--32622468	22	4.2	22	69	18	61	56	3	1	39	1.22
32622458--32622529	9	7.9	9	73	7	65	80	2	4	12	0.96
32622464--32622529	17	3.8	17	78	9	53	81	3	4	10	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32622555--32622617	10	6.9	10	68	25	50	76	0	11	12	1.03
32622555--32622618	26	2.4	26	94	5	110	76	0	10	12	1.02
32625326--32625432	56	1.9	55	94	1	187	42	11	8	38	1.71
32627894--32628072	46	3.8	46	76	10	170	27	17	30	24	1.97
32627845--32628015	46	3.7	46	79	4	182	28	19	28	23	1.99
32627845--32628105	140	1.9	140	81	7	325	27	18	29	24	1.98
32629259--32629298	21	1.9	21	84	0	53	17	37	22	22	1.94
32635549--32635731	47	3.9	47	81	11	207	27	15	31	25	1.96
32640704--32640785	28	2.9	28	87	0	110	34	10	25	29	1.90
32642977--32643009	2	16.5	2	100	0	66	51	0	0	48	1.00
32645836--32645861	13	2.0	13	100	0	52	30	30	0	38	1.58
32645820--32645854	17	2.1	17	88	0	52	25	28	0	45	1.54
32649007--32649033	14	1.9	14	100	0	54	29	14	18	37	1.91
32650807--32650889	40	2.1	40	86	0	112	25	16	27	30	1.97
32650883--32650971	28	3.2	27	75	7	90	35	8	22	32	1.85
32653771--32653802	15	2.2	15	94	5	57	25	0	9	65	1.22
32660024--32660053	13	2.3	13	100	0	60	50	10	16	23	1.75
32670723--32670914	51	3.8	51	83	0	197	25	17	27	30	1.97
32670800--32670958	51	3.1	51	82	1	176	26	17	28	27	1.98
32676102--32676318	40	5.5	40	79	8	194	23	22	28	26	1.99
32676102--32676292	80	2.4	79	84	6	235	21	21	29	26	1.99
32676103--32676318	119	1.8	119	81	7	269	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32684278--32684469	51	3.8	51	83	0	197	25	17	27	30	1.97
32684355--32684513	51	3.1	51	82	1	176	26	17	28	27	1.98
32689822--32690037	40	5.4	40	81	6	217	23	22	28	26	1.99
32701030--32701070	11	4.0	10	87	12	57	78	0	0	21	0.76
32701030--32701083	14	3.9	14	79	18	51	77	1	0	20	0.86
32701030--32701083	24	2.2	24	84	12	67	77	1	0	20	0.86
32707237--32707297	30	2.0	30	100	0	122	37	19	13	29	1.90
32717559--32717687	49	2.6	49	75	2	125	23	27	18	30	1.98
32722877--32723180	46	6.6	44	80	9	292	22	30	20	27	1.98
32722873--32723178	138	2.2	138	93	1	515	22	30	20	27	1.98
32723897--32723921	12	2.1	12	100	0	50	60	16	8	16	1.58
32726400--32726460	26	2.3	27	83	13	83	39	27	8	24	1.84
32726571--32726671	27	3.7	27	88	2	132	21	24	18	34	1.96
32736417--32736471	7	7.7	7	82	11	51	60	1	1	36	1.18
32736432--32736471	13	3.0	13	85	14	55	65	0	2	32	1.06
32736438--32736471	6	5.3	6	86	13	50	67	0	0	32	0.91
32747840--32748000	80	2.0	80	100	0	322	31	12	24	31	1.92
32748031--32748057	5	5.4	5	100	0	54	22	0	0	77	0.76
32749161--32749315	57	2.7	58	78	5	161	30	16	21	30	1.96
32753054--32753278	49	4.5	49	84	3	315	29	27	18	25	1.98
32761794--32761963	46	3.7	45	74	7	162	30	30	18	21	1.97
32761802--32761973	93	1.8	93	87	0	254	28	29	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32766181--32766208	14	2.0	14	100	0	56	64	7	7	21	1.43
32766434--32766460	9	3.0	9	100	0	54	55	22	0	22	1.44
32770427--32770467	20	2.0	20	100	0	82	9	31	34	24	1.88
32772504--32772598	47	2.0	47	100	0	190	35	4	14	45	1.65
32772597--32772699	51	2.0	51	96	0	188	33	9	20	36	1.85
32775125--32775167	12	3.2	13	80	12	52	30	9	4	55	1.52
32776967--32777096	47	2.8	47	84	0	170	33	16	25	24	1.96
32779481--32779545	30	2.1	30	81	13	71	49	6	4	40	1.48
32782179--32782233	24	2.3	24	84	6	67	32	12	23	30	1.92
32782376--32782457	26	3.2	25	84	3	83	32	23	14	29	1.94
32782376--32782451	39	1.9	39	84	5	100	31	21	15	31	1.94
32782376--32782458	13	6.4	13	77	4	69	32	22	14	30	1.94
32787767--32787969	47	4.3	47	89	0	298	32	8	30	29	1.88
32790236--32790632	40	9.9	40	88	1	553	26	21	25	25	2.00
32794580--32794782	47	4.3	47	91	0	316	32	8	30	28	1.88
32796915--32796989	38	2.0	38	86	5	107	30	18	26	24	1.98
32797047--32797431	203	1.9	201	87	2	556	25	21	27	26	1.99
32797047--32797431	40	9.6	40	88	2	538	25	21	27	26	1.99
32797629--32797737	57	1.9	57	88	1	164	23	19	28	28	1.98
32801394--32801596	47	4.3	47	90	0	307	32	9	30	28	1.88
32804151--32804438	48	6.0	48	79	2	317	27	27	18	27	1.98
32804155--32804438	96	2.9	96	89	1	408	26	27	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32804159--32804438	144	1.9	145	84	5	379	27	27	17	27	1.98
32812695--32812906	40	5.3	40	85	3	223	24	19	26	29	1.99
32817098--32817244	44	3.4	43	79	4	152	40	20	17	22	1.92
32821039--32821080	16	2.6	16	84	0	57	38	26	21	14	1.91
32820860--32821053	38	5.1	38	78	0	208	35	26	21	16	1.95
32820860--32821067	76	2.8	76	83	0	247	36	26	20	16	1.94
32823507--32823690	43	4.3	43	86	2	219	28	17	26	27	1.98
32823490--32823695	86	2.4	86	81	2	236	31	18	25	25	1.98
32823767--32823832	31	2.1	31	88	0	96	48	21	10	19	1.79
32824082--32824131	21	2.4	21	86	0	73	6	48	18	28	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349