genome.fa.s1.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  146  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46582779--46582808	16	1.9	16	93	6	53	50	0	13	36	1.42
46587785--46587927	54	2.6	54	87	0	196	37	16	20	26	1.93
46587785--46587907	27	4.6	27	82	4	158	36	17	20	26	1.94
46588129--46588198	25	2.8	25	91	0	104	28	25	21	24	1.99
46588418--46588500	31	2.7	31	96	3	152	28	16	26	27	1.97
46590471--46590646	46	3.8	45	79	11	196	21	21	28	28	1.98
46590468--46590638	93	1.8	93	92	2	290	21	21	29	28	1.98
46593578--46593652	27	2.8	27	76	8	71	36	25	6	32	1.82
46593648--46593770	54	2.3	54	86	0	165	37	18	18	25	1.94
46593655--46593789	27	5.0	27	81	0	144	37	18	20	24	1.94
46593992--46594061	25	2.8	25	91	0	104	28	25	21	24	1.99
46593992--46594074	25	3.4	25	82	11	84	31	22	21	24	1.98
46594281--46594363	31	2.7	31	94	3	143	28	15	26	28	1.96
46594377--46594431	29	1.9	28	88	3	83	25	23	23	27	2.00
46596648--46596687	21	2.0	21	85	14	57	15	40	25	20	1.90
46598190--46598369	48	3.8	47	86	4	227	33	26	17	23	1.96
46598187--46598369	96	1.9	96	86	2	260	33	25	17	22	1.96
46598927--46598965	21	1.9	20	89	5	60	46	20	0	33	1.51
46607107--46607293	38	4.8	38	85	6	207	22	22	24	30	1.99
46607107--46607284	76	2.3	77	85	5	234	24	23	24	28	1.99
46615092--46615233	38	3.7	37	82	7	151	22	20	24	32	1.98
46615092--46615235	76	1.9	76	85	2	200	22	20	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46617081--46617275	48	3.8	48	74	15	174	32	26	17	23	1.97
46617088--46617200	60	1.9	60	94	0	199	31	27	17	23	1.97
46619733--46619806	29	2.6	29	86	4	96	27	16	31	25	1.96
46624043--46624180	40	3.5	40	89	4	183	23	23	28	24	1.99
46632212--46632389	40	4.5	40	88	4	229	24	22	26	25	2.00
46633801--46633934	27	5.0	27	76	5	74	26	25	14	34	1.94
46633802--46633915	54	2.1	54	82	6	142	25	23	14	35	1.93
46633835--46633940	54	2.0	54	83	3	133	27	25	13	33	1.93
46633836--46633940	27	3.9	27	78	5	86	27	25	12	34	1.92
46636310--46636355	22	2.1	22	95	0	83	54	0	17	28	1.43
46649035--46649075	21	2.0	21	95	0	73	60	14	4	19	1.51
46649038--46649090	21	2.5	20	82	14	63	60	13	9	16	1.58
46653184--46653380	95	2.1	95	96	0	358	36	13	22	27	1.92
46658174--46658419	49	4.9	50	81	4	264	26	19	24	29	1.98
46668250--46668430	49	3.7	49	83	4	229	24	16	28	30	1.96
46668249--46668430	99	1.8	99	91	0	301	24	15	28	30	1.96
46674185--46674366	37	4.9	37	95	0	328	25	30	19	24	1.98
46674513--46674804	48	6.0	48	89	4	451	31	25	5	36	1.80
46674513--46674804	98	3.0	98	93	2	489	31	25	5	36	1.80
46674516--46674804	146	2.0	147	91	4	474	31	25	5	36	1.80
46678257--46678615	40	9.0	40	86	0	459	28	27	20	22	1.99
46679877--46680066	37	4.9	37	84	11	236	25	32	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46679878--46680065	83	2.4	79	87	7	260	25	32	17	23	1.97
46679962--46680055	46	2.0	46	97	0	179	23	31	20	24	1.98
46680215--46680358	50	2.9	49	90	2	236	31	26	5	36	1.79
46682896--46683070	49	3.5	47	80	5	179	27	18	23	30	1.97
46685816--46685966	28	5.4	28	92	1	223	25	11	28	33	1.92
46694050--46694200	28	5.4	28	92	1	223	25	11	28	33	1.92
46696469--46696616	79	1.9	80	88	4	228	25	22	27	25	2.00
46696469--46696639	79	2.2	79	85	6	222	26	22	26	24	2.00
46696469--46696616	40	3.7	40	87	5	228	25	22	27	25	2.00
46701461--46701615	67	2.3	68	92	3	260	18	28	21	32	1.96
46712107--46712180	22	3.3	22	64	17	62	29	10	31	28	1.91
46712036--46712348	47	6.7	47	91	2	474	31	8	31	28	1.87
46712036--46712348	139	2.2	138	89	3	477	31	8	31	28	1.87
46712467--46712544	36	2.1	37	90	2	122	24	19	30	25	1.98
46713734--46713879	43	3.4	43	100	0	292	22	15	35	26	1.94
46713861--46713934	29	2.6	29	89	4	105	25	16	32	25	1.96
46714321--46714477	40	3.9	40	89	0	233	26	22	26	24	2.00
46714242--46714471	80	2.9	80	81	5	225	26	23	26	24	2.00
46714242--46714472	120	1.9	120	82	5	288	25	22	26	24	2.00
46718677--46719038	47	7.7	47	91	1	559	32	9	30	27	1.89
46718677--46719038	139	2.6	140	91	1	566	32	9	30	27	1.89
46718888--46718963	22	3.3	22	64	10	62	30	11	30	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46719157--46719236	37	2.2	37	86	4	108	25	17	30	27	1.97
46720952--46721001	26	1.9	26	88	8	75	46	0	20	34	1.51
46723442--46723600	43	3.7	42	81	9	180	23	17	27	31	1.97
46730897--46731054	43	3.7	43	78	12	173	25	19	24	30	1.98
46740708--46740891	43	4.3	43	86	2	235	30	29	17	21	1.97
46741050--46741097	20	2.4	21	82	10	64	68	6	2	22	1.23
46742936--46742984	24	2.0	24	100	0	98	42	20	8	28	1.80
46746376--46746402	14	1.9	14	100	0	54	70	0	14	14	1.17
46748706--46748744	14	2.7	14	88	4	51	38	43	0	17	1.50
46748823--46748913	14	6.0	14	69	16	56	43	29	1	25	1.61
46749072--46749277	41	5.1	41	80	7	215	20	21	19	37	1.94
46749072--46749278	79	2.6	80	78	7	222	20	21	19	37	1.94
46756484--46756559	21	3.5	20	71	16	62	23	13	26	36	1.91
46756488--46756578	45	2.0	45	91	0	146	26	13	24	36	1.92
46756940--46757026	43	2.0	43	95	0	156	45	3	22	27	1.68
46775327--46775614	48	6.0	48	96	1	526	34	6	28	30	1.82
46775327--46775614	142	2.0	143	95	1	524	34	6	28	30	1.82
46775327--46775605	94	2.9	94	96	1	513	34	6	28	31	1.82
46775755--46775857	37	2.8	37	90	0	170	23	18	32	26	1.97
46780766--46780988	99	2.3	95	83	8	256	24	30	18	26	1.98
46780716--46780990	48	5.7	48	77	9	224	24	30	18	26	1.98
46793958--46794013	26	2.2	26	83	6	69	26	17	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46801555--46801678	43	2.9	44	85	2	144	33	28	15	22	1.94
46813286--46813326	3	13.7	3	100	0	82	0	31	0	68	0.90
46814707--46814794	43	2.0	43	97	0	167	50	18	10	21	1.76
46814722--46814790	22	3.2	22	60	12	52	50	17	7	24	1.71
46817412--46817673	39	6.7	40	86	7	310	26	22	26	24	2.00
46824159--46824235	40	1.9	40	83	0	100	37	20	15	25	1.92
46826084--46826203	59	2.0	59	100	0	240	52	8	11	27	1.66
46827498--46827523	12	2.2	12	100	0	52	50	7	15	26	1.71
46839885--46839935	25	2.1	24	85	3	66	37	39	0	23	1.55
46847066--46847157	27	3.4	27	89	0	130	29	21	7	41	1.81
46847189--46847288	27	3.7	27	82	5	139	42	22	7	29	1.79
46847156--46847288	54	2.5	53	78	8	135	39	20	10	29	1.86
46847189--46847301	27	4.2	27	82	4	138	43	20	6	30	1.76
46847242--46847367	27	4.6	27	76	13	89	45	18	5	30	1.72
46847290--46847375	27	3.1	27	80	14	95	39	13	9	37	1.78
46847416--46847489	27	2.7	27	76	12	71	37	20	20	21	1.94
46847429--46847493	27	2.4	27	82	5	78	35	18	24	21	1.96
46848275--46848344	25	2.8	25	89	4	97	27	22	24	25	2.00
46848300--46848371	25	3.0	24	80	13	76	29	22	22	26	1.99
46848564--46848641	31	2.5	31	97	2	149	28	17	26	26	1.98
46855701--46855817	46	2.5	48	88	2	166	29	17	28	23	1.97
46860145--46860187	14	2.9	15	86	6	52	11	16	16	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46865110--46865222	29	3.9	29	83	1	129	31	33	9	24	1.88
46865438--46865468	16	1.9	16	93	0	53	9	22	19	48	1.78
46867096--46867195	49	2.0	49	90	0	155	25	24	21	30	1.99
46867264--46867334	35	2.0	35	91	2	115	66	7	5	21	1.37
46867271--46867368	12	8.6	11	70	13	65	66	5	8	20	1.37
46867352--46867376	13	1.9	13	100	0	50	68	0	8	24	1.16
46880696--46880730	18	1.9	18	100	0	70	22	22	37	17	1.94
46880797--46880876	29	2.8	28	85	7	99	23	16	32	27	1.96
46885076--46885170	29	3.3	28	81	8	111	28	27	15	28	1.96
46885393--46885428	16	2.2	16	90	0	54	8	22	16	52	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349