genome.fa.s1.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  102  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31894661--31894795	40	3.3	41	86	8	179	26	22	20	31	1.98
31900369--31900477	51	2.1	51	86	3	157	29	33	18	19	1.95
31907698--31907748	7	7.3	7	100	0	102	29	29	41	0	1.57
31912309--31912405	49	2.0	49	91	0	158	42	10	19	27	1.84
31915702--31915729	5	5.6	5	100	0	56	39	0	0	60	0.97
31917443--31917547	45	2.3	45	85	3	122	19	16	19	45	1.85
31917727--31917929	18	11.3	18	77	6	153	36	12	13	37	1.82
31917981--31918015	18	1.9	18	94	0	61	34	8	20	37	1.83
31917983--31918028	18	2.6	18	86	3	58	34	8	17	39	1.80
31919412--31919543	57	2.3	57	80	5	151	27	12	6	53	1.63
31922260--31922347	43	2.0	43	97	0	167	19	18	18	44	1.87
31924950--31925007	27	2.1	27	84	12	75	22	12	13	51	1.74
31925888--31925982	47	2.0	47	91	0	154	50	13	6	29	1.66
31927181--31927244	21	3.3	19	79	10	67	65	4	1	28	1.21
31927200--31927242	21	2.1	20	91	4	68	72	4	0	23	1.04
31932654--31932800	22	6.6	22	68	13	70	5	5	29	59	1.42
31932721--31932793	33	2.2	33	85	0	92	4	4	31	60	1.34
31932764--31932822	11	5.4	11	83	0	64	10	8	22	59	1.56
31932737--31932808	33	2.2	33	84	0	90	6	6	29	56	1.52
31932753--31932822	22	3.2	22	83	0	77	8	7	22	61	1.49
31933851--31933883	12	3.0	11	91	8	50	27	0	6	66	1.15
31941629--31941927	124	2.4	124	83	2	377	24	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31942625--31942669	16	2.8	16	82	3	54	42	0	0	57	0.98
31942829--31942854	3	8.7	3	100	0	52	34	0	0	65	0.93
31956522--31956573	3	17.3	3	100	0	104	67	0	0	32	0.91
31958821--31958858	19	1.9	19	89	5	58	71	0	10	18	1.14
31965416--31965483	25	2.7	25	84	13	95	20	25	23	30	1.98
31966687--31966846	44	3.7	42	85	5	205	29	15	25	30	1.95
31974501--31974588	43	2.0	43	88	0	131	17	20	34	28	1.95
31977144--31977224	40	2.0	40	82	0	99	28	3	12	55	1.54
31977217--31977376	34	4.7	34	75	12	112	21	10	9	58	1.59
31977278--31977378	34	3.0	33	84	8	123	18	10	9	60	1.57
31977217--31977378	68	2.4	68	80	5	157	20	10	9	58	1.60
31980936--31980978	23	1.9	22	86	13	61	44	6	11	37	1.68
31981803--31981836	6	5.7	6	89	0	50	41	17	5	35	1.74
31986061--31986203	53	2.7	52	82	5	180	41	18	24	14	1.88
31987318--31988117	178	4.5	178	95	0	1379	29	19	24	26	1.98
31987596--31987689	43	2.1	46	83	14	119	31	11	25	30	1.91
31987774--31988051	43	6.3	45	68	20	126	30	17	24	26	1.97
32001860--32002001	54	2.7	52	84	5	187	41	19	24	14	1.89
32003118--32003915	178	4.5	178	95	1	1352	29	19	24	26	1.98
32003396--32003495	43	2.3	45	83	13	120	31	14	25	30	1.94
32003118--32003915	354	2.2	356	94	0	1384	29	19	24	26	1.98
32003750--32003843	43	2.1	46	83	14	119	32	13	24	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32014504--32014900	199	2.0	198	87	0	578	34	17	14	34	1.90
32015191--32015610	211	2.0	211	96	0	777	25	20	13	40	1.89
32015818--32015907	27	3.3	27	84	0	126	17	23	14	44	1.86
32016022--32016082	27	2.3	27	97	0	113	32	29	13	24	1.93
32018464--32019151	134	5.2	133	81	5	701	32	16	12	38	1.86
32019134--32019165	16	2.0	16	100	0	64	31	12	18	37	1.88
32021819--32021929	42	2.6	42	81	2	134	29	15	24	30	1.95
32023510--32023550	21	1.9	22	90	5	66	56	12	9	21	1.65
32037436--32037806	130	2.9	130	83	4	428	29	16	18	35	1.93
32049510--32049801	44	6.6	44	92	1	469	29	15	30	23	1.96
32051606--32051655	25	2.0	25	100	0	100	40	16	0	44	1.47
32052652--32053018	130	2.8	131	81	5	379	30	16	17	35	1.92
32060658--32060683	8	3.2	8	100	0	52	53	23	0	23	1.46
32061419--32061503	10	8.7	9	71	14	62	58	2	3	35	1.28
32070150--32070189	20	1.9	22	85	10	57	60	0	2	37	1.11
32071498--32071528	10	3.1	10	95	0	53	16	0	45	38	1.47
32074663--32074688	13	2.0	13	100	0	52	15	15	15	53	1.73
32076515--32076551	18	2.0	19	85	15	51	32	16	2	48	1.60
32076865--32076897	2	17.0	2	93	6	59	51	0	0	48	1.00
32079928--32080088	84	1.9	84	96	0	295	40	7	32	19	1.79
32083753--32083814	31	2.0	31	100	0	124	58	6	3	32	1.40
32087738--32087849	35	3.2	35	87	6	174	61	2	27	8	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32087740--32087846	33	3.2	33	90	2	151	61	2	27	8	1.39
32091912--32092084	46	3.8	46	96	0	310	29	29	20	20	1.98
32094504--32094544	15	2.7	15	84	0	55	58	7	19	14	1.59
32097249--32097418	46	3.7	46	94	0	286	31	28	20	20	1.97
32099468--32099566	50	1.9	53	89	6	159	29	32	22	16	1.95
32102137--32102163	14	1.9	14	100	0	54	81	0	0	18	0.69
32102240--32102293	28	1.9	28	92	0	90	51	3	20	24	1.63
32104883--32104912	14	2.1	15	93	6	53	30	13	0	56	1.37
32106579--32106618	5	7.8	5	89	10	55	82	0	0	17	0.67
32106579--32106617	21	1.9	20	94	5	69	82	0	0	17	0.68
32107669--32107725	21	2.8	21	70	22	50	43	5	1	49	1.35
32107927--32107966	16	2.5	16	83	0	53	37	5	0	57	1.21
32109894--32109943	24	2.0	25	96	3	93	46	8	24	22	1.78
32111970--32112008	18	2.1	19	86	13	55	51	0	2	46	1.14
32115116--32115167	15	3.2	15	73	19	50	46	0	0	53	1.00
32115129--32115165	19	1.9	19	88	0	56	51	0	0	48	1.00
32115182--32115222	13	2.9	14	77	22	50	41	0	0	58	0.98
32115182--32115218	15	2.3	17	86	13	60	37	0	0	62	0.96
32115204--32115239	18	1.9	18	88	5	54	58	0	0	41	0.98
32115250--32115280	16	1.9	16	93	0	53	48	0	0	51	1.00
32115832--32115918	12	6.9	13	76	17	53	52	1	2	43	1.21
32115835--32115918	26	3.4	25	79	11	91	52	1	2	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32115844--32115986	63	2.3	63	83	7	173	54	2	1	41	1.21
32117494--32117612	63	1.9	63	87	0	175	24	30	21	24	1.99
32119521--32119559	19	2.1	19	100	0	78	35	0	23	41	1.55
32125149--32125635	47	10.1	47	86	6	641	31	12	29	26	1.92
32125223--32125298	24	3.2	24	62	23	61	28	13	32	25	1.93
32125149--32125635	98	5.0	98	90	3	756	31	12	29	26	1.92
32125609--32125699	46	2.0	46	84	0	119	32	9	31	25	1.89
32125152--32125644	147	3.4	140	83	7	466	31	12	29	26	1.93
32125846--32125954	37	2.9	37	94	0	182	23	19	30	26	1.98
32135041--32135124	40	2.3	36	84	15	118	50	17	15	16	1.79
32135052--32135129	40	2.0	40	100	0	156	47	19	15	17	1.83
32149212--32149318	28	3.8	28	92	0	160	29	25	10	34	1.89
32154275--32154481	28	7.5	28	73	8	181	28	34	19	16	1.94
32154245--32154483	56	4.2	57	90	5	380	28	35	17	17	1.93
32156458--32156564	28	3.8	28	92	0	160	29	25	10	34	1.89
32162969--32163147	27	6.6	27	82	5	180	29	28	15	26	1.96
32162969--32163147	55	3.3	53	82	6	198	29	28	15	26	1.96
32171231--32171408	27	6.6	27	84	3	205	29	28	15	26	1.96
32171252--32171407	82	1.9	81	88	3	233	29	28	15	26	1.96
32174892--32174924	16	2.1	16	88	11	50	30	6	15	48	1.69
32178859--32178914	28	2.0	29	89	10	89	37	0	41	21	1.53
32179861--32179909	24	2.0	24	96	0	89	26	8	20	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32187652--32187692	21	1.9	22	90	5	66	31	2	9	56	1.45
32193086--32193112	13	2.1	13	100	0	54	22	25	7	44	1.79
32195287--32196025	369	2.0	369	100	0	1478	33	19	13	33	1.91
32198763--32198902	74	1.9	74	95	0	253	25	25	16	32	1.96
32201392--32201487	14	6.9	14	72	18	51	70	1	17	10	1.20
32206071--32206163	45	2.1	45	95	0	168	21	24	21	32	1.98
32208367--32208409	16	2.7	16	81	0	50	41	16	20	20	1.90
32208367--32208392	8	3.2	8	100	0	52	42	11	23	23	1.86
32208621--32208679	29	2.1	28	93	3	100	28	13	27	30	1.94
32212821--32212851	16	1.9	16	93	0	53	35	22	0	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349