genome.fa.s1.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  214  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69855322--69855496	45	3.8	46	79	13	216	29	29	20	20	1.98
69855329--69855499	93	1.8	92	96	1	315	28	29	21	21	1.98
69862865--69863036	93	1.8	93	96	0	317	27	29	21	20	1.98
69862858--69863033	46	3.8	46	79	12	216	28	29	21	20	1.98
69865140--69865205	31	2.2	30	91	5	114	36	10	27	25	1.89
69865644--69865792	43	3.5	43	75	11	112	23	19	26	30	1.98
69869251--69869278	7	4.0	7	100	0	56	42	42	0	14	1.45
69878740--69878800	20	3.0	20	68	0	59	21	21	19	37	1.94
69879136--69879177	20	2.0	21	90	4	68	33	7	9	50	1.62
69881332--69881457	43	3.0	42	77	6	137	33	15	23	26	1.95
69888047--69888073	12	2.2	12	100	0	54	14	22	33	29	1.94
69891315--69891569	55	4.8	53	80	8	245	35	17	25	21	1.95
69891325--69891522	108	1.8	110	87	4	303	34	17	25	22	1.96
69891761--69891791	16	1.9	16	93	0	53	41	0	22	35	1.54
69898902--69899105	53	3.8	53	78	7	205	34	17	24	23	1.96
69899344--69899374	16	1.9	16	93	0	53	41	0	22	35	1.54
69907739--69908083	40	8.6	40	91	1	557	27	20	27	24	1.99
69913700--69913731	16	2.0	16	100	0	64	50	6	12	31	1.65
69915336--69915680	40	8.6	40	91	1	548	27	21	27	23	1.99
69920558--69920734	45	4.0	45	86	6	238	24	24	29	22	1.99
69922082--69922129	16	2.9	16	76	11	53	16	6	2	75	1.11
69924370--69924419	24	2.0	24	81	11	57	48	6	24	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69926759--69927030	134	2.0	134	99	0	535	37	13	15	33	1.87
69927112--69927259	74	2.0	74	100	0	296	32	24	9	33	1.87
69937104--69937687	291	2.0	291	100	0	1168	40	16	14	28	1.88
69940385--69940457	36	2.0	36	100	0	146	32	24	16	26	1.96
69941392--69941454	31	2.1	31	87	3	92	25	3	11	60	1.45
69942858--69942903	20	2.2	20	84	7	56	47	0	2	50	1.13
69943261--69943298	20	2.0	20	90	10	62	55	10	0	34	1.34
69943262--69943309	20	2.3	21	75	10	55	60	8	0	31	1.26
69947575--69947609	17	2.1	16	89	5	52	0	11	0	88	0.51
69947581--69947616	13	2.8	13	91	8	56	0	11	0	88	0.50
69947581--69947608	12	2.3	12	100	0	56	0	7	0	92	0.37
69949832--69950020	89	2.1	89	88	4	276	37	21	10	30	1.87
69953247--69953294	18	2.8	17	75	12	53	54	2	0	43	1.12
69953228--69953294	34	1.9	36	84	6	93	53	4	1	40	1.30
69958071--69958103	13	2.5	13	95	0	57	30	3	15	51	1.58
69962100--69963012	48	19.0	48	90	0	1423	36	6	25	31	1.82
69963153--69963254	37	2.8	37	95	0	177	23	19	30	26	1.98
69967630--69967697	35	1.9	35	87	0	100	30	25	11	32	1.91
69967813--69967843	9	3.4	9	95	0	53	74	0	9	16	1.07
69974337--69974382	20	2.3	21	82	14	62	26	17	28	28	1.98
69978178--69978231	27	2.0	27	100	0	108	29	18	11	40	1.85
69984548--69985092	40	13.6	40	94	0	930	28	19	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69990580--69991084	40	12.6	40	94	1	843	28	19	27	24	1.99
69995447--69995496	20	2.5	20	80	6	57	18	18	20	44	1.88
69995526--69995563	20	1.9	20	94	0	67	10	26	23	39	1.87
69995480--69995601	60	2.0	60	82	6	149	13	28	21	36	1.91
69995530--69995601	20	3.6	20	73	3	65	9	29	23	37	1.87
69998282--69998333	27	2.0	26	84	3	68	17	26	21	34	1.95
70000913--70001090	27	6.6	27	83	3	205	26	15	28	29	1.96
70000914--70001069	82	1.9	81	88	3	233	26	15	28	29	1.96
70000910--70001090	82	2.2	81	83	2	229	27	15	27	29	1.96
70007257--70007418	79	2.1	79	100	0	324	29	9	27	33	1.89
70009022--70009524	47	10.6	47	92	2	799	29	29	8	33	1.86
70009022--70009524	143	3.5	142	93	1	803	29	29	8	33	1.86
70009022--70009524	190	2.6	190	94	0	889	29	29	8	33	1.86
70009383--70009458	22	3.3	22	66	16	64	26	30	10	32	1.90
70013240--70013285	19	2.4	19	96	0	83	34	23	32	8	1.86
70018351--70018472	6	20.3	6	100	0	244	32	0	17	50	1.46
70025277--70025364	6	14.3	6	72	17	65	47	12	19	20	1.81
70025298--70025364	25	2.7	25	88	0	98	46	13	19	20	1.83
70025482--70025589	27	4.0	27	83	5	112	37	21	22	19	1.95
70025482--70025589	54	2.0	53	83	1	135	37	21	22	19	1.95
70025748--70025811	22	2.9	22	77	9	67	35	23	20	20	1.96
70026228--70026335	27	4.0	27	85	4	137	23	24	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70026232--70026335	54	1.9	53	88	1	154	23	25	18	33	1.96
70026327--70026715	27	14.6	27	79	7	368	30	10	21	37	1.87
70026327--70026715	53	7.3	54	78	9	352	30	10	21	37	1.87
70026375--70026715	80	4.3	79	81	9	374	30	11	21	37	1.88
70026392--70026652	105	2.5	104	82	8	321	31	11	19	37	1.87
70026762--70026813	27	1.9	27	96	0	95	21	40	21	17	1.91
70029989--70030029	19	2.2	18	86	4	55	34	17	0	48	1.47
70035427--70035624	50	3.9	50	78	2	189	31	25	16	27	1.96
70035492--70035621	52	2.6	50	85	2	161	33	26	13	26	1.94
70039029--70039103	37	2.0	37	92	0	123	24	16	12	48	1.79
70047406--70047588	79	2.3	81	83	7	223	24	22	27	24	2.00
70047407--70047590	40	4.6	40	82	9	207	24	22	28	24	2.00
70047459--70047623	79	2.1	79	83	6	201	26	21	27	24	1.99
70055578--70055760	79	2.3	81	83	7	223	24	22	27	24	2.00
70055579--70055762	40	4.6	40	82	9	207	24	22	28	24	2.00
70055631--70055795	79	2.1	79	83	6	201	26	21	27	24	1.99
70065739--70065919	77	2.3	80	82	9	212	24	23	27	24	2.00
70065739--70065921	40	4.7	40	82	9	216	24	22	27	25	2.00
70065791--70065954	79	2.1	77	81	8	190	25	21	27	25	1.99
70073883--70074065	79	2.3	81	83	7	223	24	22	27	24	2.00
70073884--70074067	40	4.6	40	82	9	207	24	22	28	24	2.00
70073936--70074100	79	2.1	79	83	6	201	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70088271--70088323	27	2.0	27	88	0	79	35	15	13	35	1.86
70104237--70104292	28	2.0	28	96	0	103	19	25	12	42	1.86
70105324--70105348	13	1.9	13	100	0	50	32	8	16	44	1.76
70106465--70106747	138	2.1	138	91	0	460	44	7	8	40	1.61
70106729--70106872	75	1.9	75	95	0	261	32	13	9	45	1.74
70109348--70109423	27	2.8	27	87	0	107	14	21	23	40	1.90
70113558--70113680	49	2.5	50	80	5	151	29	28	14	27	1.95
70118417--70118583	54	3.1	54	81	2	210	36	20	22	20	1.95
70118425--70118583	27	5.9	27	74	10	137	36	19	22	21	1.95
70129718--70129872	43	3.7	42	78	12	165	27	14	24	34	1.94
70131422--70131558	40	3.5	40	81	6	163	26	27	22	24	2.00
70144819--70144926	52	2.1	52	96	0	198	26	7	17	48	1.74
70146618--70146642	12	2.1	12	100	0	50	32	0	16	52	1.44
70146898--70146967	28	2.5	27	88	9	97	31	28	12	27	1.93
70158466--70158838	48	7.7	48	77	4	356	24	28	18	28	1.98
70158471--70158848	96	3.9	96	86	2	499	25	28	18	28	1.98
70166185--70166556	48	7.7	48	75	6	322	25	27	16	29	1.97
70166190--70166568	96	3.9	96	84	2	474	26	27	16	29	1.97
70166666--70166708	19	2.2	19	83	8	50	48	11	4	34	1.60
70170237--70170288	15	3.2	15	73	19	50	46	0	1	51	1.12
70170321--70170360	19	2.1	19	90	9	64	40	0	0	60	0.97
70186035--70186074	18	2.2	18	86	0	53	27	7	10	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70193236--70193270	3	11.7	3	87	0	52	31	2	2	62	1.24
70205784--70205952	82	2.0	83	94	1	295	35	27	2	34	1.70
70212052--70212101	16	3.1	16	83	11	66	40	6	14	40	1.70
70217599--70217662	31	2.1	31	93	0	110	6	29	10	53	1.60
70223336--70223376	21	1.9	22	85	14	59	31	7	34	26	1.84
70238872--70238914	15	2.8	16	82	7	52	34	20	11	32	1.89
70240872--70241002	47	2.8	46	89	3	181	22	18	26	32	1.97
70240869--70241021	47	3.2	46	79	13	145	22	16	26	33	1.96
70245318--70245346	14	2.0	15	93	6	51	27	0	20	51	1.47
70252736--70252956	93	2.4	91	79	9	212	24	31	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349