genome.fa.s1.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  128  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40834060--40834164	17	5.9	17	75	18	81	36	5	1	56	1.34
40834176--40834208	13	2.4	14	90	5	50	42	3	0	54	1.15
40834245--40834277	12	2.6	13	90	4	50	27	3	6	63	1.32
40842963--40843000	19	2.0	19	94	0	67	34	10	23	31	1.89
40843269--40843298	12	2.5	12	94	0	51	50	6	0	43	1.28
40843892--40843931	19	2.0	20	86	13	57	77	2	5	15	1.04
40844477--40845006	44	12.3	44	86	5	735	22	30	17	29	1.97
40845195--40845314	61	1.9	65	89	6	194	38	11	15	34	1.84
40857150--40857187	19	2.0	19	94	0	67	34	10	23	31	1.89
40858034--40858084	5	10.2	5	76	16	52	78	1	3	15	0.99
40858328--40858367	18	2.4	16	91	8	62	5	10	0	85	0.75
40860251--40860345	45	2.1	46	88	2	138	46	20	12	21	1.83
40868368--40868476	26	4.2	26	90	1	148	34	5	23	35	1.78
40870083--40870194	27	4.2	27	82	5	120	16	23	23	36	1.94
40870085--40870190	53	2.0	53	87	3	151	17	22	22	36	1.95
40875267--40875318	25	2.1	25	100	0	104	26	15	15	42	1.87
40875783--40875834	25	2.1	25	100	0	104	26	15	15	42	1.87
40874919--40875949	516	2.0	518	95	0	1852	32	13	9	44	1.77
40880833--40880867	18	1.9	18	88	0	52	8	42	2	45	1.49
40886474--40886545	28	2.5	29	86	2	101	29	29	15	26	1.96
40894257--40894357	29	3.5	28	86	4	130	31	27	13	26	1.94
40896713--40897860	583	2.0	584	91	0	1850	31	19	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40901618--40901642	13	1.9	13	100	0	50	4	56	0	40	1.18
40909664--40909715	23	2.3	22	75	21	54	9	23	1	65	1.32
40909673--40909727	12	4.6	12	73	15	51	12	23	0	63	1.29
40909709--40909746	17	2.2	18	85	4	51	10	23	2	63	1.39
40912920--40913170	33	7.7	33	78	7	158	32	21	10	35	1.87
40912926--40913170	98	2.5	99	78	7	275	32	20	10	35	1.87
40928936--40929052	33	3.5	33	79	3	119	27	24	13	34	1.93
40928938--40929041	34	3.1	34	77	1	102	25	23	14	36	1.93
40929036--40929195	32	4.9	33	82	3	173	33	20	10	36	1.87
40929036--40929195	65	2.5	65	80	6	198	33	20	10	36	1.87
40929065--40929195	32	4.0	32	86	4	174	33	19	10	36	1.86
40928969--40929214	33	7.5	33	79	5	176	32	20	11	36	1.88
40929414--40929498	37	2.3	37	89	2	125	40	18	8	32	1.81
40948259--40948338	39	2.1	39	97	0	151	36	22	11	30	1.89
40951476--40951509	18	1.9	18	94	5	61	64	0	11	23	1.26
40960003--40960031	3	9.7	3	100	0	58	68	0	0	31	0.89
40966865--40966931	24	2.8	24	83	2	89	16	22	19	41	1.90
40972891--40972918	12	2.3	12	100	0	56	32	10	35	21	1.88
40973671--40973737	34	1.9	35	91	8	111	31	23	22	22	1.98
40993748--40994308	131	4.3	131	81	5	527	40	11	9	38	1.74
40993775--40994308	130	4.1	130	80	7	448	40	11	10	38	1.75
40993787--40994301	255	2.0	260	81	6	611	40	11	9	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40995781--40995866	45	1.9	45	88	4	129	54	19	22	3	1.59
40995787--40995866	25	3.4	24	67	19	62	56	18	21	3	1.57
40997060--40997525	131	3.6	131	82	6	541	42	10	9	37	1.73
40997888--40997937	21	2.4	21	75	0	55	36	14	14	36	1.86
40999359--40999414	27	2.1	27	96	0	103	28	14	23	33	1.94
41011353--41011535	40	4.6	39	92	4	278	25	27	25	21	1.99
41013529--41013572	22	2.0	22	86	8	63	43	0	4	52	1.22
41027334--41027504	93	1.8	93	93	0	297	27	28	22	21	1.99
41027326--41027501	46	3.8	46	80	10	214	28	28	21	21	1.99
41029882--41029931	15	3.4	15	86	2	66	60	12	18	10	1.59
41029893--41029940	15	3.2	15	79	5	53	56	14	16	12	1.68
41032831--41033003	95	1.8	95	88	4	271	28	26	22	23	1.99
41039506--41039550	18	2.6	16	77	16	54	11	20	46	22	1.81
41042504--41042543	21	1.9	21	84	0	53	47	2	15	35	1.58
41046580--41046645	32	2.1	32	94	0	114	48	15	19	16	1.81
41047999--41048063	34	1.9	34	100	0	130	36	21	24	16	1.94
41048933--41048969	5	7.4	5	93	0	65	78	0	2	18	0.87
41050082--41050146	22	3.0	21	86	4	94	18	21	27	32	1.97
41050112--41050194	38	2.2	38	86	4	114	22	22	26	27	1.99
41050082--41050184	22	5.0	22	74	13	92	21	21	26	31	1.98
41053291--41053316	10	2.6	10	100	0	52	23	0	26	50	1.50
41066892--41067140	125	2.0	124	96	0	462	30	8	21	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41067472--41067533	29	2.1	30	79	8	74	35	8	16	40	1.78
41069505--41069677	94	1.8	94	86	0	247	30	19	27	22	1.98
41069555--41069871	47	6.7	47	72	12	188	29	19	26	24	1.99
41069555--41069768	94	2.3	92	81	5	227	29	18	25	25	1.98
41069739--41069877	49	2.8	49	83	10	169	28	20	27	23	1.99
41070619--41070749	55	2.4	55	84	5	158	22	21	29	26	1.99
41074898--41074950	21	2.5	20	79	8	61	26	7	33	32	1.84
41076967--41077114	32	4.6	32	89	0	233	45	9	12	32	1.75
41076964--41077114	64	2.3	64	93	1	257	45	9	13	31	1.76
41078205--41078230	13	2.0	13	100	0	52	38	38	0	23	1.55
41085762--41085870	55	2.0	55	85	7	150	22	27	27	22	1.99
41089664--41089701	11	3.4	11	88	3	58	34	7	0	57	1.28
41092369--41092489	47	2.6	45	79	6	127	32	10	30	26	1.90
41092564--41092648	40	2.2	40	84	2	109	17	20	31	30	1.95
41109604--41109638	13	2.7	13	95	0	61	5	17	48	28	1.69
41111117--41111163	23	2.0	23	87	0	67	27	14	14	42	1.86
41118679--41118762	28	3.0	28	87	1	114	46	28	3	21	1.68
41118665--41118735	28	2.9	23	77	18	79	45	33	4	16	1.67
41118803--41118832	13	2.2	14	94	5	53	36	36	3	23	1.71
41118808--41118846	13	3.0	13	88	0	51	33	41	0	25	1.56
41118919--41118957	17	2.3	17	90	0	60	30	23	0	46	1.53
41118916--41118964	23	2.1	24	88	3	73	34	20	0	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41118945--41118990	16	2.8	17	77	12	51	39	23	0	36	1.55
41120564--41120824	40	6.6	40	82	5	271	23	26	23	26	2.00
41120564--41120824	80	3.3	80	83	3	303	23	26	23	26	2.00
41127767--41127814	25	1.9	25	100	0	96	27	25	20	27	1.99
41127851--41127897	20	2.3	20	96	0	85	34	10	21	34	1.88
41127947--41128041	23	4.1	23	91	5	156	28	18	21	31	1.97
41132202--41132234	16	2.1	16	94	0	57	45	3	9	42	1.51
41132598--41132637	17	2.4	17	87	8	55	50	0	10	40	1.36
41132703--41132728	13	2.0	13	100	0	52	61	0	0	38	0.96
41150984--41151193	45	4.7	45	70	8	144	29	20	23	26	1.99
41150990--41151806	132	6.2	130	89	2	1080	28	18	24	28	1.98
41151390--41151581	45	4.3	44	67	10	131	26	18	28	26	1.98
41154368--41154625	131	2.0	131	84	1	338	27	20	19	31	1.97
41158848--41158974	45	2.9	45	83	8	138	23	27	24	24	2.00
41159291--41159479	43	4.4	43	87	2	249	30	33	22	13	1.93
41159298--41159458	86	1.9	86	94	0	286	31	32	22	13	1.92
41163821--41164085	53	5.0	53	82	0	296	35	12	24	27	1.92
41164201--41164366	61	2.7	60	79	1	170	30	13	27	28	1.94
41167656--41167710	16	3.4	16	92	5	85	38	7	23	30	1.82
41167692--41167785	44	2.1	46	86	4	129	31	7	25	35	1.84
41167881--41167921	14	3.1	14	79	10	50	58	0	0	41	0.98
41167877--41168035	58	2.8	57	81	4	189	55	3	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41171781--41171831	26	2.0	26	84	0	66	31	25	11	31	1.92
41171836--41171928	23	4.0	23	74	10	75	41	20	17	20	1.90
41171834--41171926	46	2.0	46	81	4	107	41	19	17	21	1.90
41175248--41175320	35	2.1	35	97	0	137	42	15	10	31	1.81
41178231--41178268	18	2.1	19	85	5	51	50	0	2	47	1.15
41178391--41178456	22	3.0	22	100	0	132	27	18	18	36	1.94
41178371--41178456	44	2.0	44	88	4	129	27	18	19	33	1.96
41184815--41184849	14	2.5	14	95	0	61	22	34	34	8	1.85
41187064--41187248	40	4.7	40	80	7	200	23	21	28	26	1.99
41187065--41187283	79	2.8	78	77	12	223	25	21	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349