genome.fa.s1.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  163  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52693516--52693635	43	2.9	41	76	13	118	24	20	27	28	1.99
52702612--52702641	14	2.1	14	100	0	60	43	0	13	43	1.43
52705534--52705658	49	2.5	49	85	1	160	22	28	20	28	1.99
52705534--52705711	97	1.8	99	83	7	238	23	27	20	28	1.99
52705580--52705848	143	1.9	140	78	8	294	24	27	18	28	1.98
52708994--52709216	79	2.8	79	83	9	260	24	27	22	25	2.00
52708994--52709216	39	5.7	40	85	8	257	24	27	22	25	2.00
52715360--52715429	28	2.5	28	92	0	113	20	47	15	17	1.83
52716394--52716518	49	2.5	49	80	3	135	24	28	19	28	1.98
52716394--52716573	97	1.8	98	82	4	229	23	27	18	30	1.98
52721416--52721549	42	3.1	42	80	9	146	34	26	16	22	1.95
52721385--52721549	86	1.9	85	81	8	201	31	26	18	23	1.97
52721918--52721949	8	4.0	8	95	0	55	34	12	0	53	1.39
52731194--52731809	81	7.6	81	81	5	629	31	9	19	38	1.85
52731194--52731809	27	22.9	27	83	2	553	31	9	19	38	1.85
52732330--52732371	22	1.9	22	100	0	84	28	35	16	19	1.93
52745541--52745593	8	6.6	8	84	0	70	49	18	24	7	1.74
52745548--52745599	16	3.2	16	88	0	77	50	17	25	7	1.72
52745823--52745897	29	2.7	29	87	4	100	25	16	30	28	1.96
52745823--52745906	29	3.0	28	82	6	98	27	14	29	28	1.95
52752046--52752079	8	4.2	8	84	0	50	52	32	2	11	1.53
52753340--52753438	29	3.5	28	78	6	92	32	13	26	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52757286--52757327	19	2.2	19	100	0	84	35	28	14	21	1.92
52759832--52759869	15	2.5	15	87	8	51	60	5	2	31	1.33
52761091--52761160	25	2.8	25	91	4	106	25	22	24	27	2.00
52761392--52761527	27	5.0	27	91	0	200	27	21	17	33	1.96
52761512--52761638	27	4.8	27	82	4	134	27	10	21	40	1.85
52761512--52761664	54	2.9	54	80	5	134	30	10	20	39	1.86
52761543--52761665	27	4.6	27	80	2	113	30	9	19	40	1.84
52766324--52766392	23	2.9	24	74	8	70	21	23	20	34	1.96
52766568--52766644	19	4.0	19	71	8	57	37	6	15	40	1.73
52770165--52770198	14	2.4	14	90	0	50	23	5	14	55	1.61
52772424--52772454	14	2.2	14	94	0	53	9	25	32	32	1.88
52790288--52790509	80	2.8	78	85	6	284	25	22	26	25	2.00
52790292--52790476	40	4.6	40	93	1	300	22	22	28	26	1.99
52793328--52793387	31	1.9	31	83	6	77	61	1	0	36	1.06
52793328--52793427	38	2.9	33	77	18	82	62	3	2	33	1.22
52796184--52796232	19	2.6	19	86	0	62	22	18	14	44	1.85
52796973--52797021	19	2.5	19	86	3	62	71	2	24	2	1.07
52796973--52797027	6	8.7	7	75	18	50	70	1	25	1	1.06
52796970--52797027	12	4.7	12	79	14	64	72	1	24	1	1.03
52796983--52797051	6	11.5	6	83	13	54	62	1	33	2	1.19
52799197--52799322	60	2.1	60	83	7	157	36	15	7	39	1.77
52801803--52802023	40	5.6	40	74	5	182	24	25	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52804288--52804364	40	1.9	40	91	0	127	14	14	35	36	1.86
52804645--52804698	18	3.3	18	66	28	57	24	50	7	18	1.72
52804635--52804731	30	3.2	30	95	0	167	25	49	7	17	1.72
52804891--52804926	16	2.2	16	90	0	54	27	5	27	38	1.79
52805214--52805343	25	5.5	23	73	10	86	34	6	3	55	1.43
52805495--52805550	25	2.3	24	79	14	62	37	16	3	42	1.65
52807059--52807299	125	1.9	125	87	3	351	38	9	12	39	1.75
52807370--52807395	13	2.0	13	100	0	52	76	7	0	15	0.99
52816501--52816568	34	2.0	34	100	0	136	23	26	14	35	1.94
52821733--52821963	50	4.7	49	80	4	284	29	26	17	25	1.98
52821733--52821963	99	2.3	99	85	3	304	29	26	17	25	1.98
52822210--52822263	27	2.0	27	85	0	72	38	14	7	38	1.75
52826656--52826917	47	5.5	48	74	16	176	28	17	29	24	1.97
52826653--52826824	94	1.8	94	86	5	249	30	17	28	23	1.97
52826795--52826917	49	2.6	46	87	5	156	25	17	31	25	1.97
52827944--52828037	40	2.4	40	82	3	111	37	37	10	14	1.81
52831109--52831173	33	2.0	33	100	0	130	52	3	15	29	1.58
52831623--52831766	71	2.0	70	92	4	236	50	2	3	44	1.30
52841574--52841599	13	2.0	13	100	0	52	15	23	30	30	1.95
52842250--52842274	13	1.9	13	100	0	50	80	0	8	12	0.92
52848967--52849009	6	6.7	6	80	15	50	11	2	2	83	0.83
52848967--52848995	15	1.9	15	100	0	58	13	0	3	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52853361--52853470	55	2.0	55	96	0	202	26	17	19	37	1.93
52854879--52854917	19	2.1	19	95	0	69	35	7	0	56	1.28
52858071--52858151	26	3.1	26	98	0	153	33	7	24	34	1.83
52859739--52859877	27	5.2	26	80	14	151	20	24	21	33	1.97
52859735--52859877	52	2.7	53	89	6	209	19	24	21	34	1.97
52866053--52866132	26	3.1	26	98	0	151	32	7	25	35	1.84
52867726--52867812	27	3.2	27	82	9	115	17	21	24	36	1.94
52872488--52872665	27	6.6	27	83	3	205	26	15	28	29	1.96
52872489--52872644	82	1.9	81	88	3	233	26	15	28	29	1.96
52872485--52872665	82	2.2	81	83	2	229	27	15	27	29	1.96
52881878--52881921	22	2.0	21	82	8	52	68	11	13	6	1.39
52881911--52881939	6	4.8	6	100	0	58	86	0	0	13	0.58
52882515--52882550	18	1.9	19	88	5	56	83	2	8	5	0.89
52882514--52882558	19	2.4	19	81	7	56	82	2	6	8	0.93
52883852--52884790	178	5.3	178	84	4	1088	30	17	25	26	1.97
52883850--52884673	44	18.5	43	69	10	334	30	18	25	26	1.98
52883853--52884747	356	2.5	356	87	2	1219	29	17	25	26	1.98
52883886--52884883	534	1.9	534	80	5	1201	30	16	25	27	1.97
52890269--52890314	19	2.4	19	96	0	83	43	10	17	28	1.82
52892701--52892736	16	2.2	17	90	9	58	36	0	2	61	1.11
52892701--52892742	13	2.9	14	82	13	50	42	0	2	54	1.13
52892751--52892828	38	2.0	38	81	16	90	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52893413--52893452	14	2.8	14	88	3	53	52	0	15	32	1.43
52900741--52900816	38	2.0	38	100	0	152	31	13	23	31	1.93
52902003--52902147	40	3.6	40	85	4	193	25	24	26	23	2.00
52908799--52908874	38	2.0	38	100	0	152	31	13	23	31	1.93
52910645--52911028	40	9.6	40	92	1	619	23	28	20	27	1.99
52914097--52914239	40	3.6	40	84	6	175	25	24	26	23	2.00
52916361--52916444	26	3.2	26	94	0	150	34	4	23	36	1.76
52917928--52917980	26	2.0	26	85	7	72	37	22	15	24	1.92
52919997--52920107	47	2.4	47	83	6	145	35	22	16	26	1.95
52926229--52926267	4	10.2	4	89	10	64	0	25	0	74	0.82
52927159--52927264	43	2.5	42	84	4	133	25	16	26	31	1.97
52944800--52944974	46	3.8	45	78	7	181	28	29	20	21	1.98
52944808--52944978	93	1.8	93	91	0	279	28	29	21	21	1.98
52944805--52944994	46	4.1	46	71	20	137	28	28	20	22	1.98
52948130--52948313	27	6.8	27	82	5	203	28	8	21	42	1.81
52948312--52948403	27	3.4	27	86	5	132	39	7	25	28	1.83
52948292--52948428	54	2.5	53	77	10	143	34	8	24	32	1.86
52954250--52954565	40	7.9	40	94	1	528	22	22	28	26	1.99
52954573--52954646	29	2.6	29	85	6	89	22	16	29	31	1.96
52960083--52960165	31	2.7	31	96	3	152	27	26	16	28	1.97
52960386--52960454	25	2.8	26	86	6	90	24	23	27	24	2.00
52961263--52961327	27	2.4	27	79	5	69	23	24	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52961381--52961488	27	3.9	27	75	13	94	32	7	17	42	1.77
52961444--52961623	54	3.3	54	80	4	159	28	9	20	41	1.84
52961444--52961594	27	5.6	27	82	6	157	29	7	21	41	1.80
52961444--52961594	81	1.9	80	83	8	198	29	7	21	41	1.80
52961444--52961622	81	2.2	81	79	7	195	29	8	20	41	1.83
52961626--52961717	27	3.4	27	80	5	105	41	7	21	29	1.81
52963251--52963376	55	2.2	56	88	2	182	26	12	28	32	1.93
52963251--52963376	28	4.5	28	90	2	182	26	12	28	32	1.93
52963279--52963389	28	4.0	27	90	3	116	28	11	26	33	1.91
52970829--52970954	55	2.2	57	87	5	177	26	12	27	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349