Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  323  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107627452--107627507
26
2.1
26
90
3
85
62
12
14
10
1.55
107632161--107632240
21
3.8
21
81
5
90
46
12
28
12
1.78
107635173--107635218
24
1.9
24
86
0
65
56
21
10
10
1.64
107645439--107645502
32
2.0
32
100
0
128
43
12
6
37
1.68
107648864--107648892
3
9.7
3
100
0
58
68
31
0
0
0.89
107648895--107648931
5
7.4
5
100
0
74
59
0
0
40
0.97
107649330--107649414
5
17.0
5
82
4
109
55
2
1
41
1.20
107652207--107652246
10
4.2
10
87
12
66
50
0
0
50
1.00
107652207--107652246
18
2.1
18
90
9
62
50
0
0
50
1.00
107652283--107652332
16
3.2
16
78
18
61
54
0
0
46
1.00
107652313--107652350
18
2.1
19
85
14
53
44
0
0
55
0.99
107652286--107652390
29
3.6
31
70
23
77
51
0
0
47
1.07
107652346--107652379
15
2.1
16
89
10
52
58
0
0
41
0.98
107652412--107652468
15
3.5
15
73
17
60
50
1
0
47
1.11
107657934--107658023
14
5.6
14
68
27
54
64
5
3
26
1.31
107657927--107658026
20
5.6
20
68
26
89
64
7
3
26
1.34
107657928--107658033
34
3.1
34
100
0
212
66
5
2
25
1.28
107657948--107658037
14
5.6
14
68
27
54
66
4
2
26
1.22
107662813--107662842
11
2.7
11
94
0
51
0
13
0
86
0.57
107662860--107662893
9
3.8
9
85
14
52
17
0
2
79
0.86
107662967--107663029
13
5.1
13
70
29
57
39
0
0
60
0.97
107662971--107663014
23
2.0
23
91
8
74
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107662948--107663048
35
3.0
34
94
4
177
40
0
0
59
0.97
107663014--107663067
22
2.4
22
90
3
81
42
0
0
57
0.98
107662960--107663049
12
7.7
12
71
23
59
41
0
0
58
0.98
107662942--107663067
57
2.2
55
86
9
166
42
0
0
57
0.99
107663335--107663470
36
3.9
33
83
8
148
55
2
0
40
1.20
107663403--107663450
22
2.2
21
85
10
62
58
2
0
39
1.10
107663403--107663450
21
2.2
22
82
10
55
58
2
0
39
1.10
107663427--107663462
13
2.8
14
88
12
51
58
0
0
41
0.98
107663440--107663483
22
2.1
21
84
16
56
59
0
0
40
0.98
107663512--107663554
13
3.2
13
86
3
50
74
4
2
18
1.10
107663526--107663558
9
3.7
9
84
15
50
78
3
0
18
0.87
107664648--107664707
22
2.7
22
76
2
57
73
5
5
16
1.19
107673242--107673302
31
2.0
31
87
6
88
44
8
8
39
1.64
107676543--107676599
28
2.0
28
89
0
87
52
26
5
15
1.64
107679202--107679234
2
16.0
2
93
6
57
48
3
0
48
1.17
107679199--107679234
17
2.1
17
100
0
72
47
5
0
47
1.25
107679204--107679232
15
1.9
15
100
0
58
48
3
0
48
1.18
107682959--107682999
21
2.0
21
81
18
50
21
26
19
31
1.97
107690616--107690945
131
2.6
129
88
2
484
28
17
20
34
1.95
107692799--107692878
41
1.9
41
85
7
108
20
31
27
21
1.98
107694581--107694638
30
1.9
30
86
6
82
13
8
1
75
1.10
107694605--107694636
9
3.6
9
95
0
55
15
6
0
78
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107694587--107694632
22
2.1
21
81
18
51
13
8
0
78
0.97
107694634--107694672
20
2.1
18
85
9
51
35
2
0
61
1.10
107709588--107709620
15
2.2
15
94
0
57
45
0
9
45
1.35
107718529--107718571
6
7.2
6
94
0
77
48
0
34
16
1.46
107718643--107718714
27
2.7
27
86
0
99
20
9
44
25
1.82
107720749--107720787
19
2.2
17
86
9
51
43
0
7
48
1.31
107720801--107720854
28
2.0
28
85
10
76
29
1
3
64
1.21
107725976--107726014
16
2.4
16
86
0
51
30
25
7
35
1.84
107728256--107728396
76
1.9
76
83
8
189
41
9
7
40
1.67
107729439--107729777
27
12.6
27
82
2
308
40
18
8
32
1.81
107729439--107729694
54
4.8
54
84
0
343
42
17
7
32
1.77
107729430--107729696
107
2.5
107
89
3
394
41
17
7
33
1.78
107729439--107729723
134
2.1
135
85
3
387
41
17
8
32
1.79
107729821--107730009
27
7.0
27
88
0
254
33
19
23
24
1.97
107730438--107730502
22
3.0
22
80
8
78
20
23
23
33
1.97
107730660--107730762
27
3.8
27
82
5
100
20
21
20
37
1.94
107730660--107730762
54
1.9
53
82
2
125
20
21
20
37
1.94
107730900--107730961
24
2.6
24
78
12
65
17
14
16
51
1.76
107732657--107732695
21
2.0
20
90
10
62
30
15
17
35
1.91
107733781--107733825
22
2.0
22
91
0
72
40
13
28
17
1.88
107735707--107735741
10
3.5
10
88
0
52
14
17
5
62
1.49
107739846--107739965
43
2.8
42
77
7
125
32
13
24
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107746818--107746920
49
2.1
48
84
8
129
24
17
29
29
1.97
107754642--107754706
22
3.0
21
72
14
51
4
23
0
72
1.03
107756402--107756450
18
2.9
16
74
11
53
8
10
4
77
1.10
107760460--107760512
27
2.0
27
85
7
72
69
3
3
22
1.20
107760467--107760937
26
18.1
25
74
13
339
63
4
4
27
1.34
107760467--107760912
51
8.6
52
79
8
421
63
4
4
27
1.34
107760517--107760868
185
1.9
182
80
9
401
62
5
4
27
1.36
107762208--107762420
89
2.4
88
80
3
223
30
22
16
30
1.96
107762208--107762422
44
4.9
44
75
5
173
29
22
16
31
1.96
107762496--107762655
44
3.6
44
81
2
169
27
21
20
30
1.98
107767008--107767119
37
3.0
37
96
0
197
51
0
17
30
1.46
107774547--107774585
13
2.9
14
84
7
62
66
5
2
25
1.25
107774545--107774882
129
2.7
126
79
9
323
64
5
3
26
1.32
107774544--107774858
102
3.1
101
80
9
325
63
5
3
27
1.33
107774604--107774882
76
3.7
76
78
11
245
64
5
3
26
1.32
107774473--107774869
50
7.8
50
74
12
301
62
4
4
28
1.34
107774473--107774882
26
16.0
26
74
12
296
62
4
4
28
1.34
107775473--107775516
22
2.0
24
86
13
67
81
9
9
0
0.87
107777159--107777189
15
2.1
15
93
0
53
19
0
25
54
1.44
107777741--107777870
45
2.9
45
88
0
206
23
17
24
34
1.96
107777833--107777954
43
2.9
42
79
4
129
22
19
28
28
1.98
107777835--107777954
41
2.8
42
76
10
120
23
20
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107779024--107779057
14
2.4
14
85
5
50
41
0
14
44
1.45
107781674--107781707
14
2.4
14
85
0
50
38
0
0
61
0.96
107782231--107782264
3
11.3
3
93
0
59
2
0
29
67
1.05
107784094--107784123
15
2.0
15
100
0
60
40
13
13
33
1.83
107785345--107785376
11
2.8
12
86
13
50
75
0
6
18
1.01
107785757--107785781
7
3.6
7
100
0
50
72
28
0
0
0.86
107793860--107793904
18
2.4
19
85
3
65
77
4
4
13
1.07
107801326--107801386
25
2.4
25
89
5
88
36
24
18
21
1.95
107803664--107803710
21
2.2
21
88
0
67
51
2
0
46
1.13
107804911--107804945
12
2.8
13
91
8
63
37
14
0
48
1.44
107805221--107805323
47
2.2
47
84
3
127
33
24
20
22
1.97
107806522--107806586
28
2.7
23
76
21
69
4
23
1
70
1.14
107807093--107807117
3
8.3
3
100
0
50
64
0
0
36
0.94
107808032--107808108
37
2.1
36
87
4
109
31
31
6
31
1.83
107831424--107831469
19
2.4
19
89
7
67
21
19
15
43
1.87
107832143--107832172
15
2.0
15
93
0
51
43
20
10
26
1.83
107849093--107849219
44
2.9
44
91
3
202
31
18
18
31
1.95
107849176--107849693
144
3.7
143
81
9
586
33
18
19
29
1.95
107849469--107849951
45
10.7
45
78
6
422
33
17
20
28
1.95
107849469--107849951
89
5.3
89
78
6
438
33
17
20
28
1.95
107849514--107849876
184
2.0
185
85
1
496
33
17
20
28
1.95
107859131--107859193
31
2.0
31
96
0
117
28
9
25
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107864076--107864126
26
2.0
26
92
0
84
39
21
21
17
1.93
107868523--107868809
137
2.1
137
93
1
486
31
24
18
25
1.98
107870588--107870696
26
4.2
26
95
2
184
36
24
5
33
1.79
107870588--107870696
51
2.1
52
93
1
184
36
24
5
33
1.79
107874473--107874759
137
2.1
137
96
0
520
32
25
18
24
1.97
107876548--107876631
26
3.2
26
96
0
150
36
25
4
33
1.77
107878627--107878656
12
2.5
12
94
0
51
6
16
26
50
1.70
107878852--107878939
40
2.3
38
82
7
97
29
21
15
32
1.95
107879637--107879670
15
2.3
15
94
0
59
17
0
38
44
1.49
107879632--107879682
22
2.3
23
77
12
54
23
0
33
43
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349