genome.fa.s1.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  151  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48142048--48142334	48	5.9	48	75	6	240	29	17	26	26	1.98
48142058--48142329	96	2.8	95	82	5	339	30	17	26	26	1.97
48146204--48146252	13	3.8	13	94	0	89	36	2	20	40	1.64
48146465--48146505	21	1.9	23	85	14	61	26	7	17	48	1.73
48149163--48149189	13	2.1	13	100	0	54	29	14	18	37	1.91
48150150--48150257	26	4.2	26	91	0	180	33	7	23	36	1.83
48151389--48151418	16	1.9	15	93	6	51	53	23	20	3	1.60
48151834--48151973	54	2.6	54	91	2	228	17	23	22	35	1.95
48151834--48151973	27	5.2	27	87	6	178	17	23	22	35	1.95
48157244--48157351	26	4.2	26	93	0	189	32	7	24	36	1.83
48158786--48158860	26	2.8	26	81	4	78	34	21	12	32	1.90
48158968--48159186	27	8.1	27	82	8	259	18	23	23	35	1.96
48158968--48159186	81	2.7	81	87	4	300	18	23	23	35	1.96
48180607--48180728	47	2.6	47	88	0	181	38	13	22	25	1.91
48180715--48180890	55	3.3	54	79	7	196	37	18	22	21	1.94
48180715--48180920	54	3.8	53	77	9	166	38	17	22	20	1.93
48186518--48186630	43	2.7	41	79	9	120	16	33	26	23	1.96
48194998--48195159	43	3.8	43	75	14	138	31	25	17	25	1.97
48195039--48195152	44	2.6	44	82	6	135	29	24	20	25	1.99
48663514--48663671	41	4.0	39	76	8	133	25	26	22	25	2.00
48663514--48663598	41	2.1	39	91	4	134	27	25	22	24	2.00
48663982--48664060	29	2.7	29	82	5	97	26	32	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48664042--48664144	43	2.4	43	100	0	206	26	35	15	22	1.94
48665994--48666072	37	2.1	37	88	4	115	25	30	18	25	1.98
48666191--48666380	47	4.1	47	91	2	294	27	31	9	31	1.88
48669684--48669788	42	2.5	42	74	1	111	25	17	24	32	1.97
48673231--48673488	40	6.5	40	91	2	369	25	27	24	23	2.00
48675557--48675659	37	2.8	37	92	0	161	23	33	21	22	1.98
48675800--48676088	48	6.0	48	96	1	510	30	28	5	34	1.81
48675800--48676088	95	3.0	96	95	2	510	30	28	5	34	1.81
48675800--48676088	143	2.0	144	94	2	510	30	28	5	34	1.81
48679712--48680037	40	8.1	40	92	1	501	25	27	21	25	1.99
48681319--48681421	37	2.8	37	92	0	161	23	33	21	22	1.98
48690818--48690994	40	4.5	40	89	4	227	23	28	25	23	2.00
48690818--48690994	79	2.2	80	85	5	227	23	28	25	23	2.00
48693122--48693299	27	6.6	27	80	3	160	28	29	16	25	1.97
48693143--48693298	82	1.9	81	84	3	206	28	29	16	25	1.97
48706728--48706780	26	2.0	26	100	0	106	39	15	26	18	1.90
48706814--48706852	16	2.4	17	86	4	53	71	10	17	0	1.12
48710107--48710349	40	6.1	40	82	0	256	33	18	26	21	1.96
48710132--48710191	20	3.0	20	65	11	52	26	18	33	21	1.96
48710118--48710350	120	2.0	118	85	3	315	34	18	26	20	1.96
48714765--48714843	37	2.1	37	90	0	122	25	31	18	24	1.98
48714962--48715443	47	10.1	47	93	3	784	29	30	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48714962--48715443	96	5.0	96	94	2	810	29	30	8	31	1.87
48714962--48715443	143	3.4	143	95	1	833	29	30	8	31	1.87
48723559--48723681	28	4.4	28	92	2	185	33	27	12	26	1.92
48730484--48730705	40	5.6	40	88	1	313	21	23	28	26	1.99
48738610--48738906	40	7.5	40	89	2	413	23	23	28	24	2.00
48743906--48743953	24	2.0	24	92	8	80	8	27	22	41	1.82
48745687--48745819	46	2.9	46	79	4	160	21	20	30	28	1.98
48749943--48749983	15	2.7	15	96	3	73	24	7	12	56	1.61
48751116--48751226	56	2.0	56	87	3	161	27	13	24	34	1.93
48751895--48751924	6	5.0	6	91	0	51	0	0	36	63	0.95
48754075--48754197	39	3.1	39	79	6	131	32	15	27	24	1.95
48756520--48756570	25	2.0	25	88	0	75	31	27	17	23	1.97
48758487--48758912	47	9.1	47	93	0	638	34	10	28	26	1.89
48758794--48758869	22	3.3	22	67	25	59	34	10	28	26	1.90
48758894--48759068	46	3.8	46	90	1	244	36	9	30	23	1.87
48760555--48760929	40	9.4	40	95	0	651	25	20	26	26	1.99
48760645--48760751	23	5.2	23	62	25	76	25	18	27	28	1.98
48760957--48761088	57	2.3	57	84	3	169	21	19	30	28	1.98
48761575--48761608	17	2.0	17	100	0	68	35	11	17	35	1.87
48761605--48762763	386	3.0	386	99	0	2311	32	10	21	35	1.88
48764877--48765302	47	9.1	47	92	0	629	34	9	28	26	1.88
48765150--48765221	22	3.1	22	66	24	58	36	8	27	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48765284--48765458	46	3.8	46	89	0	251	35	10	30	23	1.88
48766940--48767274	40	8.4	40	96	0	598	25	20	26	26	1.99
48767030--48767096	23	3.2	23	64	24	65	25	19	26	28	1.99
48767302--48767432	56	2.3	56	84	5	167	22	19	30	28	1.98
48767919--48767952	17	2.0	17	100	0	68	35	11	17	35	1.87
48771230--48771655	47	9.1	47	92	0	629	34	11	28	26	1.90
48771350--48771471	22	5.3	22	62	30	58	31	13	30	25	1.93
48771629--48771810	91	2.0	92	89	1	276	34	9	32	24	1.87
48771629--48771810	46	4.0	46	91	1	276	34	9	32	24	1.87
48776122--48776183	27	2.3	27	85	0	88	30	22	12	33	1.92
48776132--48776189	27	2.1	27	87	0	80	34	15	15	34	1.89
48776794--48776831	18	2.1	19	85	5	51	21	2	18	57	1.52
48780648--48780895	68	3.8	62	73	12	178	29	16	29	24	1.97
48785507--48785639	45	3.0	45	85	0	167	34	27	14	24	1.94
48790359--48790535	27	6.6	27	82	5	178	29	28	15	27	1.96
48790359--48790535	55	3.3	54	82	4	205	29	28	15	27	1.96
48798489--48798666	27	6.6	27	84	3	205	29	28	15	26	1.96
48798510--48798665	82	1.9	81	88	3	233	29	28	15	26	1.96
48809370--48809410	22	2.0	21	85	9	57	29	19	19	31	1.96
48822451--48822646	43	4.6	42	72	6	144	30	17	23	29	1.97
48827559--48827597	17	2.3	17	86	0	51	20	25	30	23	1.98
48829650--48829732	29	2.9	29	75	0	85	39	18	16	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48834431--48834634	53	3.8	53	77	3	201	38	18	22	20	1.94
48840690--48841181	253	1.9	252	85	3	677	36	9	20	33	1.86
48844145--48844202	28	2.1	28	93	0	98	29	6	20	43	1.78
48844646--48844853	53	3.9	53	77	3	209	37	17	24	21	1.94
48852054--48852540	40	12.2	40	93	0	796	24	27	19	28	1.98
48859491--48860004	40	13.2	40	89	5	777	25	27	19	28	1.99
48859491--48860004	78	6.6	80	89	5	777	25	27	19	28	1.99
48864702--48864873	93	1.8	93	93	0	299	27	30	22	20	1.98
48864695--48864870	46	3.8	46	77	12	198	28	30	21	19	1.98
48864744--48864882	47	3.0	46	74	16	135	28	28	20	22	1.98
48875217--48875291	36	2.1	36	97	0	141	48	20	0	32	1.50
48882267--48882373	27	3.9	28	83	3	112	22	23	20	33	1.97
48887894--48887919	11	2.4	11	100	0	52	53	19	0	26	1.45
48888380--48888493	27	4.3	27	84	6	144	31	13	16	38	1.87
48888380--48888493	52	2.1	54	87	3	160	31	13	16	38	1.87
48888446--48888624	27	6.6	27	79	5	191	28	10	22	38	1.87
48888394--48888624	54	4.3	54	82	5	238	29	10	20	38	1.87
48888393--48888624	81	2.9	81	77	8	217	29	10	21	38	1.87
48888941--48889004	28	2.3	28	89	5	94	28	35	17	18	1.93
48895719--48896241	47	11.1	47	95	0	875	32	8	29	28	1.88
48896360--48896438	37	2.1	37	88	4	115	25	18	30	25	1.98
48901117--48901146	3	10.0	3	100	0	60	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48903194--48903278	25	3.2	25	64	23	66	23	24	15	36	1.93
48903041--48903302	54	4.9	54	85	5	341	23	24	16	36	1.94
48904115--48904171	30	1.9	30	85	0	78	35	19	8	36	1.83
48911843--48911940	42	2.3	42	79	11	119	32	26	16	24	1.96
48914173--48914212	21	2.0	20	90	5	62	42	22	0	35	1.54
48920205--48920286	42	1.9	43	92	2	139	21	10	24	42	1.85
48920224--48920286	20	3.0	20	68	8	63	19	9	28	42	1.82
48922378--48922651	75	3.6	75	89	1	388	35	18	16	29	1.93
48922378--48922621	75	3.2	75	91	2	391	36	18	15	29	1.91
48923273--48923305	17	1.9	17	88	11	50	42	21	3	33	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349