genome.fa.s1.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  138  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44497025--44497076	26	2.0	26	100	0	104	15	15	30	38	1.88
44496989--44497115	65	2.0	65	93	0	218	17	18	29	33	1.94
44497054--44497314	39	6.7	39	91	2	400	18	22	29	29	1.97
44499802--44500019	79	2.7	80	81	7	230	25	26	22	25	2.00
44499816--44500019	40	5.1	40	81	7	227	25	26	22	25	2.00
44501148--44501323	56	3.1	56	99	0	343	22	23	9	44	1.81
44506549--44506613	28	2.3	28	86	0	94	38	9	23	29	1.85
44506686--44506868	39	4.6	39	84	2	197	19	20	27	31	1.97
44512094--44512226	69	1.9	70	89	1	205	31	14	17	36	1.89
44514005--44514244	48	5.0	48	92	2	390	34	7	28	30	1.84
44514005--44514244	98	2.5	96	90	2	390	34	7	28	30	1.84
44514384--44514494	37	3.0	37	88	2	152	29	18	25	26	1.98
44523337--44523392	23	2.4	23	85	8	69	57	8	17	16	1.64
44535953--44536170	40	5.5	40	92	1	341	23	23	27	25	2.00
44538858--44538901	22	2.0	23	81	4	54	47	20	2	29	1.62
44542819--44542939	28	4.3	28	84	4	145	23	11	35	28	1.90
44545295--44545414	40	3.0	40	82	4	170	26	27	21	24	1.99
44552817--44552973	40	4.0	40	84	4	185	26	28	19	24	1.99
44555240--44555439	108	1.9	108	91	2	330	23	21	26	29	1.99
44557453--44557560	54	2.0	54	94	0	189	37	10	17	34	1.84
44558100--44558260	38	4.2	38	82	7	166	23	23	23	29	1.99
44558131--44558282	38	3.9	39	85	5	121	21	21	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44560327--44560501	49	3.5	49	84	4	235	30	25	18	26	1.98
44560308--44560506	100	2.0	100	93	2	337	30	25	19	25	1.98
44565667--44565829	43	3.8	43	72	10	118	33	25	16	24	1.96
44580201--44580376	46	3.8	46	79	12	216	20	21	29	28	1.98
44580198--44580369	93	1.8	93	96	0	317	20	21	29	27	1.98
44582630--44582774	43	3.4	42	76	12	152	32	24	18	24	1.97
44584516--44584601	40	2.1	41	78	6	95	36	22	18	23	1.95
44587575--44587731	43	3.7	42	70	10	113	25	19	23	31	1.98
44593049--44593258	27	7.6	27	82	8	217	40	20	9	30	1.84
44593049--44593258	54	3.8	53	85	8	249	40	20	9	30	1.84
44593075--44593339	27	9.7	27	77	16	165	40	20	9	29	1.84
44593075--44593356	81	3.4	81	81	12	218	40	20	9	30	1.83
44593049--44593339	54	5.3	54	80	11	229	40	20	9	29	1.83
44593102--44593396	81	3.6	81	77	12	212	39	20	8	30	1.83
44593224--44593393	27	6.3	26	73	9	101	40	20	8	31	1.82
44593385--44594067	27	25.3	27	86	0	828	36	18	20	24	1.95
44594512--44594576	22	3.0	22	77	8	69	20	21	23	35	1.96
44594735--44594836	27	3.8	27	83	5	107	18	22	20	38	1.94
44594735--44594836	54	1.9	53	81	2	123	18	22	20	38	1.94
44594973--44595038	31	2.1	32	91	2	107	21	12	15	51	1.75
44594984--44595054	31	2.3	31	82	4	81	19	16	15	47	1.82
44596078--44596139	30	2.1	30	100	0	124	32	3	37	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44597071--44597382	80	3.9	80	83	2	315	39	19	10	31	1.85
44597071--44597382	27	11.6	27	83	5	319	39	19	10	31	1.85
44597428--44598267	27	30.9	27	84	3	1013	35	17	21	24	1.95
44598705--44598764	22	2.7	22	84	5	68	20	21	25	33	1.97
44598923--44599021	27	3.7	26	83	5	108	19	21	20	39	1.93
44598923--44599024	54	1.9	53	83	2	132	18	21	20	39	1.93
44599184--44599317	6	21.8	6	70	15	87	20	17	14	47	1.83
44599169--44599300	31	4.3	31	92	0	192	19	18	13	48	1.81
44601423--44601562	44	3.3	42	82	8	140	25	18	25	30	1.98
44601423--44601583	43	3.8	42	78	11	132	24	16	26	32	1.96
44603332--44603554	40	5.6	40	89	2	324	23	23	27	25	2.00
44611443--44611665	40	5.6	40	89	1	304	23	21	27	26	1.99
44618784--44618928	40	3.6	40	93	0	254	26	29	22	22	1.99
44627184--44627209	8	3.2	8	100	0	52	88	0	0	11	0.52
44630414--44630563	42	3.6	41	78	7	158	30	16	21	31	1.95
44636663--44636995	54	6.2	54	88	2	427	35	18	20	26	1.95
44636663--44636995	27	12.3	27	86	1	371	35	18	20	26	1.95
44638120--44638240	37	3.3	37	92	0	206	24	31	19	24	1.98
44638387--44638522	46	3.0	45	89	2	182	27	30	8	33	1.86
44638496--44639020	47	11.1	47	81	9	627	27	30	12	30	1.93
44638578--44638998	98	4.3	98	94	0	729	27	29	12	30	1.93
44638496--44638999	196	2.6	194	90	4	782	26	30	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44638946--44639021	23	3.3	23	63	23	59	28	30	10	30	1.90
44642570--44642961	40	9.8	40	92	0	658	25	28	21	24	1.99
44644177--44644299	37	3.3	37	94	0	210	25	30	19	24	1.98
44644443--44644579	46	3.0	46	89	0	202	25	30	8	35	1.85
44644553--44645030	47	10.1	47	78	10	470	26	29	12	30	1.93
44644635--44645030	51	8.1	49	86	6	461	26	29	13	30	1.94
44644673--44645030	98	3.7	94	86	7	482	26	29	13	30	1.94
44644635--44645030	149	2.7	147	92	3	656	26	29	13	30	1.94
44644956--44645031	23	3.3	23	63	23	59	28	30	11	28	1.92
44648014--44648075	31	2.0	32	87	3	90	20	24	19	35	1.96
44655314--44655396	42	2.0	42	97	0	157	32	15	20	31	1.94
44656495--44656618	40	3.1	40	84	2	167	33	25	16	24	1.95
44657819--44657876	27	2.1	28	84	9	75	37	12	18	31	1.88
44666475--44666536	28	2.2	28	88	0	97	37	11	20	30	1.88
44666648--44666776	43	3.0	43	81	10	138	25	19	29	25	1.98
44666709--44666803	41	2.3	43	83	7	115	28	21	29	21	1.98
44666709--44666856	40	3.6	41	74	5	138	26	21	29	22	1.99
44669761--44669813	21	2.5	21	100	0	106	15	20	33	30	1.93
44682558--44682674	27	4.3	28	84	4	143	40	17	8	34	1.80
44682581--44682691	54	2.1	54	83	6	136	38	18	9	34	1.82
44682682--44682861	27	6.7	27	85	3	211	28	22	8	39	1.84
44682761--44682876	54	2.1	54	82	0	133	29	20	10	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44682856--44683093	27	8.7	27	75	7	178	40	18	8	31	1.82
44683125--44683216	27	3.4	27	83	8	107	35	20	25	18	1.95
44684473--44684528	11	5.5	11	71	16	57	35	12	19	32	1.89
44684462--44684528	20	3.3	20	93	0	116	34	11	20	32	1.90
44684577--44684845	49	5.5	49	88	3	391	29	21	20	28	1.98
44684577--44684845	24	11.0	24	89	3	387	29	21	20	28	1.98
44684578--44684825	123	2.0	122	92	0	415	30	20	20	28	1.98
44687217--44687307	27	3.4	28	82	11	100	38	18	9	32	1.84
44687241--44687320	27	3.0	26	82	14	74	37	18	12	31	1.88
44687315--44687523	27	7.7	27	85	2	249	27	24	7	40	1.82
44687501--44687639	27	5.1	27	78	3	136	39	22	7	30	1.82
44687430--44687534	54	1.9	54	84	0	138	32	20	6	40	1.79
44687366--44687542	81	2.2	81	80	2	185	29	23	7	39	1.83
44687501--44687639	54	2.6	54	83	4	181	39	22	7	30	1.82
44687516--44687670	81	1.9	81	81	2	186	40	20	8	30	1.82
44687515--44687639	27	4.7	26	82	5	142	41	20	8	29	1.81
44687474--44687668	27	7.2	27	79	5	108	38	21	7	32	1.81
44687564--44687668	54	1.9	54	83	7	133	40	20	8	31	1.82
44687784--44687875	27	3.4	26	87	3	121	33	20	25	20	1.97
44687771--44687875	27	3.9	27	81	8	117	34	21	21	21	1.97
44688502--44688543	14	3.1	14	80	12	52	35	16	26	21	1.94
44689132--44689187	11	5.5	11	71	16	57	35	12	19	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44689121--44689187	20	3.3	20	93	0	116	34	11	20	32	1.90
44689236--44689503	24	11.0	24	89	3	369	30	21	21	27	1.98
44690928--44691024	28	3.5	27	78	10	106	29	29	15	24	1.96
44690926--44691034	56	1.9	57	85	9	152	31	28	14	25	1.95
44696559--44696609	25	2.0	25	88	7	77	29	19	17	33	1.95
44696653--44696697	10	4.4	10	83	5	54	33	17	15	33	1.92
44696741--44696804	25	2.6	25	89	0	92	26	28	21	23	1.99
44704403--44704447	10	4.4	10	86	5	63	35	20	15	28	1.93
44704403--44704447	21	2.2	20	88	4	63	35	20	15	28	1.93
44704493--44704560	25	2.7	25	86	0	91	27	25	22	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349