genome.fa.s1.2.7.7.80.10.50.1000.265.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  265  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88617738--88617815	40	1.9	41	82	10	97	26	28	20	24	1.99
88626056--88626176	47	2.6	47	89	0	188	35	13	25	25	1.92
88626156--88626352	55	3.6	55	81	4	222	35	19	24	19	1.95
88626156--88626363	53	3.9	54	81	4	213	35	19	25	20	1.96
88632625--88632897	47	5.9	45	75	7	152	33	17	25	23	1.96
88632631--88632888	142	1.8	140	80	6	315	34	17	25	23	1.96
88632870--88633058	55	3.5	54	76	7	152	34	19	23	21	1.96
88633770--88633835	31	2.1	31	94	0	114	54	9	10	25	1.64
88639419--88639454	18	1.9	19	88	5	56	19	2	11	66	1.35
88648535--88648585	27	1.9	26	88	4	75	37	17	25	19	1.94
88662131--88662319	40	4.8	40	86	3	242	23	23	28	24	2.00
88662128--88662319	79	2.5	77	83	5	242	24	22	28	24	2.00
88670164--88670316	40	3.7	43	80	13	155	24	24	28	22	1.99
88682773--88682951	85	2.1	85	98	0	349	26	27	8	37	1.85
88684560--88684908	40	8.8	40	92	1	587	25	28	22	24	1.99
88686123--88686200	37	2.1	36	86	4	111	26	32	16	24	1.96
88686319--88686733	47	8.7	47	94	2	706	29	29	7	33	1.86
88686319--88686733	96	4.4	94	95	1	706	29	29	7	33	1.86
88686319--88686712	143	2.8	143	95	2	702	29	28	7	33	1.86
88688577--88688755	85	2.1	85	97	0	340	26	27	8	37	1.85
88690676--88690780	53	2.0	53	84	0	138	19	23	20	37	1.94
88695566--88695805	129	1.9	128	88	0	363	40	17	10	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88699095--88699195	38	2.7	38	85	0	130	22	19	26	30	1.98
88699193--88699476	43	6.6	43	93	0	469	11	25	31	31	1.92
88701978--88702011	9	3.7	9	88	4	50	52	0	11	35	1.38
88710619--88710741	28	4.4	28	90	2	176	26	13	27	32	1.93
88710644--88710754	28	4.0	27	89	3	134	29	12	25	32	1.93
88718594--88718716	28	4.4	28	90	2	176	26	13	27	32	1.93
88718619--88718729	28	4.0	27	89	3	134	29	12	25	32	1.93
88728064--88728233	43	4.0	42	75	8	119	21	20	24	34	1.97
88728070--88728228	42	3.7	42	75	5	131	22	21	25	31	1.98
88741076--88741115	6	6.8	6	82	5	55	55	0	25	20	1.44
88744787--88744820	17	2.0	17	100	0	68	47	23	11	17	1.81
88748735--88748794	27	2.3	26	85	2	75	35	20	23	21	1.96
88748762--88748900	66	2.0	66	86	6	188	30	22	28	18	1.97
88749535--88749681	27	5.4	27	84	4	170	27	20	17	35	1.94
88749536--88749681	56	2.6	56	83	4	172	27	20	16	35	1.94
88756332--88756472	67	2.1	67	82	6	167	30	21	28	19	1.98
88757109--88757222	54	2.1	54	90	1	176	26	21	16	35	1.95
88757106--88757222	27	4.3	27	85	0	144	26	21	17	35	1.95
88760655--88760686	8	3.8	9	91	8	50	59	0	12	28	1.34
88761302--88761358	18	3.1	18	75	12	53	24	42	0	33	1.55
88762716--88762801	28	3.1	28	80	9	106	34	22	20	22	1.96
88764949--88764973	12	2.1	12	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88770984--88771087	28	3.7	28	84	0	136	34	19	24	22	1.96
88777437--88777591	27	5.7	27	78	6	152	28	27	16	27	1.97
88777442--88777591	81	1.9	80	84	4	203	28	27	16	28	1.97
88785420--88785596	27	6.6	26	80	5	124	29	28	15	26	1.96
88785440--88785595	27	5.7	27	81	4	170	28	28	16	26	1.97
88785420--88785596	55	3.3	55	80	9	211	29	28	15	26	1.96
88785440--88785595	82	1.9	81	85	3	215	28	28	16	26	1.97
88789063--88789269	39	5.3	40	83	11	261	29	25	20	24	1.99
88789063--88789279	77	2.8	79	84	6	266	29	25	20	24	1.99
88799079--88799339	39	6.7	40	87	8	328	25	22	27	24	2.00
88799079--88799339	79	3.3	79	85	9	324	25	22	27	24	2.00
88799079--88799372	79	3.7	77	83	10	289	26	22	27	24	2.00
88817048--88817090	12	3.6	11	81	12	50	34	0	48	16	1.46
88818503--88818602	27	3.7	27	86	0	128	37	13	16	34	1.87
88818589--88818775	80	2.3	81	82	5	218	39	18	17	24	1.92
88818582--88818776	27	7.3	27	82	9	184	38	18	16	25	1.92
88818588--88818774	54	3.5	53	83	5	216	39	18	17	24	1.92
88818677--88818793	27	4.3	27	86	4	139	40	15	16	28	1.88
88818677--88818793	54	2.2	54	86	6	157	40	15	16	28	1.88
88819187--88819254	18	3.8	18	75	11	59	25	22	16	36	1.94
88823683--88823724	21	2.0	21	85	0	57	21	23	16	38	1.93
88823725--88823800	20	3.8	20	75	8	73	11	26	21	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88823704--88823800	20	4.8	20	71	8	63	12	26	20	40	1.88
88830311--88830536	43	5.3	43	80	7	244	27	11	26	34	1.92
88836193--88836226	17	1.9	18	88	5	52	50	5	5	38	1.51
88845426--88845480	15	3.7	14	83	11	65	56	14	14	14	1.68
88852934--88853101	81	2.1	81	80	4	187	28	25	13	32	1.94
88856760--88856825	34	1.9	34	90	0	105	40	3	28	27	1.71
88860654--88860961	40	7.7	40	95	0	535	22	26	19	31	1.98
88866340--88866394	27	2.0	27	100	0	110	27	10	14	47	1.78
88871619--88871819	98	2.1	98	99	0	393	27	19	28	24	1.98
88873401--88873448	25	1.9	25	91	0	78	35	25	14	25	1.94
88873492--88873549	20	2.9	20	97	0	107	34	12	20	32	1.90
88873496--88873549	11	5.3	11	70	17	53	35	12	20	31	1.90
88873600--88873718	23	5.1	23	93	2	202	28	20	20	31	1.97
88875933--88875976	19	2.4	19	85	7	56	50	0	9	40	1.34
88878455--88878492	20	1.9	20	100	0	76	34	13	21	31	1.91
88878542--88878659	23	5.0	24	89	5	170	27	20	22	29	1.98
88902447--88902629	39	4.6	39	81	8	201	24	21	27	25	1.99
88902443--88902627	79	2.3	78	85	5	239	25	21	27	25	2.00
88902443--88902662	79	2.8	76	79	10	228	26	20	26	25	1.99
88904911--88905094	40	4.6	40	83	8	214	25	22	26	25	2.00
88909515--88909576	30	2.1	30	90	0	97	35	20	16	27	1.94
88916668--88916729	30	2.1	30	96	0	115	35	20	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88930607--88930691	27	3.1	27	87	0	116	28	14	16	41	1.87
88932459--88932630	79	2.2	79	84	3	220	25	21	27	25	1.99
88932406--88932628	40	5.6	39	81	8	209	25	21	27	25	1.99
88932486--88932663	79	2.2	80	80	3	191	25	21	28	24	1.99
88934152--88934215	28	2.3	28	94	0	110	23	35	18	21	1.95
88943251--88943284	18	1.9	18	88	5	52	29	8	20	41	1.82
88944345--88944420	29	2.6	29	82	0	107	31	26	14	27	1.95
88944330--88944444	29	4.0	28	79	2	104	28	28	14	27	1.95
88944656--88944697	16	2.6	16	84	0	57	11	23	14	50	1.76
88948046--88948213	40	4.2	40	82	8	148	27	27	20	24	1.99
88948083--88948213	40	3.3	40	89	2	201	28	27	20	23	1.99
88948046--88948266	80	2.8	80	79	11	229	26	27	21	24	1.99
88956006--88956172	40	4.2	40	81	9	139	27	26	20	24	1.99
88956043--88956172	40	3.3	40	88	3	192	28	26	20	23	1.99
88961924--88961980	25	2.2	26	78	6	62	63	3	1	31	1.22
88962796--88962842	22	2.2	20	85	14	60	53	0	2	44	1.12
88966179--88966263	42	2.0	42	95	0	152	27	20	16	36	1.93
88970476--88970653	27	6.6	27	84	3	205	29	28	15	26	1.96
88970497--88970652	82	1.9	81	88	3	233	29	28	15	26	1.96
88977492--88977669	27	6.6	27	84	3	205	29	28	15	26	1.96
88977513--88977668	82	1.9	81	88	3	233	29	28	15	26	1.96
88980249--88980365	46	2.5	47	86	5	148	29	17	29	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88994362--88994451	45	2.0	45	100	0	180	24	15	17	42	1.88
88996136--88996238	46	2.2	48	82	3	120	35	14	23	26	1.93
88997571--88997728	82	2.0	80	86	7	221	19	28	16	35	1.94
88997564--88997754	41	4.7	40	76	11	156	19	26	16	36	1.93
89000956--89000991	17	2.1	17	100	0	72	36	11	16	36	1.84
89005032--89005230	27	7.4	27	82	4	222	28	24	9	38	1.85
89005032--89005240	81	2.6	81	83	3	262	28	23	9	38	1.85
89005261--89005428	81	2.1	81	88	2	248	41	22	6	29	1.79
89005233--89005411	27	6.6	27	88	3	254	41	22	8	27	1.83
89005340--89005496	27	5.7	27	75	10	104	43	19	7	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349