Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  333  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110466269--110466309
21
1.9
22
90
5
66
36
4
9
48
1.58
110482607--110482639
17
2.0
17
94
5
59
36
15
0
48
1.45
110482925--110483106
46
4.0
46
89
4
260
20
23
14
41
1.90
110486136--110486197
27
2.3
26
76
13
63
38
1
11
48
1.49
110498971--110499012
20
2.0
21
95
4
77
54
0
4
40
1.21
110498952--110499047
20
4.8
20
73
6
70
58
0
3
38
1.14
110500469--110500511
16
2.5
18
81
11
54
55
6
0
37
1.27
110511124--110511176
20
2.8
18
83
16
63
35
1
0
62
1.06
110513479--110513514
3
12.0
3
100
0
72
66
0
0
33
0.92
110515820--110515850
14
2.2
14
94
0
53
12
9
0
77
0.99
110524156--110524184
12
2.3
13
94
5
51
72
0
6
20
1.07
110524339--110524371
16
2.1
16
88
11
50
57
6
9
27
1.53
110525840--110526139
84
3.6
85
86
6
380
20
22
20
37
1.95
110525868--110526006
43
3.2
43
66
16
108
20
21
20
36
1.95
110526350--110526490
44
3.2
44
72
9
151
31
19
22
26
1.97
110526091--110526445
177
2.0
177
87
2
516
27
22
20
29
1.98
110526371--110526536
45
3.7
45
76
7
194
30
21
21
27
1.98
110526350--110526534
89
2.1
89
92
0
307
30
20
22
26
1.98
110526664--110526791
64
2.0
64
84
3
168
39
11
17
32
1.85
110527427--110527517
48
1.9
47
88
2
137
8
29
16
45
1.78
110539882--110539914
16
2.1
16
88
11
50
57
6
9
27
1.53
110542667--110542704
19
2.1
19
85
5
51
60
7
5
26
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110542950--110543003
25
2.3
23
81
15
58
55
3
3
37
1.35
110544943--110544972
13
2.4
13
94
5
53
60
6
0
33
1.23
110553857--110553898
18
2.5
18
81
11
54
33
0
4
61
1.17
110553989--110554036
16
3.1
16
81
3
62
66
0
0
33
0.92
110554675--110554723
18
2.7
18
84
12
64
57
2
2
38
1.22
110560839--110560889
20
2.5
19
75
22
50
37
0
0
62
0.95
110571607--110571657
21
2.5
20
81
6
59
49
1
0
49
1.12
110571629--110571701
32
2.4
29
78
17
76
56
1
2
39
1.22
110572360--110572386
6
4.5
6
100
0
54
0
14
48
37
1.45
110582567--110582700
46
2.9
46
79
2
142
32
20
19
28
1.97
110583695--110583755
31
2.0
31
90
6
97
27
31
18
22
1.97
110583851--110584047
35
5.6
35
81
3
209
34
22
10
31
1.89
110583851--110584047
105
1.9
105
82
2
252
34
22
10
31
1.89
110588190--110588247
25
2.3
27
77
19
72
58
8
0
32
1.28
110589622--110589646
13
1.9
13
100
0
50
72
28
0
0
0.86
110596107--110596144
19
2.0
19
100
0
76
36
10
0
52
1.36
110596186--110596224
19
2.1
19
90
0
60
46
7
12
33
1.71
110604748--110605071
178
1.8
178
93
0
558
25
11
22
40
1.87
110609312--110609352
17
2.4
18
80
8
50
14
24
4
56
1.58
110611602--110611640
11
3.6
11
96
3
71
10
5
7
76
1.13
110613977--110614042
26
2.5
26
80
0
78
36
4
19
39
1.72
110621301--110621349
25
1.9
26
84
12
66
69
2
16
12
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110621826--110621891
23
3.0
23
75
6
82
16
19
22
40
1.91
110627334--110627382
25
1.9
26
84
12
66
69
2
16
12
1.28
110627408--110627448
4
10.8
4
82
10
50
75
0
24
0
0.80
110627409--110627448
15
2.7
15
84
0
53
77
0
22
0
0.77
110627871--110627925
21
2.5
23
85
11
87
16
23
25
34
1.95
110629228--110629588
100
3.6
98
83
5
406
32
16
25
26
1.96
110630105--110630203
17
5.6
17
88
7
144
38
12
12
37
1.80
110630097--110630203
35
3.0
35
94
4
178
38
11
13
37
1.80
110630105--110630203
18
5.6
18
90
4
157
38
12
12
37
1.80
110630682--110630747
17
3.9
17
71
23
59
34
1
0
63
1.04
110632805--110632843
17
2.3
17
95
0
69
30
15
28
25
1.96
110634034--110634086
24
2.2
24
82
0
61
54
9
3
32
1.50
110634186--110634260
24
3.2
23
78
16
73
14
25
13
46
1.81
110634195--110634260
24
2.7
23
83
2
78
16
28
12
42
1.84
110636793--110636827
11
3.1
12
88
12
56
34
0
0
65
0.93
110636793--110636843
21
2.4
22
80
6
61
41
0
0
58
0.98
110636956--110637018
30
2.1
30
94
5
110
57
17
3
22
1.54
110637048--110637090
22
2.0
22
85
0
59
55
9
13
20
1.66
110655293--110655384
34
2.7
33
77
11
87
63
3
3
30
1.26
110655558--110655660
3
33.3
3
69
23
63
64
1
1
32
1.16
110655552--110655660
15
6.9
15
77
16
89
64
1
1
32
1.15
110655558--110655662
18
5.8
18
73
17
94
63
1
1
32
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110655559--110655655
27
3.5
29
75
12
98
63
2
2
31
1.17
110657521--110658005
88
5.5
88
66
13
264
27
18
19
34
1.96
110657423--110657921
87
5.7
87
67
14
247
28
19
18
33
1.96
110657463--110658022
175
3.2
174
89
3
786
26
19
19
34
1.96
110662208--110662257
14
3.5
14
79
15
50
40
10
26
24
1.86
110665895--110665945
18
2.9
18
72
13
52
64
1
1
31
1.15
110666163--110666265
3
33.3
3
69
23
63
64
1
1
32
1.16
110666157--110666265
15
6.9
15
77
16
89
64
1
1
32
1.15
110666163--110666267
18
5.8
18
73
17
94
63
1
1
32
1.16
110666164--110666260
27
3.5
29
75
12
98
63
2
2
31
1.17
110669244--110669324
17
4.8
17
95
1
146
17
28
40
13
1.87
110669393--110669436
18
2.5
18
85
3
63
13
31
38
15
1.87
110672131--110672244
59
1.9
59
96
0
210
37
8
8
44
1.67
110672434--110672490
22
2.6
21
76
20
62
59
0
5
35
1.20
110673574--110673627
28
1.9
28
81
7
65
29
5
16
48
1.69
110678286--110678322
16
2.3
16
90
9
58
54
5
2
37
1.38
110678846--110678913
18
3.9
17
71
17
59
44
1
1
52
1.19
110684508--110684534
14
1.9
14
100
0
54
29
0
33
37
1.58
110688526--110688596
20
3.6
19
79
9
72
57
7
0
35
1.26
110689413--110689514
31
3.4
31
74
10
113
51
3
2
41
1.35
110689410--110689523
58
2.0
58
92
0
192
50
3
2
42
1.33
110690169--110690233
23
3.0
22
77
16
64
36
6
15
41
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110690177--110690233
23
2.5
22
83
10
71
35
5
17
42
1.72
110691314--110691399
40
2.2
40
91
0
145
24
29
23
23
1.99
110699491--110699603
40
2.8
40
89
4
167
23
28
23
23
2.00
110703616--110703645
9
3.3
9
100
0
60
20
0
0
80
0.72
110705258--110705289
5
6.6
5
92
7
57
18
0
0
81
0.70
110705258--110705288
9
3.3
9
91
8
53
19
0
0
80
0.71
110717952--110718184
126
1.8
126
98
0
448
37
16
16
28
1.91
110718295--110718344
13
4.2
12
80
14
52
68
0
4
28
1.08
110718653--110718683
14
2.2
14
94
0
53
67
0
0
32
0.91
110718655--110718691
19
2.0
18
94
5
65
67
0
0
32
0.91
110718664--110718804
63
2.2
64
80
10
166
62
5
4
26
1.38
110719079--110719151
18
4.0
18
71
16
69
17
1
54
26
1.51
110719093--110719163
37
1.9
37
97
0
133
18
1
52
28
1.54
110719134--110719190
29
2.0
29
86
6
80
19
3
45
31
1.67
110719547--110719572
7
3.7
7
100
0
52
26
0
0
73
0.84
110720901--110721044
33
4.3
33
70
6
101
33
15
22
27
1.95
110721021--110721093
33
2.2
33
80
4
85
30
19
27
23
1.98
110722956--110723030
21
3.5
22
83
7
91
38
26
21
13
1.90
110723413--110723470
15
3.8
15
84
11
82
51
13
0
34
1.42
110723416--110723475
30
2.1
28
93
6
102
55
13
0
31
1.39
110726540--110726575
17
2.1
17
89
0
54
77
0
2
19
0.88
110728180--110728220
17
2.5
17
88
4
57
73
0
7
19
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110728185--110728248
17
3.8
18
78
12
55
76
0
7
15
1.00
110728421--110728478
19
3.0
19
80
14
57
63
1
31
3
1.21
110728446--110728489
19
2.3
19
80
7
54
70
2
25
2
1.10
110734634--110734834
76
2.6
76
85
0
276
28
18
19
32
1.96
110735991--110736034
18
2.4
17
78
14
52
22
13
2
61
1.43
110739049--110739082
17
2.0
17
94
0
59
14
11
26
47
1.79
110743761--110743792
10
3.3
10
95
4
57
62
0
6
31
1.20
110756027--110756063
18
2.0
19
89
5
58
51
0
2
45
1.15
110757387--110757502
18
6.4
18
80
0
106
34
12
16
36
1.87
110757387--110757502
54
2.1
54
82
0
133
34
12
16
36
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349