genome.fa.s1.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  113  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35547088--35547166	29	2.7	29	86	5	106	27	32	15	24	1.95
35547148--35547336	43	4.4	43	96	0	342	26	36	13	22	1.92
35548759--35549112	47	7.6	47	93	4	567	29	29	8	33	1.87
35548759--35549112	143	2.5	143	91	5	566	29	29	8	33	1.87
35552705--35552766	28	2.3	27	91	5	99	37	27	8	27	1.85
35552870--35552982	27	4.2	26	84	7	136	16	22	23	38	1.93
35553817--35553880	31	2.1	31	90	0	101	23	21	15	39	1.92
35554074--35554190	23	5.0	24	88	7	161	29	21	21	28	1.98
35554240--35554280	20	2.0	20	95	0	73	39	19	7	34	1.80
35554240--35554276	11	3.5	11	82	14	51	37	18	8	35	1.81
35554323--35554370	25	1.9	25	91	0	78	27	12	22	37	1.90
35561196--35561415	78	2.8	79	83	6	259	25	27	21	24	1.99
35561198--35561419	118	1.9	120	82	7	283	25	27	22	24	2.00
35561196--35561419	40	5.7	40	84	7	269	25	27	22	24	2.00
35573256--35573453	54	3.7	54	91	1	317	19	26	22	32	1.97
35573259--35573453	27	7.2	27	80	14	217	19	26	22	32	1.97
35576656--35576680	13	1.9	13	100	0	50	32	16	16	36	1.90
35578596--35579331	47	15.6	47	93	2	1242	32	8	28	30	1.86
35578596--35579331	143	5.2	143	94	2	1254	32	8	28	30	1.86
35579450--35579551	37	2.8	37	95	0	177	24	18	30	26	1.98
35580817--35581128	40	7.8	40	91	2	425	24	20	27	26	1.99
35580817--35581128	80	3.9	80	91	0	473	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35582936--35582960	13	1.9	13	100	0	50	32	16	16	36	1.90
35584267--35584313	23	2.0	23	100	0	94	17	25	17	40	1.90
35584897--35585348	47	9.6	47	93	2	746	33	8	28	29	1.87
35584897--35585348	143	3.2	141	93	3	748	33	8	28	29	1.87
35585467--35585568	37	2.8	37	89	0	150	24	17	30	27	1.97
35590046--35590101	26	2.2	26	100	0	112	30	7	26	35	1.83
35590783--35590922	27	5.2	27	80	13	173	18	24	22	34	1.96
35590780--35590922	53	2.7	54	92	4	236	18	24	23	34	1.96
35590783--35590940	27	5.9	26	82	8	140	19	24	21	34	1.97
35590780--35590940	53	3.0	53	85	9	213	19	24	21	34	1.96
35605501--35605666	46	3.5	46	81	14	162	24	30	19	25	1.98
35626529--35626589	30	2.1	29	90	3	95	24	16	21	37	1.93
35631051--35631235	40	4.7	40	81	7	191	24	21	28	26	1.99
35631051--35631203	79	1.9	80	82	6	195	24	20	28	26	1.99
35631085--35631258	79	2.2	78	78	11	176	27	20	26	26	1.99
35639367--35639404	3	12.7	3	94	0	67	31	2	0	65	1.06
35641067--35641128	26	2.3	27	86	10	92	37	27	8	27	1.85
35641235--35641340	27	3.9	27	87	2	142	20	24	19	34	1.96
35641237--35641345	55	2.0	54	87	5	157	21	22	19	36	1.95
35656918--35657094	40	4.4	40	83	4	225	23	22	27	26	1.99
35657322--35657363	22	1.9	22	85	9	59	33	9	14	42	1.78
35662165--35662234	27	2.6	27	95	2	113	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35662165--35662262	28	3.5	28	90	2	135	31	28	13	26	1.94
35668016--35668192	40	4.4	40	82	4	198	24	22	27	25	2.00
35668016--35668192	80	2.2	80	85	5	225	24	22	27	25	2.00
35668420--35668461	22	1.9	22	85	9	59	33	9	14	42	1.78
35670015--35670085	34	2.1	34	89	5	108	26	22	26	23	2.00
35680238--35680362	55	2.3	55	81	0	133	29	30	24	15	1.95
35686812--35686917	40	2.6	39	79	7	106	31	15	24	29	1.95
35696392--35696459	33	2.0	34	88	2	102	23	27	22	26	1.99
35696371--35696496	60	2.1	61	83	4	157	26	26	23	23	2.00
35696843--35697068	27	8.4	26	83	7	195	26	19	17	36	1.94
35696843--35697066	54	4.2	53	84	6	254	26	19	17	36	1.94
35696861--35697065	107	1.9	107	86	2	295	24	19	19	37	1.94
35697103--35697365	132	2.0	132	96	0	481	30	28	20	19	1.97
35699027--35699251	40	5.7	40	80	9	210	25	21	28	25	1.99
35699080--35699251	79	2.2	78	82	7	204	25	21	28	25	1.99
35699107--35699284	79	2.2	80	81	3	191	25	21	28	24	1.99
35707044--35707221	27	6.6	27	83	3	205	26	15	28	29	1.96
35707045--35707200	82	1.9	81	88	3	233	26	15	28	29	1.96
35707041--35707221	82	2.2	81	83	2	229	27	15	27	29	1.96
35715227--35715404	27	6.6	27	83	3	205	26	15	28	29	1.96
35715228--35715383	82	1.9	81	88	3	233	26	15	28	29	1.96
35715224--35715404	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35720130--35720302	46	3.7	46	76	10	190	24	21	25	28	1.99
35720127--35720297	93	1.8	93	92	0	288	23	21	26	28	1.99
35722974--35723006	16	2.1	16	94	0	57	48	18	3	30	1.63
35734294--35734402	37	2.9	37	94	0	182	27	31	18	22	1.97
35734548--35734684	50	2.8	49	87	6	215	30	26	7	35	1.84
35734548--35734783	47	4.9	50	81	11	210	28	27	9	34	1.88
35734654--35734847	47	4.1	47	90	0	289	26	29	10	32	1.90
35734747--35734818	22	3.1	22	64	24	58	23	29	13	33	1.93
35734607--35734847	94	2.5	93	85	4	297	27	29	10	33	1.90
35738686--35738922	47	5.0	47	86	4	321	33	10	29	25	1.90
35738901--35739037	46	3.0	46	87	0	193	35	8	31	25	1.85
35740533--35740886	40	8.9	40	93	0	600	22	22	27	27	1.99
35741053--35741108	25	2.2	25	84	6	78	32	12	28	26	1.93
35745031--35745319	47	6.1	47	87	3	371	32	10	30	26	1.89
35745141--35745212	22	3.0	25	62	25	64	29	11	31	27	1.91
35745293--35745429	46	3.0	46	89	0	202	35	7	31	26	1.84
35748511--35748555	20	2.2	20	88	0	63	48	0	13	37	1.42
35756927--35756970	23	1.9	23	85	0	61	22	18	20	38	1.93
35763851--35763911	28	2.2	28	78	0	68	32	21	18	27	1.96
35768451--35768674	40	5.6	40	84	3	270	25	23	25	25	2.00
35768456--35768674	83	2.7	79	87	5	280	24	23	26	25	2.00
35779444--35779507	26	2.4	27	92	2	103	35	25	10	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35779611--35779722	27	4.2	27	86	3	138	22	23	16	37	1.94
35779610--35779722	54	2.1	53	86	4	156	22	23	16	38	1.93
35782974--35783047	34	2.2	34	92	4	123	28	22	24	24	2.00
35782993--35783073	34	2.4	34	85	0	99	29	24	24	20	1.99
35791396--35791466	32	2.2	32	92	0	115	19	32	9	38	1.85
35791932--35792138	53	3.8	53	78	3	216	19	23	18	38	1.93
35792472--35792528	30	1.9	30	85	0	78	31	21	8	38	1.84
35793073--35793148	37	2.1	37	100	0	152	32	18	7	40	1.79
35793937--35794184	123	2.0	122	94	0	433	39	16	11	33	1.84
35816465--35816577	40	2.8	40	78	8	122	30	15	25	29	1.95
35825403--35825446	21	2.1	22	84	16	58	25	6	15	52	1.68
35826548--35826775	54	4.2	52	83	8	260	28	20	16	34	1.94
35826569--35826773	80	2.5	81	82	7	247	26	20	17	34	1.95
35826568--35826772	107	1.9	107	86	2	295	26	20	17	35	1.95
35826548--35826773	27	8.4	27	82	1	229	27	20	16	34	1.95
35826814--35827072	132	2.0	132	92	0	437	29	28	19	21	1.98
35832776--35832887	39	2.9	39	97	0	206	24	28	19	27	1.99
35854337--35854511	40	4.5	39	81	7	178	24	20	29	25	1.99
35854290--35854511	80	2.8	77	81	6	225	24	21	28	25	1.99
35854370--35854544	76	2.3	79	80	7	180	24	21	29	24	1.99
35857958--35858078	46	2.6	48	86	2	156	28	18	29	23	1.98
35857961--35858270	49	6.5	49	75	7	212	26	18	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35857952--35858270	142	2.2	139	83	6	392	26	17	29	26	1.98
35861719--35861836	43	2.7	43	80	7	150	29	27	17	25	1.98
35868397--35868422	7	3.7	7	100	0	52	15	15	11	57	1.65
35868417--35868460	21	2.0	22	86	4	63	31	22	0	45	1.53
35868624--35868753	43	3.0	44	80	8	133	33	26	16	24	1.96
35870714--35870787	27	2.7	27	82	0	94	36	16	12	35	1.86
35870768--35870870	27	3.8	26	75	14	93	39	17	16	26	1.90
35875276--35875577	47	6.4	47	91	4	416	32	9	31	27	1.88
35875287--35875556	139	1.9	142	89	4	422	30	10	32	27	1.90
35875285--35875556	92	2.9	92	90	5	438	30	10	31	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349