genome.fa.s1.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  103  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32212818--32212857	20	2.0	20	85	0	53	37	22	0	40	1.54
32212930--32212974	23	1.9	24	86	4	65	22	22	11	44	1.84
32213040--32213226	55	3.5	53	74	10	155	21	24	18	35	1.96
32215715--32215745	16	1.9	16	93	0	53	41	12	25	19	1.87
32215958--32216016	29	2.1	28	90	3	91	28	11	27	32	1.92
32218768--32218798	3	10.3	3	100	0	62	32	0	0	67	0.91
32218967--32219041	15	5.2	14	74	14	55	74	4	18	2	1.09
32218967--32219041	26	2.8	26	75	4	69	74	4	18	2	1.09
32220165--32220214	26	1.9	26	84	8	66	48	0	18	34	1.48
32222645--32222772	49	2.6	49	81	9	136	21	27	21	28	1.99
32222766--32222963	48	4.2	48	73	17	157	22	27	17	31	1.97
32222787--32222963	46	3.8	47	78	9	177	23	28	18	30	1.97
32237623--32237647	13	1.9	13	100	0	50	76	8	0	16	1.02
32237759--32237795	18	2.1	18	90	5	58	10	5	18	64	1.43
32237764--32237801	18	2.1	18	85	9	51	7	7	18	65	1.43
32238418--32238542	44	2.8	43	80	8	135	43	13	19	24	1.87
32240188--32240259	35	2.1	35	100	0	144	37	16	16	29	1.91
32246835--32246867	16	2.0	17	88	5	50	42	12	15	30	1.83
32250094--32250136	17	2.5	17	81	11	52	67	2	4	25	1.22
32250521--32250578	30	1.9	30	92	0	98	17	39	24	18	1.92
32257501--32257821	162	2.0	162	98	0	615	25	11	16	46	1.81
32263119--32263171	18	2.9	18	75	10	54	24	1	5	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32263226--32263270	18	2.6	17	82	3	54	31	0	6	62	1.21
32263492--32263519	13	2.2	13	100	0	56	39	7	0	53	1.28
32263545--32263600	26	2.2	26	100	0	112	33	7	10	48	1.65
32265168--32265208	14	2.7	15	82	17	50	58	7	0	34	1.26
32265641--32265713	9	7.9	9	72	15	51	50	1	2	45	1.24
32265647--32265713	28	2.4	28	80	14	86	53	1	1	43	1.19
32270013--32270049	19	1.9	19	89	10	58	43	0	10	45	1.39
32270011--32270063	20	2.6	19	79	8	61	47	0	7	45	1.31
32273754--32273929	88	2.0	88	87	0	253	30	19	23	27	1.98
32279041--32279248	100	2.1	100	98	0	398	32	12	12	42	1.80
32279396--32279446	22	2.3	23	89	3	77	41	0	13	45	1.44
32292911--32292962	24	2.2	24	92	0	86	51	7	3	36	1.49
32297922--32297959	17	2.2	17	90	0	58	52	18	5	23	1.65
32301141--32301179	20	2.0	20	84	0	51	38	17	33	10	1.84
32306125--32306160	18	1.9	18	88	5	54	16	25	0	58	1.38
32306124--32306161	13	3.1	12	85	14	51	15	23	0	60	1.35
32310989--32311023	17	2.0	18	88	5	54	14	40	28	17	1.88
32324299--32324361	29	2.2	29	88	5	92	23	15	31	28	1.96
32328138--32328204	29	2.3	28	80	7	80	29	14	26	28	1.96
32331990--32332056	29	2.3	29	94	2	118	26	11	29	31	1.92
32333353--32333385	18	1.9	17	88	11	50	45	12	15	27	1.81
32333709--32334103	198	2.0	199	95	0	711	34	22	13	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32338517--32338688	93	1.8	93	87	2	256	30	25	20	23	1.98
32346580--32346758	85	2.1	85	98	0	349	38	8	27	25	1.85
32347926--32348108	79	2.3	81	84	7	232	24	22	27	25	2.00
32347927--32348110	40	4.6	40	83	9	216	23	22	28	25	2.00
32347979--32348143	79	2.1	79	84	6	210	25	21	27	25	1.99
32354042--32354220	85	2.1	85	98	0	349	37	8	27	25	1.85
32355385--32355567	79	2.3	81	84	7	232	24	22	27	25	2.00
32355386--32355569	40	4.6	40	83	9	216	23	22	28	25	2.00
32355438--32355602	79	2.1	79	84	6	210	25	21	27	25	1.99
32358233--32358426	47	4.1	47	90	0	280	32	10	29	26	1.90
32358280--32358358	25	3.3	25	65	22	69	30	10	30	29	1.90
32358262--32358333	22	3.1	22	64	24	58	31	13	30	23	1.94
32358307--32358382	23	3.2	25	62	24	63	28	13	34	23	1.92
32358397--32358532	50	2.8	48	85	8	202	36	6	27	30	1.82
32358396--32358532	48	2.8	49	84	8	190	35	6	27	30	1.82
32358678--32358786	37	2.9	37	91	0	173	24	19	29	26	1.98
32362809--32362965	29	5.5	29	89	3	221	33	26	12	28	1.92
32362809--32362965	57	2.7	58	89	3	221	33	26	12	28	1.92
32370727--32370883	29	5.5	29	89	3	221	33	26	12	28	1.92
32370727--32370883	57	2.7	58	89	3	221	33	26	12	28	1.92
32373726--32373880	42	3.7	42	82	6	170	31	25	14	28	1.95
32381486--32381744	47	5.6	47	75	13	180	29	18	30	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32388520--32388781	47	5.6	45	75	9	201	29	18	28	23	1.98
32388527--32388781	140	1.8	140	80	6	311	28	18	29	23	1.98
32397632--32397732	50	2.0	50	94	0	175	33	26	13	25	1.94
32397691--32397811	37	3.3	36	80	6	127	34	26	15	23	1.95
32405521--32405697	40	4.4	40	83	4	225	25	27	22	24	2.00
32405521--32405697	80	2.2	79	87	6	250	25	27	22	24	2.00
32420124--32420165	21	2.0	21	81	9	50	19	38	16	26	1.92
32431732--32431857	63	2.0	63	100	0	252	39	26	15	17	1.90
32435936--32436014	6	12.8	6	70	15	54	48	12	18	20	1.81
32435948--32436014	25	2.7	25	85	0	89	46	13	19	20	1.83
32436370--32436435	22	3.0	22	76	8	71	33	22	24	19	1.97
32436690--32436720	16	1.9	16	93	0	53	35	16	19	29	1.93
32436862--32437383	27	19.3	27	81	5	479	24	19	17	37	1.94
32436866--32437374	54	9.4	54	82	2	558	24	20	17	37	1.94
32436862--32437381	81	6.4	81	83	5	604	25	19	17	37	1.94
32437413--32437917	27	18.9	27	79	8	421	32	9	19	38	1.84
32437413--32437917	53	9.4	54	80	5	510	32	9	19	38	1.84
32437413--32437917	80	6.3	81	81	6	510	32	9	19	38	1.84
32437484--32437917	134	3.3	132	84	5	351	32	10	18	38	1.84
32439883--32439949	25	2.7	25	83	0	80	47	10	19	22	1.79
32440067--32440146	26	3.0	26	85	3	106	40	22	21	16	1.91
32440801--32441282	27	17.9	27	84	4	544	24	21	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32440801--32441282	54	9.0	54	85	1	610	24	21	17	36	1.94
32440816--32441281	81	5.8	81	88	1	614	23	21	17	37	1.94
32441273--32441696	27	15.8	26	75	9	309	31	9	19	38	1.84
32441338--32441717	27	14.2	27	80	7	400	30	10	20	39	1.85
32441338--32441717	53	7.1	53	83	3	440	30	10	20	39	1.85
32441319--32441717	214	1.9	214	88	2	613	30	9	20	39	1.85
32442589--32442631	21	2.1	21	86	4	61	51	20	0	27	1.48
32447587--32447663	26	3.0	26	90	0	109	32	15	12	38	1.86
32451549--32451718	46	3.7	45	77	17	170	26	19	31	22	1.98
32451548--32451806	140	1.8	140	83	5	344	27	17	30	24	1.97
32462810--32462834	12	2.1	12	100	0	50	56	20	8	16	1.65
32470877--32470901	12	2.1	12	100	0	50	56	20	8	16	1.65
32477331--32477397	33	2.0	33	97	0	125	40	34	7	17	1.78
32490334--32490372	13	2.9	13	84	3	51	28	2	10	58	1.44
32491812--32491977	40	4.2	40	88	2	237	23	22	27	25	2.00
32491812--32491977	80	2.1	79	91	1	269	23	22	27	25	2.00
32497252--32497430	46	3.9	46	89	2	261	24	31	8	35	1.86
32497451--32497526	22	3.3	22	66	28	59	25	28	11	34	1.91
32497408--32497786	47	8.1	47	90	0	526	26	28	10	34	1.89
32497473--32497548	25	3.2	25	66	17	70	30	26	9	34	1.87
32504420--32504445	6	4.3	6	100	0	52	0	15	0	84	0.62
32506349--32506570	41	5.6	40	83	3	225	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32508904--32508937	16	2.1	17	88	5	52	11	0	11	76	1.02
32517846--32517990	40	3.6	40	85	4	193	25	24	26	23	2.00
32525645--32525696	25	2.1	25	100	0	104	48	5	11	34	1.63
32526776--32526908	66	2.0	66	98	0	257	29	13	13	43	1.82
32529753--32529928	46	3.8	45	77	7	192	21	19	29	29	1.98
32532854--32532903	15	3.4	15	86	2	66	10	18	12	60	1.59
32544528--32544570	22	2.0	22	90	0	68	23	11	18	46	1.82
32549290--32549381	42	2.2	42	84	3	114	22	32	18	26	1.97
32555291--32555333	20	2.2	20	95	0	77	25	9	11	53	1.67
32555562--32555636	23	3.0	23	75	12	78	40	4	1	54	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349