genome.fa.s1.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  147  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46886696--46886734	16	2.4	17	87	12	55	12	5	33	48	1.63
46889631--46889734	29	3.7	29	83	7	124	27	28	15	27	1.96
46889611--46889719	58	1.9	57	84	1	146	26	29	16	27	1.97
46889944--46889986	16	2.7	16	88	0	68	9	23	18	48	1.76
46891430--46891553	49	2.5	49	80	2	142	31	20	25	21	1.98
46897632--46897807	46	3.8	46	75	7	167	23	21	26	29	1.99
46904565--46904603	17	2.2	18	86	4	53	53	5	0	41	1.23
46908160--46908185	13	2.0	13	100	0	52	46	0	0	53	1.00
46908758--46908800	12	3.4	12	78	12	50	72	4	0	23	1.04
46908913--46908968	30	1.9	28	89	7	85	55	0	0	44	0.99
46911810--46911861	23	2.3	22	75	21	54	9	23	1	65	1.32
46911819--46911873	12	4.6	12	73	15	51	12	23	0	63	1.29
46918879--46919134	55	4.8	53	78	8	227	36	16	24	22	1.94
46919208--46919252	23	1.9	24	86	4	65	44	11	22	22	1.84
46919331--46919361	16	1.9	16	93	0	53	41	0	22	35	1.54
46925050--46925169	57	2.1	58	85	4	163	48	8	16	26	1.75
46925158--46925183	13	2.0	13	100	0	52	69	0	15	15	1.20
46925084--46925196	57	2.0	57	84	6	149	49	7	15	26	1.72
46926370--46926396	13	2.1	13	100	0	54	33	14	7	44	1.73
46930136--46930247	58	1.9	59	92	1	190	31	8	7	53	1.57
46930907--46931607	364	1.9	364	97	0	1330	39	12	11	37	1.79
46931561--46931626	29	2.2	29	86	5	87	48	15	13	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46932184--46932238	28	2.0	27	85	3	74	45	0	1	52	1.11
46932495--46932534	19	2.1	19	90	0	62	22	2	2	72	1.09
46932653--46932955	162	1.9	161	87	6	452	45	9	8	36	1.67
46939423--46939481	21	3.0	20	80	9	59	61	5	32	1	1.28
46939447--46939495	19	2.4	19	80	10	53	65	6	28	0	1.16
46940810--46941066	129	2.0	129	84	3	338	28	14	29	27	1.95
46945043--46945077	17	1.9	19	88	11	56	25	2	5	65	1.28
46945493--46945549	22	2.5	23	78	13	64	8	22	0	68	1.17
46945602--46945637	19	2.0	19	89	10	58	2	30	0	66	1.06
46947060--46947189	50	2.6	49	91	1	197	30	29	16	23	1.97
46947060--46947246	101	1.9	99	85	4	259	28	29	17	24	1.97
46948905--46948969	15	4.4	15	78	16	73	63	13	13	9	1.53
46948905--46948973	30	2.3	31	83	14	92	60	17	13	8	1.56
46948969--46949003	17	2.1	17	100	0	70	42	28	11	17	1.83
46951971--46952164	50	3.9	48	82	6	210	27	28	18	24	1.98
46951983--46952168	101	1.9	98	85	5	257	27	29	17	24	1.97
46959818--46960306	47	10.4	47	95	1	867	32	8	30	29	1.86
46960425--46960503	37	2.1	37	90	0	122	24	18	31	25	1.98
46961711--46961942	40	5.8	40	88	0	338	25	20	27	26	1.99
46965445--46965893	47	9.5	47	93	3	749	32	8	30	28	1.87
46965553--46965627	22	3.3	22	63	7	60	30	10	30	28	1.90
46965445--46965893	142	3.2	141	92	4	749	32	8	30	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46965445--46965893	191	2.4	189	94	2	783	32	8	30	28	1.87
46966012--46966090	37	2.1	37	90	0	122	24	18	31	25	1.98
46968409--46968545	69	2.0	69	100	0	274	30	17	22	29	1.97
46968852--46969071	47	4.7	48	77	12	210	22	30	19	27	1.98
46968848--46969071	94	2.4	93	82	8	274	22	30	19	27	1.98
46971149--46971340	40	4.8	40	92	1	226	27	27	21	23	1.99
46971120--46971339	80	2.8	80	81	4	248	28	27	20	23	1.99
46973352--46973464	59	1.9	59	92	0	190	15	30	12	42	1.83
46979835--46980064	47	4.9	47	77	10	231	21	30	18	29	1.97
46983585--46983630	20	2.3	21	82	14	62	26	17	28	28	1.98
46983625--46983785	60	2.7	61	79	9	152	27	19	25	27	1.99
46986474--46986813	129	2.6	128	84	4	407	35	19	17	27	1.94
46989515--46989647	45	3.0	45	80	5	128	27	24	18	28	1.98
46989603--46989882	89	3.3	87	78	13	323	23	24	20	32	1.98
46992819--46993003	79	2.3	81	80	8	218	25	27	22	23	2.00
46992819--46993003	40	4.7	40	82	7	216	25	27	22	23	2.00
46994137--46994256	56	2.1	56	98	0	231	22	23	9	45	1.81
47000745--47000929	40	4.7	40	83	6	225	25	27	22	24	2.00
47000712--47000929	79	2.7	81	81	8	227	25	27	21	25	1.99
47002067--47002186	56	2.1	56	96	0	222	22	24	9	44	1.82
47009677--47009921	129	1.9	130	87	0	357	36	20	16	27	1.93
47014483--47014587	31	3.4	31	86	1	140	43	12	20	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014501--47014602	31	3.3	31	87	1	134	45	10	19	24	1.82
47014502--47014618	31	3.8	31	83	1	119	46	10	17	25	1.80
47014501--47014618	61	1.9	62	84	1	157	45	10	18	25	1.81
47019812--47019925	49	2.3	49	81	3	131	16	15	34	33	1.91
47021066--47021108	22	2.0	22	85	0	59	6	23	2	67	1.27
47022346--47022433	27	3.2	27	84	7	115	14	22	25	37	1.92
47024115--47024259	50	2.9	50	91	2	229	40	17	12	29	1.86
47025568--47025605	19	2.0	20	85	15	53	39	23	0	36	1.55
47025833--47025998	47	3.6	45	77	13	169	29	28	19	22	1.98
47025834--47026002	92	1.8	92	91	2	277	29	28	19	21	1.98
47025828--47026011	46	4.0	45	70	22	125	29	29	18	22	1.97
47026421--47026480	30	2.0	30	86	0	84	33	25	5	36	1.78
47032901--47032938	19	2.0	20	85	15	53	39	23	0	36	1.55
47037930--47037979	24	2.1	24	100	0	100	46	16	16	22	1.84
47043430--47043584	27	5.7	27	80	6	161	28	29	16	25	1.96
47043410--47043585	55	3.3	54	81	5	196	28	29	15	26	1.96
47043430--47043584	82	1.9	80	84	5	204	28	29	16	25	1.96
47048482--47048521	21	1.9	21	94	0	71	25	35	20	20	1.96
47051098--47051154	20	2.4	25	72	27	61	35	0	3	61	1.13
47057099--47057280	49	3.8	49	71	14	173	26	30	17	25	1.97
47057074--47057317	93	2.6	95	84	8	275	25	29	17	27	1.97
47057148--47057366	49	4.6	49	70	12	166	24	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47057099--47057374	142	1.9	142	86	1	392	26	29	17	26	1.98
47058423--47058452	14	2.1	14	100	0	60	40	16	6	36	1.75
47058428--47058461	14	2.4	14	90	0	50	50	14	2	32	1.58
47064776--47065046	49	5.6	48	78	11	266	22	30	19	26	1.98
47064774--47065053	98	2.9	98	86	4	370	23	31	18	26	1.98
47067594--47067898	151	2.0	151	97	0	574	26	23	13	36	1.92
47073284--47073351	29	2.3	29	85	5	93	27	30	13	27	1.94
47073173--47073499	173	1.9	174	96	0	602	30	24	14	29	1.95
47073452--47073530	29	2.7	30	82	13	110	30	30	13	25	1.94
47081344--47081411	29	2.3	29	85	5	93	27	30	13	27	1.94
47081233--47081560	174	1.9	174	96	0	602	30	24	14	29	1.95
47081513--47081591	29	2.7	30	82	13	110	30	30	13	25	1.94
47091509--47091551	19	2.2	20	83	4	52	34	2	20	41	1.65
47092034--47092138	48	2.2	48	91	3	167	31	19	26	22	1.98
47092034--47092151	48	2.5	48	86	5	159	31	19	25	23	1.98
47092172--47092344	49	3.6	49	77	3	154	27	21	27	23	1.99
47092079--47092347	142	1.9	143	79	11	309	27	21	26	24	1.99
47100363--47100770	47	8.6	47	92	2	654	28	29	8	33	1.86
47100363--47100770	96	4.3	96	92	2	657	28	29	8	33	1.86
47103287--47103400	56	2.2	52	89	9	169	47	9	22	20	1.79
47104814--47104996	40	4.6	39	80	8	178	25	22	27	24	2.00
47104814--47104996	77	2.3	79	83	7	212	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47110762--47110934	56	3.1	56	91	5	298	45	9	21	23	1.81
47112359--47112543	40	4.6	39	81	5	187	24	22	27	25	2.00
47112359--47112543	79	2.3	81	84	7	227	24	22	27	25	2.00
47112412--47112576	79	2.1	79	83	6	201	26	20	27	25	1.99
47126185--47126727	48	11.3	48	96	0	978	34	5	28	30	1.81
47126872--47126970	37	2.7	37	93	0	162	25	19	30	25	1.98
47130857--47131116	27	9.7	27	81	4	285	27	15	17	38	1.91
47130857--47131116	81	3.2	81	87	2	344	27	15	17	38	1.91
47130921--47131149	54	4.3	55	77	11	174	24	16	19	39	1.91
47133730--47133989	142	1.8	145	81	5	332	27	18	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349