genome.fa.s1.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  152  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48923770--48923837	29	2.3	29	89	0	100	45	33	5	14	1.69
48925065--48925122	20	2.9	20	81	0	62	32	10	12	44	1.75
48925462--48925488	11	2.5	11	100	0	54	62	11	7	18	1.50
48929685--48929843	43	3.7	43	80	5	169	32	25	15	27	1.95
48931166--48931208	22	2.0	22	90	0	68	30	25	32	11	1.91
48931454--48931519	27	2.4	27	87	0	96	33	19	15	31	1.93
48931454--48931532	27	2.9	27	82	0	95	34	20	12	32	1.90
48932378--48932564	27	6.9	26	77	2	140	40	17	16	25	1.90
48932377--48932565	81	2.3	81	77	7	195	40	16	16	25	1.89
48932378--48932564	54	3.5	54	81	5	209	40	17	16	25	1.90
48933488--48933566	37	2.1	37	95	0	140	36	13	17	31	1.89
48939361--48939439	24	3.1	25	79	13	97	39	16	20	24	1.92
48939388--48939447	28	2.1	28	90	0	93	36	16	20	26	1.93
48939475--48939673	51	3.9	51	88	1	301	33	14	23	29	1.94
48953197--48953242	20	2.3	21	82	14	62	6	19	15	58	1.58
48963022--48963199	50	3.6	49	81	8	175	27	28	16	26	1.97
48967413--48967584	45	3.9	45	79	7	165	25	28	22	23	1.99
48967582--48967785	38	5.4	38	88	1	275	32	24	20	22	1.97
48967582--48967812	38	6.1	36	83	5	212	31	24	20	23	1.98
48968082--48968192	45	2.5	46	84	7	149	28	28	15	27	1.96
48968082--48968216	43	3.1	44	81	8	168	28	28	17	25	1.97
48973450--48973549	51	2.0	51	88	4	148	22	17	29	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48981735--48981991	40	6.4	40	93	1	376	26	28	21	23	1.99
48983271--48983449	85	2.1	85	98	0	349	37	8	27	26	1.85
48984715--48984825	47	2.4	47	100	0	222	35	7	27	30	1.84
48984715--48985370	94	6.8	94	90	4	845	33	8	29	28	1.88
48984763--48984886	61	2.0	61	100	0	248	34	6	27	31	1.82
48984810--48984839	14	2.1	14	100	0	60	36	0	26	36	1.57
48984824--48985370	47	11.6	47	93	2	798	33	9	29	27	1.88
48984715--48985349	141	4.4	141	90	5	821	33	9	29	28	1.88
48985221--48985342	22	5.3	22	62	21	61	33	11	29	25	1.91
48990142--48990302	53	3.0	55	81	6	204	20	26	18	34	1.96
49004168--49004246	37	2.1	37	88	4	115	25	30	18	25	1.98
49004365--49005280	47	19.4	47	94	1	1537	29	29	8	32	1.87
49004365--49005280	284	3.2	282	95	1	1609	29	29	8	32	1.87
49012975--49013231	40	6.5	40	89	3	351	22	22	28	26	1.99
49021138--49021360	40	5.6	40	90	1	340	21	23	27	26	1.99
49027548--49027661	18	5.5	22	72	23	72	36	2	0	60	1.11
49027577--49027677	14	7.1	14	73	22	68	34	1	0	63	1.06
49027548--49027673	39	3.2	38	77	17	109	36	2	0	61	1.09
49027569--49027668	18	5.4	18	73	18	73	36	2	0	62	1.07
49027608--49027674	23	3.0	22	81	12	75	35	0	0	64	0.94
49028140--49028197	29	2.0	29	89	0	89	34	20	6	37	1.80
49029652--49029694	20	2.1	20	86	4	59	65	0	20	13	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49030451--49030475	13	1.9	13	100	0	50	32	20	16	32	1.94
49031031--49031208	27	6.6	27	81	3	187	26	15	27	30	1.96
49031035--49031187	82	1.9	81	86	4	218	26	15	27	30	1.96
49031116--49031219	27	3.8	27	83	1	73	26	14	26	31	1.95
49036829--49036967	27	5.1	27	82	3	145	30	28	15	26	1.96
49036831--49036970	54	2.6	55	79	5	160	30	27	15	26	1.95
49040173--49040371	108	1.8	108	84	5	276	24	25	17	33	1.96
49045829--49045976	46	3.2	46	70	20	121	29	29	18	22	1.98
49053246--49053418	46	3.8	45	76	15	183	28	28	20	21	1.98
49053253--49053423	93	1.8	93	89	2	272	29	28	20	21	1.98
49053246--49053439	46	4.2	46	72	15	150	29	28	19	22	1.98
49058858--49058939	28	3.0	28	91	5	132	21	23	19	35	1.96
49058857--49058980	27	4.6	26	85	5	131	20	22	20	35	1.96
49062680--49063187	255	2.0	255	92	0	838	27	22	21	28	1.99
49081105--49081340	27	8.7	27	92	0	355	28	22	8	39	1.83
49081157--49081458	27	11.2	27	87	1	194	33	22	8	35	1.84
49081085--49081369	81	3.5	81	82	3	304	30	21	8	38	1.83
49081333--49081514	27	6.8	27	79	3	188	40	20	9	29	1.84
49081333--49081499	81	2.1	81	83	2	210	40	19	8	30	1.82
49081502--49081744	27	9.0	27	87	0	335	35	19	20	23	1.96
49081946--49082039	25	3.8	25	90	5	138	25	24	23	26	2.00
49081946--49082039	49	1.9	49	89	4	145	25	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49081946--49082075	25	5.2	24	83	8	127	29	21	23	26	1.99
49084437--49084604	27	6.2	27	88	2	239	30	22	8	38	1.84
49084435--49084604	81	2.1	81	90	2	270	31	22	8	38	1.83
49084605--49084758	27	5.8	27	80	3	161	40	22	7	29	1.80
49084747--49084990	27	9.0	27	84	0	317	35	20	20	23	1.96
49085193--49085282	25	3.6	25	90	0	135	28	24	21	25	1.99
49085218--49085300	25	3.4	25	82	11	75	30	21	21	26	1.99
49085193--49085312	50	2.4	50	80	5	118	30	23	20	25	1.99
49101723--49101764	15	2.8	15	82	13	59	57	14	11	16	1.66
49110090--49110248	41	3.9	42	77	12	159	28	28	20	22	1.99
49115403--49115580	27	6.6	27	82	7	173	28	28	15	26	1.96
49123297--49123474	27	6.6	27	84	3	205	29	28	15	26	1.96
49123318--49123473	82	1.9	81	88	3	233	29	28	15	26	1.96
49128700--49129151	47	9.6	47	91	2	692	33	8	29	29	1.86
49134046--49134106	24	2.7	23	80	12	63	65	0	9	24	1.23
49134046--49134089	22	2.0	22	86	4	61	63	0	13	22	1.29
49138855--49138965	34	3.3	34	83	2	125	37	6	20	35	1.78
49140695--49140831	57	2.4	57	80	7	145	29	23	16	30	1.96
49144463--49144580	43	2.8	43	77	5	132	24	17	27	30	1.97
49144463--49144566	42	2.5	42	82	7	113	25	18	26	28	1.98
49150682--49150801	27	4.5	26	79	12	129	28	27	16	27	1.97
49154798--49154940	27	5.3	27	81	3	162	37	17	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49154807--49154941	54	2.5	54	86	4	191	35	19	20	24	1.96
49155436--49155476	20	2.0	20	85	0	55	12	14	31	41	1.83
49155687--49155774	6	14.3	6	72	13	63	19	17	13	50	1.79
49155687--49155753	25	2.7	25	86	4	91	19	17	13	49	1.80
49158280--49158354	34	2.2	34	80	4	80	28	24	22	25	2.00
49167870--49168330	229	2.0	229	91	1	755	29	16	22	31	1.96
49172222--49172381	43	3.7	42	81	11	173	25	18	25	31	1.97
49179483--49179640	43	3.7	43	81	6	187	25	18	22	33	1.96
49179482--49179640	85	1.9	85	83	7	207	25	18	22	33	1.96
49185110--49185449	50	6.7	50	76	6	256	25	18	25	30	1.98
49185219--49185391	51	3.4	51	85	2	224	27	18	23	30	1.98
49192999--49193039	22	1.9	21	85	5	55	12	39	26	21	1.89
49195814--49196037	40	5.7	40	86	6	296	24	22	27	25	2.00
49195814--49196037	78	2.8	80	84	8	296	24	22	27	25	2.00
49203792--49204013	39	5.6	39	86	5	279	24	21	28	25	1.99
49203831--49204046	78	2.8	78	83	7	226	26	19	28	25	1.99
49209994--49210173	28	6.5	28	92	2	276	27	13	28	30	1.94
49209994--49210173	55	3.3	54	91	3	270	27	13	28	30	1.94
49209994--49210173	83	2.2	82	91	1	288	27	13	28	30	1.94
49213520--49213681	35	4.6	35	81	0	198	41	17	9	31	1.81
49216101--49216138	20	2.1	18	85	14	51	31	0	13	55	1.38
49217772--49217802	15	2.1	15	93	0	53	19	0	25	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49221774--49221886	27	4.2	28	85	3	135	35	21	22	21	1.96
49222296--49222334	8	4.9	8	93	0	69	2	23	25	48	1.63
49225596--49225663	27	2.5	28	82	2	84	36	20	23	19	1.95
49230878--49231057	35	5.1	35	80	2	191	42	18	9	29	1.81
49238139--49238300	35	4.6	35	81	0	198	41	17	9	31	1.81
49240724--49240761	20	2.1	18	85	14	51	31	0	13	55	1.38
49242392--49242422	15	2.1	15	93	0	53	19	0	25	54	1.44
49244781--49244915	27	5.0	27	86	0	171	35	18	20	25	1.95
49244774--49244916	54	2.6	54	85	0	196	36	17	19	26	1.94
49244895--49244958	27	2.4	28	78	7	69	18	18	25	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349