Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  328  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108906877--108906937
21
3.2
19
80
15
72
31
0
3
65
1.09
108907960--108907995
19
1.9
18
88
5
54
47
0
0
52
1.00
108910314--108910354
20
2.0
20
100
0
82
29
12
14
43
1.82
108914494--108914537
19
2.4
18
85
7
54
20
6
0
72
1.07
108915842--108916498
326
2.0
326
98
0
1260
26
22
16
34
1.95
108932571--108932608
17
2.2
17
86
9
51
68
0
31
0
0.90
108933421--108933455
6
5.8
6
86
0
52
20
14
14
51
1.76
108936072--108936108
17
2.2
17
95
0
65
29
5
8
56
1.51
108936622--108936930
168
1.8
167
93
2
530
28
18
19
33
1.95
108936940--108937006
30
2.2
30
89
0
107
25
32
26
14
1.95
108937565--108937641
29
2.6
28
77
18
77
22
2
3
71
1.15
108937588--108937657
7
10.1
7
70
25
51
22
1
2
72
1.05
108937586--108937645
22
2.7
23
77
15
63
25
1
1
71
1.04
108937565--108937644
41
2.0
40
82
7
99
22
2
3
71
1.14
108937561--108937662
30
3.3
29
73
20
82
21
2
3
71
1.16
108937713--108937753
12
3.5
12
83
12
50
19
9
2
68
1.29
108937788--108937854
12
5.3
12
79
10
62
8
7
2
80
0.99
108942475--108942526
27
1.9
27
84
7
70
15
3
5
75
1.14
108959080--108959113
16
2.1
17
88
5
52
17
20
14
47
1.83
108967954--108967987
16
2.1
17
88
5
52
17
20
14
47
1.83
108971402--108971448
20
2.3
20
100
0
94
36
10
19
34
1.86
108971495--108971560
25
2.6
24
86
11
80
30
24
22
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108971785--108971868
31
2.7
31
88
1
134
32
16
25
26
1.96
108973015--108973070
6
9.3
6
94
0
94
16
3
0
80
0.85
108973014--108973084
18
4.1
16
82
10
61
18
4
1
76
1.03
108976161--108976286
61
2.1
58
89
4
189
50
3
3
41
1.39
108977987--108978086
39
2.6
38
84
3
119
49
10
4
37
1.55
108979264--108979291
5
5.6
5
100
0
56
64
0
0
35
0.94
108983711--108983745
5
6.8
5
93
6
61
82
0
0
17
0.66
108985268--108985296
12
2.4
12
100
0
58
6
13
31
48
1.69
108985341--108985561
113
1.9
114
80
2
257
35
19
22
22
1.96
108986244--108986273
15
2.0
15
93
0
51
16
0
40
43
1.48
108986275--108986370
36
2.7
36
84
9
124
17
1
40
40
1.57
108986310--108986383
15
5.1
15
83
3
71
16
1
41
40
1.56
108986331--108986383
22
2.4
22
75
6
54
16
1
39
41
1.60
108986381--108986726
100
3.4
100
69
18
320
26
2
27
44
1.65
108986403--108986889
202
2.4
201
92
3
807
26
2
27
43
1.67
108986744--108986810
28
2.4
29
82
7
77
16
1
34
47
1.56
108986779--108986831
21
2.6
21
90
3
81
22
1
33
41
1.65
108989765--108989794
14
2.2
13
94
5
51
50
0
13
36
1.42
108990461--108990570
17
6.5
15
77
20
78
37
10
14
37
1.81
108990459--108990584
35
3.5
36
85
11
186
37
11
14
37
1.81
108990459--108990584
54
2.3
54
97
0
243
37
11
14
37
1.81
108990459--108990584
19
6.9
19
87
10
201
37
11
14
37
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108990459--108990607
19
7.8
22
85
11
94
36
10
14
38
1.80
108993475--108993504
15
2.0
15
93
0
51
46
16
0
36
1.47
108993462--108993793
30
10.4
33
68
18
177
45
15
3
36
1.62
108993462--108993615
64
2.5
64
87
3
215
44
15
3
36
1.63
108993565--108993636
21
3.2
21
72
14
72
47
13
4
34
1.63
108993542--108993713
46
3.6
46
83
7
227
45
14
4
35
1.66
108993467--108993793
113
2.9
113
81
9
400
45
14
3
36
1.62
108993683--108993808
16
7.9
16
78
7
130
46
16
3
33
1.63
108993462--108993812
9
39.7
9
66
18
103
45
15
3
35
1.63
108995761--108995857
48
2.0
48
91
0
158
25
18
24
30
1.98
109000060--109000089
8
3.8
8
90
0
51
43
26
26
3
1.70
109000479--109000583
27
3.9
27
84
9
126
20
24
20
34
1.96
109002731--109002771
3
13.7
3
89
0
55
26
7
0
65
1.18
109003471--109003607
44
3.0
44
78
10
166
35
16
10
38
1.82
109020767--109020917
52
2.9
52
77
8
162
31
25
17
26
1.97
109020954--109021016
20
3.2
20
90
0
99
19
31
31
17
1.95
109021539--109021568
11
2.9
10
90
9
51
70
13
6
10
1.34
109024350--109024401
24
2.2
24
89
0
77
36
3
9
50
1.54
109028341--109028376
18
2.0
18
89
10
56
69
0
0
30
0.89
109028630--109028705
22
3.7
21
76
15
68
40
17
6
35
1.75
109028666--109028737
19
3.9
19
85
10
114
34
15
12
37
1.85
109028659--109028737
35
2.2
37
84
13
112
34
16
11
37
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109029102--109029198
45
2.2
45
84
0
131
26
29
12
30
1.93
109029212--109029505
78
3.8
78
87
2
421
25
24
17
32
1.97
109030739--109030770
16
1.9
17
93
6
57
12
6
0
81
0.87
109034569--109034746
27
6.6
27
81
3
169
29
28
15
26
1.96
109044453--109044528
22
3.7
21
76
15
68
40
17
6
35
1.75
109044482--109044579
35
2.7
37
87
12
150
35
16
10
37
1.82
109044489--109044579
19
4.9
19
92
8
161
36
15
10
37
1.83
109053254--109053333
25
3.2
25
72
19
85
25
8
11
55
1.64
109053254--109053354
50
2.0
50
98
0
193
26
8
11
52
1.67
109053277--109053354
25
3.1
25
72
20
90
26
7
12
52
1.66
109062386--109062442
27
2.1
27
83
0
69
24
22
22
29
1.99
109076883--109076915
16
2.1
16
88
5
50
45
3
15
36
1.61
109081967--109082354
194
2.0
194
98
0
749
27
16
17
39
1.90
109084560--109084619
31
1.9
32
89
3
95
38
11
31
18
1.87
109087072--109087110
20
2.0
20
94
0
69
35
0
12
51
1.40
109092705--109092743
13
3.0
13
96
0
69
58
30
0
10
1.31
109093527--109093567
21
1.9
22
85
5
57
31
24
4
39
1.76
109096113--109096169
3
18.7
3
75
10
53
61
7
3
28
1.39
109096335--109096367
12
2.8
12
90
0
57
66
0
3
30
1.06
109100314--109100387
17
4.1
17
77
16
76
27
50
1
21
1.57
109100314--109100388
39
1.9
39
91
0
123
26
49
1
22
1.58
109100917--109100949
13
2.7
12
90
9
57
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109103393--109103438
19
2.4
19
85
7
58
19
21
15
43
1.87
109106202--109106270
31
2.2
33
84
5
88
79
10
10
0
0.93
109106213--109106254
21
2.1
19
91
8
66
85
4
9
0
0.72
109106428--109106453
11
2.4
11
100
0
52
57
0
23
19
1.40
109107101--109107143
22
2.0
22
86
9
61
34
0
0
65
0.93
109107114--109107203
17
5.2
17
67
26
55
30
2
5
62
1.30
109109604--109109649
19
2.4
19
85
7
58
19
21
15
43
1.87
109112447--109112502
20
2.8
20
78
10
62
82
10
7
0
0.85
109114109--109114235
64
2.0
64
92
0
209
28
19
16
35
1.94
109114482--109114747
134
2.0
134
92
1
444
28
17
22
31
1.97
109114615--109115047
177
2.4
176
90
1
668
30
18
22
28
1.97
109114884--109115180
133
2.2
132
93
0
495
30
19
21
28
1.97
109115128--109115225
45
2.2
46
87
5
137
28
19
24
27
1.98
109115016--109115358
178
1.9
178
92
2
573
29
20
22
27
1.98
109115276--109115423
45
3.3
45
66
19
128
29
18
20
31
1.96
109115282--109115456
89
2.0
89
96
0
323
28
18
21
32
1.97
109114884--109115579
133
5.2
131
74
11
474
30
18
22
28
1.98
109115194--109115600
222
1.8
221
85
5
570
29
18
21
29
1.97
109115108--109115657
133
4.1
134
68
18
383
29
19
22
28
1.98
109119533--109119619
45
1.9
45
86
4
122
31
12
9
47
1.73
109119684--109119751
27
2.5
27
77
20
70
39
1
8
50
1.43
109123923--109123949
13
2.1
13
100
0
54
14
14
7
62
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109124022--109124073
27
1.9
27
88
0
77
23
23
34
19
1.96
109124015--109124079
27
2.4
27
81
0
76
23
21
38
16
1.93
109126093--109126299
43
4.8
43
95
0
378
24
18
33
23
1.97
109132170--109132320
9
16.9
9
81
1
169
34
2
16
46
1.61
109132171--109132330
27
6.0
27
84
1
196
36
2
15
45
1.60
109132435--109132490
15
3.8
15
76
21
64
51
0
1
46
1.11
109135061--109135241
61
3.0
61
98
0
344
55
17
7
19
1.66
109136706--109136750
13
3.6
13
82
11
67
46
0
0
53
1.00
109136699--109136759
24
2.5
24
100
0
122
42
0
0
57
0.98
109137604--109137653
25
2.0
25
84
11
66
40
26
4
30
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349