genome.fa.s1.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  139  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44706445--44706487	20	2.1	21	83	12	54	53	25	0	20	1.46
44708132--44708294	65	2.5	66	75	9	163	23	29	26	19	1.98
44711304--44711872	48	12.0	48	77	12	481	35	6	26	32	1.81
44711471--44711520	24	2.1	24	100	0	100	34	8	26	32	1.85
44711433--44711732	72	4.0	72	91	7	417	35	6	25	33	1.80
44711559--44711601	11	3.7	11	82	11	59	39	0	20	39	1.53
44711487--44711732	83	3.1	79	87	12	371	35	5	24	34	1.79
44711555--44711604	24	2.1	24	100	0	100	40	0	22	38	1.54
44711564--44711604	13	3.3	13	80	13	59	39	0	21	39	1.54
44711343--44711649	120	2.6	118	79	11	415	34	6	25	32	1.82
44711631--44711684	11	4.7	11	84	8	72	38	0	20	40	1.53
44711636--44711687	24	2.2	24	92	0	86	38	0	21	40	1.53
44711666--44711863	98	2.0	98	96	0	360	34	6	26	32	1.81
44711662--44711882	98	2.3	96	87	6	336	34	5	27	32	1.80
44712013--44712121	37	2.9	37	91	0	173	22	18	32	26	1.97
44713181--44713236	27	2.1	27	86	6	78	25	16	23	35	1.94
44714723--44714831	40	2.7	40	91	0	182	26	26	21	25	1.99
44714839--44714880	18	2.3	18	76	11	50	45	19	4	30	1.71
44716552--44716594	20	2.2	20	87	4	61	25	37	23	13	1.92
44725004--44725161	43	3.7	43	77	12	146	31	25	17	24	1.97
44726514--44726540	4	6.8	4	100	0	54	22	0	0	77	0.76
44726551--44726588	19	2.0	19	100	0	76	42	5	5	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44727910--44727945	18	2.1	18	89	5	56	27	13	13	44	1.82
44729056--44729163	28	3.9	28	76	3	83	28	30	14	25	1.95
44729239--44729275	19	2.0	19	89	5	58	16	40	16	27	1.89
44731636--44731807	93	1.8	93	91	0	281	24	21	26	27	1.99
44734922--44734981	27	2.2	28	80	14	72	31	26	15	26	1.95
44736799--44736861	25	2.5	25	80	14	76	30	23	20	25	1.99
44737715--44737745	15	2.1	15	100	0	62	32	0	16	51	1.44
44744513--44744587	25	3.1	25	71	17	68	29	20	18	32	1.96
44744570--44744648	25	3.2	25	78	10	90	31	16	25	26	1.96
44749671--44749843	46	3.7	46	78	13	210	21	21	27	28	1.99
44749668--44749838	93	1.8	93	96	0	315	21	21	28	28	1.99
44753425--44753452	10	2.8	10	100	0	56	32	17	17	32	1.94
44755244--44755287	23	1.9	23	86	9	63	54	9	25	11	1.65
44765664--44765841	40	4.5	40	89	2	252	24	27	22	25	2.00
44769448--44769619	93	1.8	93	92	0	290	28	29	20	20	1.98
44769449--44769616	46	3.6	45	79	13	189	29	29	20	20	1.98
44776289--44776464	46	3.8	46	76	7	185	21	21	28	28	1.98
44776286--44776456	93	1.8	93	92	0	288	21	21	28	28	1.99
44782351--44782384	18	1.9	18	88	5	52	29	14	14	41	1.86
44785990--44786052	28	2.2	29	88	2	101	28	31	14	25	1.95
44786267--44786309	16	2.6	18	82	17	58	11	18	18	51	1.76
44796004--44796082	37	2.1	37	88	4	115	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44796201--44796709	47	10.8	47	95	0	901	29	29	8	32	1.88
44796201--44796709	237	2.2	235	95	0	901	29	29	8	32	1.88
44798114--44798192	37	2.1	37	90	0	122	25	31	18	24	1.98
44798309--44798816	47	10.8	47	96	1	919	29	30	8	32	1.87
44798309--44798816	140	3.6	141	97	0	919	29	30	8	32	1.87
44800670--44800789	56	2.1	56	96	0	222	23	23	9	44	1.82
44801439--44801529	44	2.1	44	93	0	155	39	4	16	39	1.69
44804388--44804646	46	5.5	47	69	18	164	28	17	29	23	1.97
44805490--44805573	42	2.0	42	92	0	141	14	25	35	25	1.93
44815701--44815800	46	2.2	44	85	7	139	27	17	31	25	1.97
44827108--44827222	43	2.7	43	77	10	119	32	26	19	22	1.97
44834048--44834100	25	2.2	25	83	12	67	43	24	0	32	1.55
44835906--44836116	50	4.2	50	78	4	201	30	12	17	39	1.86
44835928--44836116	100	1.9	100	84	2	254	30	11	17	40	1.85
44838259--44838497	64	3.6	65	83	6	209	24	28	15	31	1.95
44838319--44838462	64	2.2	64	92	0	234	27	29	14	29	1.95
44838995--44839051	29	2.0	29	86	6	80	29	24	7	38	1.82
44840814--44840901	42	2.0	43	80	8	99	34	27	17	21	1.95
44843172--44843207	17	2.1	17	89	0	54	69	0	13	16	1.19
44845333--44845462	47	2.8	47	87	0	170	22	15	28	33	1.94
44845330--44845481	47	3.2	48	74	15	138	23	15	26	34	1.94
44846420--44846461	21	2.0	21	86	9	59	35	21	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44849158--44849229	37	1.9	37	94	5	128	31	23	11	33	1.90
44857590--44857832	49	4.9	50	77	4	224	26	19	25	28	1.99
44863331--44863433	42	2.4	43	79	6	120	30	18	17	33	1.94
44870691--44870787	38	2.6	38	88	0	131	22	25	25	25	2.00
44870703--44870798	38	2.5	38	84	0	111	23	21	26	28	1.99
44870791--44870902	43	2.6	43	97	0	206	9	25	33	31	1.88
44876782--44876849	14	4.7	15	78	12	70	58	17	16	7	1.59
44876782--44876849	29	2.3	30	82	9	88	58	17	16	7	1.59
44876794--44876849	15	3.8	15	79	9	62	57	17	16	8	1.64
44879846--44880069	49	4.5	49	88	3	306	29	27	18	25	1.98
44879846--44880069	48	4.5	48	88	3	304	29	27	18	25	1.98
44882202--44882269	14	4.7	15	78	12	70	58	17	16	7	1.59
44882202--44882269	29	2.3	30	82	9	88	58	17	16	7	1.59
44882214--44882269	15	3.8	15	79	9	62	57	17	16	8	1.64
44885255--44885491	49	4.8	49	86	3	296	29	27	17	25	1.97
44887395--44887434	20	2.0	20	85	9	55	40	15	7	37	1.75
44891990--44892091	42	2.4	43	77	6	109	30	20	17	31	1.96
44891979--44892128	43	3.5	43	73	8	110	29	23	19	28	1.98
44896229--44896361	51	2.6	50	86	3	169	25	18	25	30	1.98
44896226--44896409	50	3.7	51	81	5	198	25	17	26	29	1.98
44904976--44905104	49	2.7	49	80	4	147	25	30	18	25	1.98
44909580--44909677	22	4.3	23	76	14	80	36	17	25	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44909617--44909678	22	2.7	24	82	12	85	37	16	27	19	1.93
44909617--44909688	23	3.2	23	80	7	85	34	16	29	19	1.94
44916605--44916858	129	2.0	129	79	4	280	27	26	22	24	2.00
44918042--44918101	30	2.0	30	90	0	93	38	8	25	28	1.84
44920667--44920711	24	1.9	23	82	13	56	40	6	20	33	1.78
44929990--44930068	29	2.7	29	86	5	106	27	32	15	24	1.95
44938093--44938171	29	2.7	29	86	5	106	27	32	15	24	1.95
44967817--44967985	39	4.3	39	86	5	191	26	27	20	25	1.99
44971816--44971923	56	1.9	56	85	10	150	26	15	27	29	1.96
44976566--44976931	47	7.7	47	94	0	606	32	8	29	29	1.87
44979085--44979122	19	2.0	20	85	15	53	39	23	0	36	1.55
44979350--44979471	46	2.7	46	92	0	199	31	27	18	21	1.97
44987495--44987652	42	3.7	42	79	8	160	29	24	15	31	1.95
44998082--44998125	23	1.9	23	85	0	61	25	22	18	34	1.96
45000128--45000446	49	6.7	46	75	8	221	27	21	29	21	1.99
45001185--45001309	54	2.3	55	87	1	180	22	19	30	28	1.98
45010650--45010692	16	2.7	15	78	7	50	44	6	0	48	1.29
45013582--45013656	38	2.0	38	89	0	114	22	21	26	29	1.99
45013654--45013821	43	3.9	43	83	3	212	15	22	30	30	1.95
45016412--45016585	46	3.8	46	79	13	205	28	29	21	20	1.98
45016420--45016590	92	1.8	93	93	1	299	28	30	21	19	1.98
45018961--45019049	30	3.0	30	80	8	101	57	15	16	10	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45018961--45019040	15	5.4	15	80	7	92	58	13	17	10	1.62
45018972--45019049	15	5.2	15	78	9	79	56	15	16	11	1.67
45022808--45022985	27	6.6	27	80	7	164	28	28	16	26	1.97
45025549--45025615	28	2.5	26	79	11	80	35	23	7	32	1.83
45027742--45027904	41	4.0	41	94	0	263	25	30	20	23	1.98
45028151--45028526	27	14.0	27	80	6	248	28	10	20	40	1.85
45028131--45028516	54	7.2	53	76	7	280	29	10	20	39	1.86
45028480--45028577	27	3.7	27	82	6	112	31	15	19	33	1.93
45028715--45028781	32	2.1	32	100	0	134	26	46	14	11	1.80
45035677--45035705	15	2.0	15	93	6	51	55	20	13	10	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349