Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  200  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64449031--64449117
29
3.0
30
81
9
99
10
16
16
57
1.65
64451489--64451664
46
3.8
45
76
12
187
21
20
28
29
1.98
64451485--64451656
93
1.8
93
92
0
290
21
20
29
28
1.98
64453160--64453206
20
2.3
20
85
0
67
21
12
36
29
1.91
64456051--64456226
46
3.8
45
76
12
178
19
21
30
28
1.97
64456047--64456219
93
1.9
93
91
0
283
19
21
31
27
1.97
64468967--64469064
30
3.3
31
71
7
103
27
26
15
30
1.96
64473352--64473392
17
2.4
18
80
8
50
14
24
4
56
1.58
64473323--64473376
24
2.2
25
78
15
60
11
22
3
62
1.43
64478819--64478857
12
3.2
13
85
10
55
74
7
5
12
1.20
64479792--64479862
37
1.9
37
86
11
101
76
0
18
5
0.98
64479802--64479851
6
8.2
6
83
14
50
76
0
20
4
0.95
64479806--64479864
27
2.5
23
75
21
59
76
0
18
5
0.97
64479912--64479942
12
2.6
12
100
0
62
45
12
16
25
1.83
64481503--64481590
30
2.9
30
74
0
104
28
27
15
28
1.96
64483307--64483342
11
3.2
11
92
4
54
72
5
5
16
1.23
64484269--64484339
37
1.9
37
86
11
101
76
2
18
2
1.04
64484279--64484328
6
8.2
6
83
14
50
76
2
20
2
0.99
64484389--64484419
12
2.6
12
100
0
62
45
12
16
25
1.83
64486599--64486694
30
3.2
30
75
4
106
28
27
15
29
1.96
64494598--64494626
13
2.2
13
100
0
58
62
10
0
27
1.28
64500950--64500996
20
2.3
20
81
0
58
23
12
34
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64502655--64502730
18
4.6
18
66
24
58
14
23
1
60
1.42
64505313--64505359
20
2.3
20
81
0
58
23
12
34
29
1.92
64505780--64505876
30
3.2
30
75
2
106
28
15
26
28
1.96
64513675--64513703
13
2.2
13
100
0
58
62
10
0
27
1.28
64513925--64513983
10
5.8
10
80
4
55
40
18
22
18
1.91
64513928--64513983
21
2.7
21
83
2
69
39
19
23
17
1.92
64516907--64516937
16
1.9
16
93
0
53
51
22
6
19
1.69
64518040--64518090
16
3.2
16
82
0
57
47
15
23
13
1.82
64518301--64518384
29
3.0
28
78
3
96
28
13
29
28
1.94
64526593--64526628
6
6.0
6
93
0
54
38
27
0
33
1.57
64526636--64526679
20
2.2
20
84
8
54
9
27
0
63
1.24
64526617--64526682
27
2.5
27
82
2
80
15
25
0
59
1.37
64527484--64527551
29
2.3
30
90
5
104
10
10
2
76
1.12
64527596--64527641
13
3.5
13
87
0
74
15
2
4
78
1.01
64527596--64527652
13
4.7
12
83
10
62
15
1
3
78
0.96
64527591--64527641
26
2.0
26
96
0
93
19
5
3
70
1.24
64529735--64529781
20
2.3
20
85
0
67
21
12
36
29
1.91
64531448--64531553
48
2.2
48
85
9
137
14
24
1
59
1.45
64532569--64532626
21
2.7
21
78
7
55
5
15
5
74
1.18
64534152--64534198
20
2.3
20
85
0
67
21
12
36
29
1.91
64534866--64534898
12
2.8
12
86
4
50
36
3
9
51
1.49
64959305--64959401
30
3.2
30
68
8
81
27
28
14
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64961314--64961391
21
3.4
23
74
8
70
26
2
30
39
1.70
64961350--64961416
21
3.1
21
82
4
80
29
2
32
34
1.73
64963615--64963651
19
1.9
19
89
10
58
10
13
29
45
1.77
64964943--64964970
4
7.0
4
100
0
56
25
0
0
75
0.81
64968685--64968711
4
6.8
4
100
0
54
22
0
0
77
0.76
64971393--64971426
15
2.3
15
89
0
50
35
29
32
2
1.73
64983925--64983984
29
2.1
29
93
0
102
41
30
0
28
1.56
64983931--64983978
15
3.3
15
73
5
53
43
27
0
29
1.55
64984196--64984236
12
3.3
12
82
3
55
78
4
4
12
1.07
64988302--64988354
23
2.4
22
76
20
56
9
18
1
69
1.25
64990290--64990351
28
2.3
27
84
15
83
66
6
16
11
1.43
64991987--64992036
18
2.8
18
87
0
73
58
0
28
14
1.37
64991980--64992061
24
3.4
24
79
0
92
59
0
28
12
1.33
64994513--64994557
14
3.3
14
78
6
56
35
0
15
48
1.45
64995532--64995591
29
2.1
29
93
0
102
41
30
0
28
1.56
64995538--64995585
15
3.3
15
73
5
53
43
27
0
29
1.55
64997637--64997690
20
2.7
20
82
0
63
24
20
18
37
1.94
64997637--64997710
30
2.5
30
86
8
98
21
20
18
39
1.93
64997637--64997701
20
3.2
20
71
16
53
23
21
16
38
1.93
64998254--64999449
598
2.0
598
100
0
2392
29
17
19
32
1.95
64999907--64999941
12
2.8
13
86
4
54
80
5
2
11
1.00
64999906--64999939
11
2.8
12
91
8
52
79
8
2
8
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65000894--65000925
15
2.1
16
94
5
57
71
0
21
6
1.07
65001008--65001041
18
1.9
18
88
5
52
52
2
35
8
1.47
65002307--65002360
20
2.7
20
82
0
63
24
20
18
37
1.94
65002307--65002380
30
2.5
30
86
8
98
21
20
18
39
1.93
65002307--65002371
20
3.2
20
71
16
53
23
21
16
38
1.93
65005258--65005354
30
3.2
31
73
5
101
27
28
15
27
1.96
65007156--65007184
13
2.2
13
100
0
58
62
10
0
27
1.28
65011712--65011789
21
3.4
23
74
8
70
26
2
30
39
1.70
65011748--65011814
21
3.1
21
82
4
80
29
2
32
34
1.73
65016054--65016109
17
3.2
17
74
18
51
8
12
3
75
1.17
65018321--65018357
13
2.7
14
91
8
67
16
8
0
75
1.02
65018634--65018711
21
3.4
23
74
8
70
26
2
30
39
1.70
65018670--65018736
21
3.1
21
82
4
80
29
2
32
34
1.73
65020791--65020823
12
2.8
12
86
4
50
36
3
9
51
1.49
65024108--65024132
11
2.3
11
100
0
50
44
0
8
48
1.32
65028136--65028201
21
3.0
22
84
4
71
31
4
28
34
1.78
65030460--65030517
21
2.7
21
81
2
62
68
1
24
5
1.19
65030963--65031034
20
3.7
20
79
1
83
25
26
15
33
1.95
65032815--65032851
16
2.3
16
100
0
74
83
5
0
10
0.79
65034375--65034404
16
1.9
15
93
6
51
20
3
33
43
1.68
65035293--65035347
20
2.7
19
86
10
74
27
29
14
29
1.95
65037805--65037837
12
2.8
12
86
4
50
36
3
9
51
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65039748--65039850
30
3.4
29
73
6
98
26
26
16
31
1.97
65043568--65043664
30
3.2
30
68
8
81
26
15
29
27
1.96
65043984--65044023
19
2.1
19
85
0
53
25
35
17
22
1.95
65045255--65045302
14
3.4
14
85
0
60
18
31
6
43
1.75
65045821--65045847
10
2.7
10
100
0
54
40
29
11
18
1.85
65047278--65047310
14
2.4
14
100
0
66
87
12
0
0
0.53
65051080--65051176
30
3.2
30
75
2
106
28
15
26
28
1.96
65052767--65052948
39
4.6
39
88
2
213
27
28
19
24
1.99
65052765--65052987
78
2.8
78
80
6
234
27
28
19
24
1.99
65062221--65062248
1
28.0
1
100
0
56
100
0
0
0
0.00
65066466--65066518
23
2.4
22
76
20
56
9
18
1
69
1.25
65066513--65066569
27
2.1
27
83
0
69
7
28
1
63
1.30
65068191--65068222
4
7.8
4
96
3
55
21
0
0
78
0.76
65069081--65069111
12
2.6
12
100
0
62
25
16
12
45
1.83
65069177--65069226
17
2.9
17
85
11
66
0
16
4
80
0.87
65070133--65070198
22
3.0
21
78
6
69
9
13
4
72
1.24
65071907--65072003
30
3.2
30
75
2
106
28
15
26
28
1.96
65074930--65074964
17
2.1
17
88
0
52
25
8
5
60
1.49
65082697--65082741
20
2.2
21
88
7
67
20
24
20
35
1.96
65082976--65083004
13
2.2
13
100
0
58
27
0
10
62
1.28
65083758--65083795
10
3.8
10
83
13
51
28
31
18
21
1.97
65083757--65083794
20
1.9
20
94
0
67
28
34
18
18
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65083758--65083818
20
3.0
20
83
9
63
29
27
14
27
1.95
65083768--65083814
10
4.6
10
80
15
51
31
27
14
25
1.95
65085189--65085268
13
5.6
14
77
18
76
73
5
8
12
1.22
65085189--65085308
31
4.1
26
75
22
89
70
5
10
12
1.31
65085231--65085308
31
2.6
29
81
4
93
71
6
12
8
1.29
65086220--65086261
18
2.3
18
87
0
57
71
4
16
7
1.26
65086289--65086353
33
1.9
34
81
12
80
58
1
30
9
1.39
65087956--65087993
10
3.8
10
83
13
51
28
31
18
21
1.97
65087955--65087992
20
1.9
20
94
0
67
28
34
18
18
1.95
65087956--65088016
20
3.0
20
83
9
63
29
27
14
27
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349