genome.fa.s1.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  160  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51715541--51715576	19	1.9	19	88	5	56	44	0	11	44	1.39
51715980--51716141	67	2.5	66	79	6	186	27	16	31	24	1.96
51720006--51720132	40	3.2	40	88	3	184	28	25	22	22	1.99
51722771--51722835	27	2.4	27	86	0	76	50	6	15	27	1.67
51727915--51727987	38	1.9	38	88	0	110	20	21	27	30	1.98
51727980--51728134	43	3.6	43	89	0	238	12	25	30	30	1.93
51729687--51729790	48	2.2	48	81	6	113	30	22	29	17	1.96
51733419--51733491	38	1.9	38	88	0	110	20	21	27	30	1.98
51733463--51733647	43	4.3	43	84	4	232	15	24	31	29	1.95
51738050--51738188	29	4.8	29	82	4	140	28	15	30	25	1.96
51738055--51738188	28	4.7	27	75	8	97	29	16	29	24	1.96
51741232--51741381	27	5.5	27	81	1	147	26	16	28	28	1.97
51741232--51741381	82	1.8	81	84	4	203	26	16	28	28	1.97
51741231--51741381	55	2.8	53	79	4	158	26	16	28	28	1.97
51748198--51748292	27	3.6	25	83	10	91	38	20	24	16	1.92
51748198--51748310	55	2.1	54	83	11	142	36	21	24	17	1.95
51748222--51748310	27	3.2	28	80	6	110	34	23	23	17	1.96
51749859--51749890	16	2.0	16	100	0	64	31	25	18	25	1.98
51749860--51749899	16	2.6	15	88	11	55	30	22	22	25	1.99
51754971--51755083	27	4.1	27	82	8	131	36	21	24	17	1.95
51754971--51755083	55	2.1	54	86	5	156	36	21	24	17	1.95
51762578--51762689	27	4.1	26	84	8	134	36	23	22	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51762578--51762689	55	2.1	54	86	5	154	36	23	22	17	1.95
51766346--51766479	56	2.4	56	89	0	205	31	24	15	28	1.96
51770423--51770468	20	2.3	20	85	7	58	76	2	6	15	1.09
51770443--51770526	14	6.1	13	69	15	53	72	2	3	21	1.11
51770444--51770526	27	3.0	26	72	11	69	72	2	3	21	1.12
51770497--51770529	16	2.1	16	94	5	59	75	0	0	24	0.80
51774625--51774681	30	1.9	30	85	7	80	15	28	36	19	1.92
51783538--51783612	9	7.9	9	72	11	60	77	4	2	16	1.03
51783538--51783619	23	3.5	23	74	15	69	76	3	2	17	1.03
51783582--51783619	7	5.7	7	84	12	53	76	0	0	23	0.79
51783694--51783769	14	5.1	15	71	21	52	72	1	3	22	1.09
51783694--51783739	20	2.2	20	84	11	56	76	2	2	19	1.00
51783712--51783753	17	2.5	17	80	3	50	73	0	2	23	0.94
51784511--51784644	60	2.2	63	78	9	152	29	25	17	27	1.98
51793705--51793819	42	2.8	42	80	4	108	30	11	26	31	1.91
51793718--51793819	42	2.5	42	77	7	109	31	11	27	29	1.92
51793718--51793839	42	2.9	42	74	12	106	31	11	27	30	1.91
51801456--51801583	39	3.3	38	78	3	130	25	22	18	33	1.97
51809308--51809432	39	3.2	39	84	0	178	22	26	21	29	1.99
51812315--51812387	35	2.1	35	97	0	137	32	30	10	26	1.90
51818915--51819066	67	2.3	67	79	9	166	32	15	28	23	1.95
51822559--51822601	17	2.6	17	81	3	52	41	20	4	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51823835--51823965	50	2.6	51	82	12	173	27	28	16	27	1.97
51827488--51827662	47	3.7	47	92	0	251	33	29	13	23	1.93
51835671--51835718	25	2.0	24	84	12	62	25	22	20	31	1.98
51838675--51838829	27	5.7	27	93	3	247	25	13	29	31	1.94
51838675--51838829	55	2.8	55	95	0	265	25	13	29	31	1.94
51846678--51846829	27	5.6	27	93	3	241	26	13	28	30	1.94
51846678--51846829	55	2.8	55	94	0	259	26	13	28	30	1.94
51855004--51855085	40	2.0	40	97	0	155	36	8	17	37	1.80
51855262--51855301	21	1.9	21	100	0	80	50	7	27	15	1.70
51855546--51855586	22	1.9	22	90	5	66	19	24	39	17	1.92
51870306--51870330	12	2.1	12	100	0	50	76	0	0	24	0.80
51871609--51871688	39	2.1	39	100	0	160	15	17	5	62	1.49
51873223--51873444	40	5.6	40	85	4	236	26	27	21	24	1.99
51873376--51873453	40	1.9	41	82	10	97	26	28	21	23	1.99
51881098--51881319	40	5.6	40	85	4	236	26	27	21	24	1.99
51881251--51881328	40	1.9	41	82	10	97	26	28	21	23	1.99
51885934--51886010	25	3.2	25	60	14	63	29	5	31	33	1.80
51886010--51886287	47	5.9	47	92	0	432	32	9	29	28	1.88
51885917--51886287	94	4.0	93	88	5	542	32	9	30	28	1.88
51885917--51886288	141	2.7	135	88	4	543	31	9	30	28	1.88
51886406--51886485	38	2.1	37	86	6	108	25	18	30	26	1.98
51886406--51886485	37	2.1	38	86	6	110	25	18	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51890181--51890372	40	4.8	40	78	6	176	26	22	27	24	2.00
51890234--51890398	79	2.1	79	80	6	183	27	21	26	24	1.99
51893217--51893250	17	2.0	17	88	11	52	73	0	17	8	1.08
51895207--51895277	25	2.8	25	87	4	81	14	25	5	54	1.61
51895220--51895284	25	2.6	25	83	9	87	16	24	7	50	1.71
51895340--51895378	19	2.1	19	100	0	78	25	20	25	28	1.99
51897471--51897568	46	2.3	40	79	16	108	34	15	12	37	1.85
51899841--51900000	32	5.0	32	89	0	248	33	13	10	43	1.77
51899841--51900000	64	2.5	64	93	0	275	33	13	10	43	1.77
51902017--51902444	213	2.0	213	98	0	829	37	20	15	25	1.92
51903450--51903787	180	1.9	180	89	0	523	37	10	21	31	1.86
51906588--51906632	15	3.1	14	83	6	54	15	20	13	51	1.76
51909135--51909188	27	2.0	27	88	0	81	29	14	27	27	1.95
51909774--51910102	180	1.8	181	92	2	554	38	7	19	34	1.81
51916521--51916568	21	2.2	21	85	10	62	33	14	20	31	1.93
51923441--51923581	55	2.6	54	81	2	165	41	19	19	19	1.91
51932376--51932509	6	21.8	6	73	13	103	50	13	16	19	1.77
51932376--51932500	43	2.9	44	80	7	148	50	13	16	19	1.78
51932388--51932509	37	3.3	37	73	13	124	50	13	16	19	1.79
51932628--51932687	27	2.3	26	85	2	75	35	20	25	20	1.96
51933015--51933271	27	9.5	27	85	1	309	42	6	21	29	1.78
51933015--51933362	54	6.6	53	81	6	368	41	7	21	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51933015--51933362	81	4.4	80	78	7	363	41	7	21	29	1.80
51933196--51933336	73	1.9	73	88	2	212	44	7	19	27	1.78
51933250--51933290	19	2.2	19	90	0	64	46	7	24	21	1.77
51933266--51933362	27	3.6	26	80	8	97	37	8	23	30	1.84
51933324--51933508	27	6.9	27	79	7	169	31	7	21	40	1.80
51933503--51933573	27	2.6	27	88	0	106	28	23	18	29	1.98
51937812--51937881	27	2.6	27	95	2	113	31	28	12	27	1.93
51937812--51937909	28	3.5	28	90	2	135	31	28	13	26	1.94
51945683--51945752	27	2.6	27	95	2	113	31	28	12	27	1.93
51945683--51945780	28	3.5	28	90	2	135	31	28	13	26	1.94
51950568--51950774	53	3.8	53	77	3	207	37	19	23	19	1.94
51953234--51953276	21	2.0	21	91	8	70	32	4	25	37	1.77
51956239--51956344	26	4.1	26	96	0	194	31	6	27	34	1.82
51959542--51959572	12	2.6	12	94	0	53	9	22	51	16	1.73
51962919--51963001	26	3.2	26	96	0	157	31	6	26	36	1.81
51966559--51966602	17	2.6	16	79	10	52	40	0	2	56	1.11
51966532--51966600	29	2.3	30	80	2	77	43	0	1	55	1.08
51967441--51967476	18	2.0	18	88	0	54	52	11	0	36	1.37
51979700--51979733	6	5.5	6	89	3	50	70	2	0	26	1.01
51979762--51979812	9	5.7	9	83	0	57	29	7	15	47	1.74
51979754--51979813	18	3.3	18	78	0	75	30	6	15	48	1.70
51979754--51979812	27	2.2	27	84	0	73	30	6	15	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51987921--51987978	21	2.7	23	76	17	61	29	8	0	62	1.25
51991712--51991761	21	2.4	21	82	0	55	20	28	34	18	1.95
51993358--51993421	18	3.6	18	82	0	83	29	14	17	39	1.88
51994567--51994602	18	1.9	18	88	5	54	0	36	0	63	0.94
51999173--51999229	18	3.2	17	78	11	53	40	21	12	26	1.88
51999173--51999211	17	2.2	17	86	4	51	43	23	10	23	1.84
51999301--51999364	18	3.6	18	85	4	67	35	14	15	34	1.88
52000564--52000593	15	1.9	16	93	6	53	0	20	6	73	1.05
52000626--52000659	12	2.8	12	83	16	52	52	5	0	41	1.25
52005393--52005607	47	4.6	48	75	9	158	24	28	19	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349