genome.fa.s1.2.7.7.80.10.50.1000.319.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  319  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106583217--106583281	21	3.2	21	67	20	57	41	21	24	12	1.87
106583199--106583299	39	2.6	39	91	0	157	38	23	24	12	1.90
106584764--106584811	26	1.9	24	83	8	60	60	10	4	25	1.47
106585828--106586802	180	5.5	180	89	2	1459	28	24	17	30	1.97
106585828--106586802	357	2.7	355	90	1	1490	28	24	17	30	1.97
106598110--106598166	26	2.2	25	81	9	62	26	8	5	59	1.48
106603953--106604017	21	3.2	21	65	20	57	41	20	24	13	1.88
106603935--106604035	39	2.6	39	93	0	166	38	22	24	13	1.91
106605501--106605548	26	1.9	24	83	8	60	60	10	4	25	1.47
106610746--106610770	13	1.9	13	100	0	50	68	0	32	0	0.90
106615831--106615893	24	2.5	25	82	12	76	60	6	3	30	1.37
106615858--106615899	22	1.9	22	90	0	66	61	7	2	28	1.35
106615880--106615951	27	2.6	28	73	8	67	61	4	6	27	1.41
106615837--106615978	25	5.7	25	70	16	80	57	4	7	30	1.47
106616335--106616373	16	2.4	16	86	0	51	43	28	5	23	1.75
106616536--106616589	18	3.3	18	66	28	57	20	7	50	22	1.73
106616532--106616599	30	2.3	30	97	0	127	16	5	52	25	1.65
106617083--106617122	21	1.9	21	89	0	62	30	30	10	30	1.90
106617310--106617504	104	1.9	104	84	2	266	42	15	14	28	1.86
106617491--106618049	75	7.5	72	78	9	498	34	19	15	29	1.93
106617940--106618178	129	1.9	129	95	0	433	34	19	17	29	1.94
106618058--106618207	73	2.1	73	87	0	210	32	19	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106618397--106618441	13	3.4	13	90	6	72	71	4	8	15	1.28
106618225--106618529	100	3.0	101	88	3	429	41	17	16	24	1.89
106620226--106620307	27	3.1	27	68	13	71	31	25	13	29	1.94
106620226--106620335	52	2.1	55	88	8	165	30	25	15	29	1.96
106630620--106630674	25	2.3	23	78	12	58	43	3	16	36	1.65
106630730--106630804	22	3.3	22	76	10	78	60	5	4	30	1.38
106630736--106630943	25	8.4	24	68	19	99	57	4	5	32	1.42
106630734--106630881	77	1.9	79	83	2	192	58	4	6	30	1.43
106630741--106630949	23	8.6	25	70	15	107	56	4	5	33	1.42
106631420--106631509	30	3.0	30	83	0	126	23	5	46	24	1.73
106638672--106638729	29	2.0	29	100	0	116	24	13	17	44	1.85
106645648--106645694	25	1.9	25	91	4	78	68	4	2	25	1.19
106645345--106645977	311	2.0	310	91	2	1022	45	12	16	25	1.82
106651944--106652087	43	3.4	42	84	5	182	29	23	19	27	1.98
106652506--106652545	21	1.9	21	94	0	71	12	30	20	37	1.89
106652912--106652940	13	2.1	14	93	6	51	55	10	0	34	1.34
106655910--106655944	16	2.1	17	94	5	63	68	5	0	25	1.11
106656054--106656107	16	3.8	16	70	27	57	48	3	9	38	1.53
106656288--106656434	7	20.4	7	74	10	91	48	28	0	22	1.50
106656288--106656434	22	6.8	21	72	11	91	48	28	0	22	1.50
106656285--106656435	29	5.2	29	72	10	103	49	28	0	22	1.50
106656393--106656462	14	4.9	14	70	3	50	51	22	2	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106656579--106656643	28	2.2	28	80	17	71	30	1	3	64	1.18
106656764--106657010	115	2.1	116	88	3	372	29	19	21	29	1.97
106657956--106657995	20	2.0	20	86	13	57	20	2	7	70	1.24
106660660--106660721	20	3.3	20	66	25	62	50	6	6	37	1.54
106660653--106660725	36	2.0	36	100	0	146	49	5	5	39	1.49
106661035--106661059	7	3.6	7	100	0	50	48	0	0	52	1.00
106670428--106670688	90	2.9	90	83	4	267	32	13	26	27	1.93
106670495--106670715	90	2.4	90	84	2	255	32	13	25	28	1.94
106672991--106673035	23	2.0	22	83	12	56	51	2	2	44	1.26
106674515--106674555	22	1.9	21	90	5	64	70	2	0	26	0.99
106678560--106678604	6	7.5	6	89	0	54	75	6	2	15	1.11
106678560--106678604	12	3.8	12	88	5	65	75	6	2	15	1.11
106681861--106681928	13	4.9	14	69	16	52	27	5	1	64	1.25
106681861--106682074	3	69.7	3	65	12	69	27	7	2	62	1.36
106682141--106682185	14	3.1	16	81	18	62	24	11	0	64	1.26
106682308--106682651	3	118.3	3	69	14	125	28	7	3	60	1.40
106682287--106682413	21	6.2	20	75	14	91	31	3	2	62	1.26
106682287--106682413	28	4.7	29	72	18	103	31	3	2	62	1.26
106686829--106686877	15	3.1	14	76	23	53	67	2	4	26	1.19
106687604--106687652	20	2.5	20	89	0	71	14	38	18	28	1.90
106687604--106687661	20	2.8	21	82	10	66	13	34	20	31	1.92
106690755--106690811	28	2.0	29	82	3	71	29	24	1	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106696865--106696940	40	1.9	40	86	5	109	15	13	34	36	1.87
106702531--106702568	5	7.6	5	91	8	60	81	0	0	18	0.69
106702538--106702568	9	3.3	9	95	4	53	80	0	0	19	0.71
106704767--106704835	29	2.3	29	92	2	111	53	28	4	13	1.58
106704779--106704837	29	2.0	29	100	0	118	50	28	3	16	1.61
106710920--106710966	21	2.2	22	92	3	78	21	38	19	21	1.94
106725370--106725411	22	1.9	22	90	9	68	71	0	28	0	0.86
106726418--106726451	16	2.1	17	88	5	52	32	0	2	64	1.08
106731551--106732436	147	6.1	146	86	5	1197	27	6	7	58	1.50
106732440--106732468	14	2.1	14	100	0	58	44	0	0	55	0.99
106732769--106732797	13	2.3	13	94	5	51	68	0	0	31	0.89
106732961--106733025	6	11.2	6	86	6	53	0	44	0	55	0.99
106732976--106733009	3	11.7	3	87	6	52	0	38	0	61	0.96
106733166--106733217	27	2.0	26	88	3	77	11	36	30	21	1.89
106745817--106745939	28	4.4	28	92	2	185	26	12	27	33	1.92
106745842--106745953	28	4.0	27	91	3	143	29	11	25	33	1.91
106745817--106745953	55	2.4	56	85	6	170	28	11	25	34	1.91
106753829--106753979	28	5.4	28	94	1	241	27	11	27	33	1.92
106753829--106753993	83	2.0	85	85	6	228	28	11	25	34	1.91
106758999--106759057	30	2.0	30	93	0	100	49	8	13	28	1.71
106760903--106760961	26	2.2	26	90	3	91	44	27	13	15	1.84
106770681--106770751	35	2.0	35	94	0	124	28	25	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106771520--106771566	20	2.4	19	82	7	58	0	51	2	46	1.13
106771741--106771795	28	2.0	28	82	13	69	25	7	0	67	1.16
106787949--106787978	6	5.2	6	92	8	53	16	0	0	83	0.65
106787949--106787978	11	2.6	11	94	5	51	16	0	0	83	0.65
106788978--106789014	4	9.2	4	100	0	74	51	24	0	24	1.49
106789810--106789866	30	1.9	30	92	0	96	26	35	28	10	1.89
106792514--106792554	19	2.2	19	91	4	66	17	24	2	56	1.53
106802075--106803116	48	21.5	48	74	12	648	22	19	23	34	1.97
106802486--106802794	57	5.8	57	75	16	338	21	18	25	35	1.95
106802438--106802853	105	4.1	102	88	5	578	21	17	25	35	1.95
106802757--106802833	39	2.0	39	92	0	127	22	22	22	33	1.97
106802827--106802883	30	1.9	30	100	0	114	21	3	47	28	1.67
106802876--106803134	99	2.7	95	86	4	329	23	20	20	36	1.95
106805707--106805758	24	2.2	24	85	0	68	53	9	3	32	1.51
106808262--106808345	38	2.2	39	81	10	102	27	13	17	41	1.87
106809815--106809917	51	2.0	51	98	0	197	16	25	10	47	1.78
106810878--106810912	18	1.9	18	94	0	61	34	14	14	37	1.86
106814419--106814517	50	2.0	50	100	0	198	31	16	8	44	1.76
106825489--106825561	30	2.4	30	88	0	101	27	32	24	15	1.95
106825880--106825908	14	2.1	14	100	0	58	27	20	13	37	1.91
106834286--106834348	17	3.6	17	73	4	54	9	12	3	74	1.17
106834314--106834347	6	5.5	6	92	3	50	11	2	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106843872--106843947	26	2.9	25	78	7	80	36	17	5	40	1.72
106848011--106848122	27	4.2	26	84	7	134	17	24	23	34	1.96
106848011--106848122	54	2.1	54	86	3	154	17	24	23	34	1.96
106850848--106850914	16	4.2	16	80	0	71	44	2	23	28	1.68
106851327--106851366	18	2.4	17	87	8	55	35	0	0	65	0.93
106853783--106853874	26	3.4	26	73	8	103	53	2	0	44	1.12
106853781--106853896	55	2.1	57	91	3	191	51	2	0	45	1.14
106853795--106853916	57	2.2	53	84	9	165	51	3	0	45	1.17
106857232--106857383	42	3.6	42	80	3	162	45	17	20	17	1.86
106857243--106857383	21	6.7	21	72	3	113	46	17	19	16	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349