genome.fa.s1.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  170  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54934021--54934084	22	2.9	22	81	9	85	18	21	23	35	1.95
54934348--54934428	12	6.7	12	77	8	65	18	17	13	50	1.78
54934350--54934421	6	11.8	6	76	8	74	18	18	12	51	1.76
54934325--54934409	37	2.3	37	87	0	125	20	17	12	49	1.79
54938086--54938146	30	2.0	30	83	0	77	29	22	9	37	1.87
54944556--54944799	49	4.9	48	78	8	247	27	28	18	24	1.98
54944568--54944799	100	2.3	98	82	3	277	28	28	18	24	1.98
54950765--54950798	9	3.8	9	88	0	50	38	8	11	41	1.73
54952972--54953150	46	3.9	47	81	4	220	22	21	28	27	1.99
54952971--54953142	93	1.8	93	91	2	283	22	22	29	26	1.99
54957331--54957551	40	5.6	40	85	5	279	25	21	28	24	1.99
54957334--54957584	79	3.2	78	80	9	242	26	21	27	24	1.99
54957334--54957584	119	2.1	119	81	7	278	26	21	27	24	1.99
54964686--54964807	1	122.0	1	93	0	208	0	1	0	96	0.26
54972036--54972286	39	6.7	40	82	14	245	25	22	27	24	2.00
54972088--54972286	69	2.7	76	81	15	236	25	22	28	24	1.99
54980026--54980287	39	6.7	40	87	7	337	25	22	27	24	2.00
54985603--54985674	36	2.0	35	97	2	135	50	25	2	22	1.63
54985964--54986112	44	3.5	43	74	10	133	29	24	17	28	1.97
54989298--54989515	46	4.7	44	71	13	125	31	20	25	22	1.98
54991184--54991414	48	4.8	48	86	1	311	26	31	17	24	1.97
54996272--54996320	24	2.0	24	92	0	80	24	16	32	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55001978--55002064	28	3.1	28	90	3	129	28	14	26	29	1.95
55008161--55008208	15	3.3	15	82	5	62	25	2	22	50	1.60
55021415--55021463	15	3.3	15	82	0	71	18	6	28	46	1.72
55028948--55028989	20	2.1	20	100	0	84	45	9	4	40	1.58
55037223--55037249	13	2.1	13	100	0	54	37	0	7	55	1.28
55054490--55054662	39	4.4	39	88	2	204	25	30	24	19	1.98
55054555--55054678	39	3.2	39	89	4	171	26	30	22	20	1.98
55055303--55055330	12	2.3	12	100	0	56	39	10	0	50	1.37
55056850--55056887	16	2.4	16	95	0	67	47	18	26	7	1.76
55057013--55057047	17	2.0	18	88	5	54	22	22	34	20	1.97
55057113--55057192	28	2.8	28	79	7	90	23	15	32	28	1.95
55057115--55057192	29	2.8	28	78	7	86	24	15	32	28	1.95
55066224--55066408	40	4.7	40	82	6	216	24	22	28	25	1.99
55066277--55066431	79	2.0	79	82	7	190	25	20	27	25	1.99
55068170--55068203	17	2.0	17	94	0	59	35	14	8	41	1.77
55069308--55069368	30	2.0	30	100	0	122	54	9	6	29	1.59
55069377--55069401	10	2.5	10	100	0	50	60	0	0	40	0.97
55079895--55079950	24	2.4	23	88	5	78	26	23	14	35	1.93
55095323--55095349	14	1.9	14	100	0	54	40	7	14	37	1.74
55101167--55101422	39	6.6	39	92	2	428	29	29	21	19	1.98
55107192--55107418	46	4.8	50	78	12	178	25	18	30	25	1.98
55110081--55110121	21	2.0	21	100	0	82	43	21	9	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55115400--55115591	97	2.0	97	82	7	237	26	18	27	28	1.98
55116632--55116719	42	2.1	41	93	2	149	30	19	23	26	1.98
55119619--55119661	15	2.8	15	85	3	59	23	30	23	23	1.99
55119732--55119833	29	3.5	29	78	11	93	21	27	27	23	1.99
55119782--55119834	15	3.6	15	71	5	54	24	26	26	22	2.00
55119822--55119874	27	2.0	27	84	0	70	22	22	28	26	1.99
55121770--55121939	41	4.2	40	72	18	134	27	25	22	24	2.00
55127497--55128043	40	13.7	40	93	0	898	24	27	19	27	1.99
55128350--55128409	28	2.1	28	100	0	120	16	35	10	38	1.82
55133865--55134451	40	14.7	40	92	0	951	24	27	19	28	1.99
55144079--55144260	39	4.6	39	83	8	199	24	21	28	25	1.99
55144078--55144260	40	4.6	39	81	8	201	24	21	28	25	1.99
55152075--55152256	79	2.3	80	83	8	212	24	21	28	25	1.99
55152075--55152258	40	4.6	40	81	11	209	24	21	28	25	1.99
55152128--55152291	79	2.1	77	83	7	197	26	20	28	25	1.99
55159469--55159509	21	2.0	21	90	0	64	19	29	21	29	1.98
55163079--55163129	26	2.0	26	88	3	77	60	7	0	31	1.25
55163114--55163178	35	1.9	33	84	6	85	56	3	1	38	1.24
55163539--55163567	5	5.8	5	100	0	58	17	0	0	82	0.66
55167084--55167147	26	2.5	26	78	19	71	64	7	1	26	1.30
55167458--55167497	15	2.5	16	80	12	55	17	2	0	80	0.83
55167443--55167519	25	3.1	24	73	17	68	25	3	0	70	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55169158--55169200	22	2.0	22	95	0	77	32	0	6	60	1.23
55170169--55170200	3	10.7	3	93	0	55	0	34	65	0	0.93
55176010--55176392	50	7.6	50	79	3	358	31	25	16	26	1.97
55176052--55176392	102	3.4	101	80	4	375	31	25	17	26	1.97
55180016--55180082	28	2.4	28	73	14	66	44	13	16	25	1.84
55180092--55180183	28	3.3	28	76	3	87	29	15	26	29	1.96
55180610--55180677	35	1.9	36	93	3	120	38	16	19	26	1.92
55190556--55190706	57	2.6	57	91	1	230	26	9	28	35	1.88
55190860--55190953	28	3.4	28	73	7	84	31	10	23	34	1.89
55190940--55191013	28	2.6	28	95	0	130	31	12	22	33	1.91
55193131--55193492	49	7.7	49	75	9	227	27	20	28	24	1.99
55193270--55193470	93	2.1	95	81	4	228	26	19	28	24	1.99
55199661--55199845	40	4.7	40	81	5	196	26	28	20	24	1.99
55199628--55199845	40	5.5	39	77	7	174	25	27	20	26	1.99
55207499--55207683	40	4.7	40	81	5	196	26	28	20	24	1.99
55207466--55207683	40	5.5	39	77	7	174	25	27	20	26	1.99
55215736--55215784	20	2.5	19	80	9	53	34	6	8	51	1.57
55217190--55217232	21	2.0	23	86	9	63	23	2	2	72	1.08
55217180--55217234	8	7.1	8	80	15	53	23	1	3	70	1.12
55226627--55226698	29	2.5	28	80	8	72	27	16	33	22	1.95
55226656--55226729	29	2.6	28	77	10	69	28	14	29	27	1.95
55230228--55230284	3	19.0	3	96	0	96	66	3	0	29	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55240044--55240142	28	3.7	27	82	13	132	35	14	25	25	1.93
55240167--55240364	51	3.9	51	92	1	326	32	13	24	28	1.94
55247580--55247806	48	4.7	48	88	2	305	27	30	17	24	1.97
55252898--55253075	42	4.3	42	86	2	216	35	21	19	22	1.96
55252898--55253075	82	2.1	83	83	2	214	35	21	19	22	1.96
55254216--55254271	26	2.2	26	90	3	96	32	10	25	32	1.90
55262169--55262332	39	4.2	39	88	0	220	31	20	25	22	1.98
55270199--55270364	39	4.3	39	84	0	208	33	19	25	21	1.97
55275637--55275747	27	4.1	27	88	5	154	37	21	24	16	1.93
55276931--55277001	24	3.0	24	95	0	124	25	38	1	35	1.65
55280667--55280708	12	3.5	12	83	0	57	47	4	28	19	1.69
55282905--55282943	16	2.4	16	82	4	51	69	5	7	17	1.32
55287792--55287876	25	3.4	25	78	12	77	28	22	18	30	1.97
55288027--55288088	31	2.1	30	82	17	76	43	8	17	30	1.78
55297553--55297585	17	1.9	17	88	11	50	69	0	0	30	0.88
55297553--55297586	18	1.9	17	88	5	50	70	0	0	29	0.87
55297880--55297970	19	4.9	18	86	5	121	35	14	10	39	1.81
55297882--55297970	35	2.4	37	87	9	128	35	13	11	39	1.80
55298320--55298519	45	4.5	45	84	1	249	24	27	15	34	1.94
55298334--55298502	89	1.9	89	88	0	257	26	27	14	31	1.94
55298533--55298827	78	3.8	78	87	3	416	25	23	18	32	1.97
55299951--55301304	674	2.0	674	96	0	2503	23	26	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55306513--55306584	21	3.2	24	60	28	57	29	9	26	34	1.88
55306504--55306594	44	2.1	44	97	0	173	27	9	27	35	1.88
55313316--55313455	55	2.5	55	80	6	160	35	19	25	19	1.95
55313753--55313783	16	1.9	16	93	0	53	41	0	22	35	1.54
55315214--55315270	25	2.3	25	96	0	105	3	26	33	36	1.74
55319251--55319285	18	2.0	18	88	5	54	68	0	0	31	0.90
55319552--55319595	21	2.0	21	86	8	61	38	18	6	36	1.77
55319575--55319627	17	2.9	18	80	8	72	33	15	11	39	1.83
55322836--55323017	50	3.6	50	84	1	231	28	26	18	25	1.98
55322836--55323017	101	1.8	99	87	2	274	28	26	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349