Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  316  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105442714--105442741
14
2.0
14
100
0
56
71
0
0
28
0.86
105445216--105445337
42
2.9
42
90
0
118
40
5
21
32
1.77
105448186--105448324
62
2.2
62
96
0
251
48
7
6
37
1.58
105448245--105448279
14
2.5
14
90
0
52
42
2
5
48
1.41
105455679--105455831
62
2.5
62
86
2
218
23
30
22
23
1.99
105457012--105457115
10
10.9
10
68
21
55
62
1
0
35
1.06
105456991--105457078
28
3.1
28
76
11
90
64
0
2
32
1.06
105456975--105457184
19
11.3
17
65
24
70
61
1
1
35
1.16
105457058--105457151
10
9.6
11
73
16
59
61
3
0
35
1.12
105457089--105457155
20
3.3
21
83
6
68
59
2
0
37
1.13
105457028--105457177
20
7.8
20
70
18
63
61
2
0
35
1.15
105456937--105457184
9
26.6
9
67
18
107
61
2
2
33
1.20
105457676--105457751
27
2.8
27
75
13
75
42
3
2
51
1.34
105457752--105457800
18
2.7
19
84
6
57
18
4
4
73
1.15
105457897--105457956
31
2.0
31
93
3
104
33
6
15
45
1.72
105459251--105459297
23
2.0
23
84
8
60
42
2
0
55
1.12
105462075--105462121
22
2.2
23
85
11
64
48
6
6
38
1.54
105467031--105467073
20
2.2
20
86
0
59
32
20
2
44
1.65
105476025--105476220
97
2.0
98
96
1
367
28
14
14
42
1.84
105486145--105486654
252
2.0
252
100
0
1020
26
13
17
42
1.86
105490775--105490822
20
2.3
21
75
3
53
60
0
2
37
1.09
105491914--105491967
24
2.3
24
76
20
60
35
1
3
59
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105492464--105492488
3
8.3
3
100
0
50
32
0
0
68
0.90
105494282--105494389
26
4.2
26
91
0
171
34
7
22
36
1.82
105505324--105505407
39
2.2
39
82
4
107
34
21
3
40
1.71
105514512--105514665
77
2.0
77
96
0
281
35
11
16
37
1.85
105514809--105514856
20
2.5
19
86
6
62
31
4
0
64
1.12
105517778--105517809
5
6.8
5
86
13
50
78
0
0
21
0.76
105517783--105517809
13
2.1
13
100
0
54
77
0
0
22
0.76
105526680--105526706
12
2.2
12
100
0
54
0
62
0
37
0.95
105526768--105526828
25
2.4
27
76
18
67
4
36
3
55
1.38
105529522--105529555
4
8.0
4
90
9
50
23
0
2
73
0.97
105529505--105529564
22
2.7
22
73
19
61
26
0
6
66
1.16
105531910--105531948
18
2.2
18
85
0
51
61
2
23
12
1.43
105533254--105533287
4
8.0
4
90
9
50
23
0
2
73
0.97
105533248--105533296
22
2.2
21
82
13
55
24
0
2
73
0.94
105535463--105535514
21
2.5
21
90
0
77
32
36
7
23
1.83
105541916--105542002
44
2.0
44
95
0
156
31
12
18
37
1.88
105550023--105550053
12
2.6
12
94
0
53
0
6
12
80
0.89
105561373--105561419
18
2.6
19
83
6
62
34
2
14
48
1.56
105561433--105561525
43
2.2
43
92
3
152
27
6
13
51
1.66
105566111--105566158
19
2.6
19
83
3
62
33
2
16
47
1.58
105566168--105566264
43
2.3
43
87
5
144
31
6
12
49
1.65
105568681--105568719
17
2.3
17
86
0
51
58
2
7
30
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105569737--105569788
19
2.7
19
85
14
63
38
1
3
55
1.29
105569901--105570007
56
2.0
55
87
9
157
44
20
2
31
1.66
105601833--105601913
29
2.7
29
81
9
83
34
6
9
49
1.61
105601860--105601922
29
2.1
29
85
8
83
31
9
11
47
1.71
105602304--105602370
32
2.1
32
97
0
125
47
17
11
22
1.80
105606883--105606961
20
4.0
20
74
8
63
39
26
16
17
1.91
105617810--105617843
18
1.9
17
88
5
50
50
17
0
32
1.47
105623981--105624060
42
1.9
41
89
2
124
25
17
16
41
1.89
105626389--105626421
3
11.0
3
100
0
66
66
0
0
33
0.92
105627039--105627107
9
7.6
9
72
18
54
69
2
0
27
1.02
105627039--105627107
19
3.8
17
77
12
57
69
2
0
27
1.02
105627039--105627106
27
2.5
27
83
7
75
70
2
0
26
1.01
105627163--105627250
42
2.1
43
83
10
110
35
1
4
59
1.25
105635503--105635550
2
24.0
2
100
0
96
50
0
50
0
1.00
105643551--105643602
21
2.5
21
80
0
68
34
23
25
17
1.96
105643561--105643610
21
2.3
21
89
6
73
36
26
26
12
1.91
105643571--105643622
23
2.4
22
81
9
61
32
25
25
17
1.97
105643995--105644051
15
3.9
15
90
2
89
50
12
0
36
1.40
105645320--105645399
42
1.9
42
85
10
110
55
5
0
40
1.22
105654088--105654198
40
2.8
40
86
4
145
23
26
24
26
2.00
105661464--105661508
14
3.0
15
77
9
56
24
4
17
53
1.62
105665135--105665213
35
2.3
35
79
14
92
17
24
7
50
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105665135--105665226
34
2.7
35
80
11
109
16
22
8
52
1.71
105667646--105667716
26
2.7
26
84
0
88
30
22
11
35
1.89
105678548--105678572
3
8.3
3
100
0
50
68
0
32
0
0.90
105679688--105679720
16
2.0
17
88
5
50
48
6
9
36
1.60
105681980--105682019
4
10.0
4
88
0
62
22
2
25
50
1.62
105689277--105689315
15
2.5
15
83
4
51
48
7
2
41
1.45
105689271--105689316
16
2.8
17
78
15
53
52
6
4
36
1.47
105692479--105692518
21
2.0
21
90
5
64
22
27
37
12
1.90
105693700--105693973
48
5.7
47
87
3
298
23
27
18
29
1.98
105693839--105693914
23
3.2
23
65
31
61
27
23
18
30
1.98
105693751--105693973
96
2.3
96
89
3
351
24
26
18
30
1.98
105701445--105701717
48
5.7
48
80
3
237
24
27
18
29
1.98
105713366--105713462
40
2.4
41
86
5
144
27
25
14
31
1.95
105721999--105722039
21
2.0
21
90
0
64
26
12
26
34
1.92
105722007--105722047
21
2.0
21
90
0
64
26
17
24
31
1.97
105725540--105725723
99
1.9
99
98
0
359
32
17
21
28
1.96
105730272--105730311
10
4.0
10
81
12
55
67
2
7
22
1.28
105730504--105730534
14
2.1
15
94
5
55
12
22
0
64
1.27
105735355--105735448
48
2.0
48
93
0
161
11
34
17
37
1.86
105743724--105743977
141
1.8
137
79
9
289
27
21
26
24
1.99
105745232--105745270
21
1.9
21
89
5
62
12
35
28
23
1.91
105749750--105749798
7
7.4
7
80
11
59
16
2
0
81
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105749758--105749802
19
2.4
19
92
0
72
17
2
0
80
0.82
105750793--105750976
96
1.9
97
90
1
298
29
14
23
32
1.94
105751579--105751616
13
2.8
13
88
4
58
42
0
13
44
1.43
105754568--105754595
12
2.3
12
100
0
56
21
32
46
0
1.52
105754680--105754721
21
2.0
21
85
0
57
26
19
2
52
1.58
105758637--105758679
22
2.0
22
81
9
52
30
6
4
58
1.45
105763207--105763244
15
2.4
16
87
12
53
60
5
13
21
1.52
105769961--105770006
23
2.0
22
84
12
58
50
10
2
36
1.50
105774241--105774657
138
3.1
135
89
3
599
45
5
7
41
1.57
105774633--105774781
74
2.0
76
92
2
248
32
14
8
44
1.75
105779667--105779700
17
1.9
18
88
5
52
14
5
17
61
1.52
105780406--105780570
43
3.8
43
68
17
126
25
17
26
30
1.97
105782107--105782214
56
1.9
56
88
0
162
26
13
25
34
1.93
105785596--105785703
55
2.0
55
94
1
191
23
15
27
33
1.95
105790176--105790242
33
2.0
33
97
0
125
32
11
22
32
1.90
105794584--105794828
50
4.9
49
85
6
316
23
30
19
26
1.98
105794998--105795081
29
2.9
29
96
0
159
38
21
2
38
1.67
105799851--105799875
12
2.1
12
100
0
50
40
16
0
44
1.47
105806928--105806991
30
2.1
30
82
5
76
54
3
0
42
1.16
105809588--105809767
90
2.0
90
93
0
306
36
20
5
37
1.76
105809982--105810080
24
4.0
25
71
8
69
41
17
18
23
1.90
105810978--105811036
30
2.0
30
83
3
75
27
11
27
33
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105811342--105811796
46
9.7
46
72
14
281
26
18
30
24
1.98
105811342--105811796
94
4.8
94
81
6
489
26
18
30
24
1.98
105817703--105817760
8
7.2
8
76
7
55
29
1
18
50
1.57
105817706--105817760
24
2.3
24
93
0
92
29
1
20
49
1.59
105821135--105821163
14
2.1
14
100
0
58
20
0
37
41
1.53
105822075--105822106
5
6.6
5
92
7
57
81
0
0
18
0.70
105833836--105833875
12
3.5
12
83
10
57
22
2
0
75
0.93
105833977--105834048
3
24.0
3
71
13
51
33
4
4
58
1.36
105855560--105855592
11
2.9
12
86
13
52
66
0
0
33
0.92
105856181--105856274
46
2.0
46
97
0
179
45
11
12
29
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349