genome.fa.s1.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  162  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52401970--52402024	27	2.0	27	96	0	101	12	36	30	20	1.90
52401976--52402033	27	2.1	27	87	0	80	17	41	24	17	1.90
52406627--52406930	47	6.4	47	90	3	407	33	9	30	26	1.88
52406781--52406902	22	5.3	22	62	21	61	34	11	29	24	1.91
52409139--52409203	25	2.6	25	76	9	71	33	15	27	23	1.95
52410735--52410792	24	2.6	22	80	17	59	63	0	1	34	1.04
52410830--52410876	9	5.6	9	78	14	55	25	0	2	72	0.96
52410832--52410876	8	5.5	8	87	12	65	24	0	2	73	0.95
52410787--52410877	8	10.4	9	75	16	61	30	2	2	64	1.17
52413414--52413477	16	4.0	16	66	22	53	21	0	15	62	1.32
52415116--52415143	14	2.0	14	100	0	56	42	21	0	35	1.53
52420304--52420373	27	2.6	27	83	0	86	25	27	25	21	1.99
52422359--52422428	36	1.9	36	100	0	140	17	22	28	31	1.96
52423946--52424017	34	2.1	34	84	5	92	38	5	19	36	1.75
52424089--52424223	59	2.3	61	79	10	154	33	12	24	29	1.92
52431065--52431136	34	2.1	34	84	5	92	38	5	19	36	1.75
52431206--52431343	59	2.3	61	76	8	149	32	13	26	28	1.93
52437005--52437056	27	1.9	28	84	7	72	67	5	17	9	1.38
52440788--52440853	20	3.2	20	80	2	69	37	27	22	12	1.90
52444335--52444393	20	2.8	22	82	10	77	38	28	25	6	1.81
52444460--52444528	21	3.3	21	78	15	79	21	21	28	27	1.99
52448938--52448974	19	1.9	19	89	10	58	27	0	27	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52450783--52450856	36	2.1	36	86	0	103	48	1	37	12	1.49
52455727--52455751	12	2.1	12	100	0	50	32	8	16	44	1.76
52463373--52463689	46	6.7	49	70	10	162	22	29	20	28	1.98
52466806--52467032	45	5.1	45	84	3	273	26	28	21	24	1.99
52468725--52468768	23	1.9	23	86	9	63	43	0	13	43	1.44
52473469--52473526	29	2.0	29	86	0	80	37	17	1	43	1.59
52485726--52485777	11	4.9	11	83	9	63	84	0	15	0	0.62
52487334--52487365	16	2.0	16	100	0	64	25	12	25	37	1.91
52490834--52490899	33	2.0	33	93	0	114	36	21	13	28	1.91
52491657--52492046	48	8.0	48	75	5	345	26	18	28	26	1.98
52491666--52492044	98	3.9	98	78	5	313	27	18	28	25	1.98
52491670--52492043	146	2.6	145	89	2	554	27	18	28	26	1.98
52494741--52495139	27	14.6	27	78	8	295	29	27	14	27	1.95
52494789--52495138	83	4.2	82	82	5	350	29	27	15	28	1.96
52494740--52495164	138	3.1	136	81	9	470	29	28	14	27	1.96
52500330--52500488	42	3.8	42	75	5	142	28	14	26	30	1.95
52503889--52503917	14	2.1	14	100	0	58	34	17	20	27	1.95
52518466--52518498	12	2.8	12	86	4	50	51	9	3	36	1.49
52518529--52518574	20	2.2	21	88	3	67	30	19	26	23	1.98
52519563--52519611	22	2.2	23	85	3	64	6	22	0	71	1.08
52523132--52523164	12	2.8	12	86	4	50	51	9	3	36	1.49
52526533--52526599	27	2.5	27	82	0	89	34	16	29	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52533580--52533606	3	9.0	3	100	0	54	66	0	33	0	0.92
52537435--52537484	18	2.5	21	75	21	61	52	0	0	48	1.00
52540184--52540208	6	4.2	6	100	0	50	36	32	0	32	1.58
52541673--52541711	19	2.0	20	85	5	53	0	23	5	71	1.05
52542905--52542944	13	3.1	13	96	0	71	10	7	20	62	1.50
52543640--52543848	46	4.5	46	75	10	176	28	19	28	23	1.98
52550130--52550177	20	2.4	20	78	0	51	16	31	31	20	1.95
52550416--52550458	21	2.2	21	84	15	58	44	20	4	30	1.72
52550996--52551155	52	3.1	53	82	8	184	30	26	18	25	1.98
52553955--52554163	46	4.5	46	81	7	182	27	19	29	22	1.98
52554605--52554784	46	3.9	46	73	11	152	30	17	27	24	1.97
52555127--52555441	159	2.0	160	90	0	497	25	17	17	39	1.92
52558913--52558946	18	1.9	18	94	5	61	23	38	20	17	1.93
52559100--52559137	19	2.0	20	89	5	60	18	15	21	44	1.86
52562143--52562221	37	2.1	37	90	0	122	25	31	18	24	1.98
52562340--52562838	47	10.4	47	91	3	685	29	29	9	32	1.88
52566353--52566540	40	4.8	40	86	1	227	25	28	22	23	1.99
52566880--52566958	28	2.7	29	82	9	99	27	31	15	25	1.95
52566939--52567081	43	3.4	43	95	4	265	25	35	15	23	1.94
52568923--52569000	36	2.1	37	90	2	122	25	30	19	24	1.98
52569164--52569551	47	8.2	47	82	12	458	30	27	9	31	1.89
52569164--52569551	96	4.1	93	85	10	465	30	27	9	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52579547--52579708	44	3.8	42	72	11	114	29	20	22	27	1.99
52579866--52580261	44	8.9	44	69	14	138	31	16	22	28	1.96
52580055--52580321	124	2.1	120	85	4	275	28	17	23	30	1.97
52581779--52581813	12	2.8	12	91	4	52	31	8	0	60	1.27
52585696--52585857	85	1.9	85	82	5	202	32	16	16	34	1.91
52586906--52587073	63	2.6	65	76	8	157	25	18	29	26	1.98
52594093--52594487	40	9.8	40	91	3	569	23	21	29	25	1.99
52594093--52594487	122	3.3	122	92	1	616	23	21	29	25	1.99
52594093--52594487	162	2.4	161	89	3	589	23	21	29	25	1.99
52602842--52603235	40	9.8	40	91	3	567	24	22	28	24	1.99
52602842--52603235	82	4.9	80	91	3	576	24	22	28	24	1.99
52602842--52603235	122	3.3	122	92	1	623	24	22	28	24	1.99
52604744--52604788	19	2.3	19	80	3	54	33	28	0	37	1.58
52607665--52607719	22	2.6	22	77	13	62	56	0	3	40	1.17
52610160--52610188	15	1.9	15	100	0	58	48	3	13	34	1.60
52623277--52623304	7	4.0	7	100	0	56	14	0	0	85	0.59
52623298--52623332	16	2.2	16	90	10	54	28	11	8	51	1.67
52623843--52623896	15	3.5	15	92	2	90	12	5	18	62	1.48
52623842--52623897	16	3.6	16	87	4	87	12	5	17	64	1.45
52624105--52624205	29	3.4	28	73	10	76	42	2	19	34	1.67
52624118--52624205	31	3.0	29	73	8	79	43	3	21	31	1.69
52624462--52625214	72	10.1	72	87	6	878	33	17	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52624763--52625207	230	1.9	229	93	1	766	33	17	16	31	1.93
52635931--52635983	14	3.6	14	76	14	52	9	1	16	71	1.21
52635943--52635980	15	2.5	15	86	0	58	13	2	15	68	1.32
52636196--52636296	31	3.4	29	78	8	105	41	0	21	35	1.60
52642734--52642953	47	4.7	47	77	11	175	23	30	16	28	1.96
52642775--52642954	94	1.9	93	85	3	245	24	31	15	28	1.96
52646233--52646290	28	2.0	30	86	6	84	58	10	3	27	1.47
52646271--52646299	12	2.5	12	94	5	51	68	0	0	31	0.89
52646323--52646365	22	2.0	22	85	0	59	58	9	11	20	1.61
52646330--52646370	11	3.7	11	80	0	55	56	7	14	21	1.63
52648561--52648626	13	5.1	13	81	7	89	37	24	7	30	1.83
52648548--52648626	39	2.0	39	85	4	106	40	22	6	30	1.79
52651134--52651908	48	16.1	48	96	0	1388	36	6	26	30	1.81
52652057--52652163	37	2.9	37	95	0	187	23	18	31	26	1.97
52654558--52654612	24	2.3	24	83	0	74	49	21	1	27	1.60
52656511--52656577	18	3.6	18	78	6	62	73	4	4	17	1.18
52656518--52656558	19	2.1	20	86	4	57	70	7	2	19	1.22
52661767--52661805	19	2.0	20	90	5	62	25	10	20	43	1.83
52664935--52665430	96	5.2	94	92	2	796	32	8	29	29	1.86
52664935--52665430	47	10.4	47	93	2	796	32	8	29	29	1.86
52667565--52667639	38	2.0	38	86	5	107	30	18	26	24	1.98
52667697--52668091	40	9.9	40	91	1	605	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52667697--52668091	119	3.3	120	92	1	623	25	22	27	25	2.00
52671355--52671802	47	9.4	47	91	1	707	32	8	29	29	1.86
52671355--52671802	96	4.7	94	92	1	707	32	8	29	29	1.86
52671355--52671802	143	3.1	141	92	1	716	32	8	29	29	1.86
52675970--52676251	48	5.9	48	83	1	210	24	23	19	32	1.98
52675969--52676252	96	2.9	96	79	4	313	24	23	20	32	1.98
52676021--52676252	96	2.4	96	83	2	315	25	22	19	32	1.98
52682150--52682601	47	9.6	47	95	0	769	32	8	30	28	1.86
52684015--52684246	40	5.8	40	91	2	349	23	21	28	26	1.99
52688240--52688548	47	6.6	47	95	0	510	33	8	30	28	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349