genome.fa.s1.2.7.7.80.10.50.1000.314.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  314  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104813257--104813306	25	2.0	25	84	7	66	30	12	32	26	1.92
104817170--104817354	47	3.9	47	89	0	280	32	11	27	27	1.92
104817559--104817708	37	4.1	37	93	0	246	23	18	30	27	1.98
104819622--104819670	20	2.3	20	86	10	62	67	2	2	28	1.13
104821347--104821983	175	3.6	175	86	3	909	26	18	20	34	1.95
104838571--104838604	17	1.9	18	88	5	52	50	5	5	38	1.51
104848155--104848719	47	11.9	47	96	0	986	31	8	30	29	1.87
104848838--104848916	37	2.1	37	88	4	115	25	18	30	25	1.98
104853526--104853629	43	2.4	43	85	3	138	34	21	15	28	1.94
104854943--104854969	13	2.1	13	100	0	54	22	0	0	77	0.76
104854939--104854982	19	2.4	18	92	3	70	22	2	0	75	0.92
104858863--104858905	18	2.4	18	100	0	86	62	18	0	18	1.32
104871271--104871381	56	2.0	56	98	0	213	40	15	20	23	1.90
104875946--104876001	28	2.0	28	96	0	103	32	26	12	28	1.93
104890581--104890625	22	2.0	22	91	0	72	26	2	2	68	1.12
104895498--104895600	18	5.4	18	68	17	64	36	21	26	15	1.93
104895500--104895600	39	2.6	39	85	0	139	37	20	26	14	1.92
104895500--104895615	39	3.0	39	80	9	130	37	21	25	15	1.92
104902812--104902947	39	3.5	39	88	0	209	37	25	24	13	1.91
104910217--104910245	15	1.9	15	100	0	58	27	27	13	31	1.94
104913162--104913191	15	2.0	15	93	0	51	83	3	0	13	0.77
104913276--104913306	5	6.2	5	100	0	62	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104917389--104917418	11	2.7	11	89	0	51	76	0	6	16	0.99
104923586--104923685	40	2.4	44	85	8	136	26	16	28	30	1.96
104935936--104936027	6	15.2	6	78	7	80	77	4	5	13	1.10
104935924--104936025	31	3.4	29	81	8	98	74	4	5	14	1.18
104935949--104936016	25	2.9	22	86	8	82	79	2	4	13	1.00
104941492--104941663	46	3.8	44	78	11	186	22	19	29	29	1.98
104941484--104941655	93	1.8	93	91	2	283	22	20	29	27	1.99
104944603--104944671	15	4.6	15	83	0	84	11	17	13	57	1.64
104944594--104944681	30	3.0	30	81	8	99	10	17	15	56	1.66
104946601--104946776	46	3.8	45	79	10	203	21	20	29	28	1.98
104946597--104946768	93	1.8	93	93	0	299	21	20	30	27	1.98
104957057--104957098	14	3.2	13	83	12	50	66	9	4	19	1.38
104959881--104959970	45	2.0	45	100	0	180	37	13	26	22	1.91
104962844--104962980	41	3.4	41	91	3	215	36	22	21	18	1.95
104962985--104963111	48	2.7	48	82	7	138	49	29	0	20	1.49
104963239--104963282	15	3.0	15	83	3	54	20	2	29	47	1.62
104963374--104963504	37	3.5	37	94	0	226	11	51	15	22	1.75
104963816--104963895	7	11.0	7	86	7	79	60	1	0	38	1.05
104963790--104963883	7	11.9	8	76	15	81	61	3	1	34	1.19
104963815--104963890	15	5.1	15	82	9	93	63	1	0	35	1.03
104964240--104964272	17	1.9	17	93	0	57	6	27	9	57	1.53
104969174--104969262	6	15.0	6	78	14	53	24	1	2	71	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104969202--104969261	19	3.2	17	82	13	66	20	0	3	76	0.92
104969202--104969261	32	1.9	31	86	10	86	20	0	3	76	0.92
104969370--104969403	16	2.2	16	89	5	52	29	0	0	70	0.87
104969407--104969634	43	5.3	43	82	5	228	25	17	28	28	1.97
104969407--104969628	87	2.6	86	82	4	250	26	16	27	29	1.97
104979100--104979141	23	1.9	23	90	9	70	11	23	38	26	1.90
104989198--104989238	9	4.6	9	100	0	82	78	9	0	12	0.98
105002949--105003007	21	2.9	21	79	18	70	66	0	5	28	1.13
105002952--105003007	22	2.4	24	77	20	64	66	0	5	28	1.14
105002950--105003008	10	5.7	10	76	13	57	66	0	5	28	1.13
105003865--105003906	21	2.0	21	85	4	57	61	0	9	28	1.27
105006091--105006237	41	3.6	41	85	1	188	35	20	19	24	1.96
105007879--105007920	14	3.1	14	76	13	52	33	0	4	61	1.17
105019851--105020337	45	10.8	44	66	12	220	31	14	26	27	1.95
105019858--105020337	90	5.3	90	90	0	710	31	15	26	27	1.95
105021796--105021845	25	2.0	26	88	11	77	32	0	2	66	1.03
105022361--105022585	111	2.0	111	80	7	245	32	4	11	51	1.59
105023338--105023386	21	2.3	21	78	0	62	51	24	0	24	1.49
105023558--105023637	38	2.2	36	86	8	108	27	2	25	45	1.66
105024682--105024794	40	2.8	40	85	5	131	33	15	23	26	1.95
105027250--105027377	19	6.9	19	88	9	194	36	10	14	38	1.80
105027250--105027364	54	2.1	54	98	1	221	37	10	14	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105032533--105032603	14	4.9	14	80	11	81	83	0	15	1	0.73
105032533--105032605	8	8.9	8	74	16	69	83	0	15	1	0.71
105032541--105032602	22	2.9	21	81	9	79	82	0	16	1	0.75
105032535--105032587	6	8.8	6	77	8	54	83	0	15	1	0.74
105033604--105034167	87	6.5	87	92	0	871	29	15	23	31	1.95
105034128--105034799	44	15.3	43	72	13	408	29	14	26	29	1.95
105034040--105034343	132	2.3	130	88	2	455	28	14	25	31	1.94
105034129--105034739	176	3.5	176	91	1	947	29	14	26	29	1.95
105034777--105034933	44	3.5	44	75	11	158	30	16	24	28	1.97
105034783--105034874	46	2.0	47	84	2	123	32	18	23	25	1.97
105034997--105035196	45	4.5	45	85	1	267	33	14	27	25	1.94
105035016--105035182	89	1.9	89	92	0	280	31	13	28	26	1.94
105035021--105035201	89	2.0	89	86	1	236	32	14	27	24	1.95
105035496--105035550	18	2.9	19	94	5	103	36	10	16	36	1.84
105035496--105035559	18	3.2	22	89	10	79	37	9	17	35	1.82
105036942--105036990	24	2.0	24	92	0	80	42	10	6	40	1.63
105037799--105037860	23	2.7	23	87	2	90	46	1	9	41	1.46
105038342--105038383	16	2.6	17	81	11	52	35	0	7	57	1.26
105038387--105038424	10	3.9	10	79	6	51	44	0	0	55	0.99
105038545--105038620	9	8.6	9	86	2	109	47	17	1	34	1.56
105038545--105038648	18	5.8	18	77	5	104	46	16	1	35	1.58
105038541--105038654	53	2.2	54	80	12	130	47	15	1	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105038581--105038666	26	3.1	27	78	8	68	48	13	2	34	1.56
105038762--105038786	7	3.6	7	100	0	50	32	12	16	40	1.84
105043771--105043802	13	2.4	14	94	5	57	37	0	9	53	1.34
105044497--105044562	31	2.1	31	91	0	105	16	6	21	56	1.62
105047723--105047781	23	2.6	24	82	10	63	23	3	1	71	1.11
105049471--105049558	6	14.3	6	76	10	63	11	5	4	78	1.07
105049471--105049545	23	3.0	25	81	13	84	12	5	4	78	1.05
105053483--105053626	40	3.6	40	80	9	125	26	27	22	24	2.00
105061307--105061412	40	2.7	40	83	5	126	26	26	21	25	2.00
105069154--105069297	40	3.6	40	80	9	125	26	27	22	24	2.00
105083715--105083890	46	3.8	45	78	10	185	21	21	28	28	1.98
105083711--105083882	93	1.8	93	91	0	281	20	22	29	27	1.98
105087092--105087264	46	3.7	46	77	14	194	22	20	27	28	1.99
105087089--105087259	93	1.8	93	93	2	299	22	21	28	28	1.99
105089383--105089418	17	2.1	18	94	5	65	19	22	36	22	1.95
105095642--105095691	13	3.8	13	89	0	55	12	34	34	20	1.89
105098827--105098852	13	2.0	13	100	0	52	53	15	0	30	1.42
105101918--105101946	15	1.9	15	100	0	58	31	13	27	27	1.94
105107158--105107209	6	8.5	6	82	2	50	15	1	9	73	1.18
105107169--105107214	18	2.6	18	82	0	56	13	2	13	71	1.23
105109154--105109221	33	2.1	33	100	0	136	26	16	17	39	1.90
105113269--105113346	30	2.6	30	81	0	93	16	26	30	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105114412--105114454	22	1.9	22	85	4	59	18	0	6	74	1.04
105115989--105116254	45	5.7	48	73	14	175	27	18	28	24	1.98
105116118--105116253	49	2.8	49	82	6	170	27	16	29	26	1.97
105116995--105117030	13	2.8	13	95	0	63	5	16	47	30	1.70
105120249--105120280	8	4.2	8	88	11	50	25	0	0	75	0.81
105121224--105121323	43	2.3	43	83	8	141	35	22	20	23	1.96
105121616--105121663	21	2.3	21	100	0	96	0	58	18	22	1.39
105127223--105127374	39	4.1	38	87	6	188	30	0	21	47	1.56
105127208--105127374	57	2.9	56	78	11	178	31	1	20	46	1.59
105127208--105127374	9	17.6	9	76	10	145	31	1	20	46	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349