Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  142  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45453479--45453687
54
3.9
54
78
4
183
40
19
9
31
1.82
45453676--45453915
27
9.0
27
87
3
317
34
19
21
25
1.96
45453589--45453890
134
2.3
134
83
5
353
35
19
17
27
1.94
45453675--45453916
80
3.0
79
87
4
342
33
19
21
24
1.97
45454346--45454407
22
2.9
21
80
7
70
20
22
22
33
1.97
45454566--45454666
27
3.8
26
83
9
114
18
23
19
37
1.94
45454566--45454667
54
1.9
53
83
2
132
18
23
20
37
1.94
45454811--45454883
31
2.4
31
95
0
128
19
15
16
49
1.80
45454803--45454897
6
15.3
6
72
18
70
20
14
15
49
1.79
45462138--45462172
16
2.2
16
89
0
52
14
5
17
62
1.49
45463782--45463834
26
2.0
27
85
7
74
24
15
22
37
1.92
45465320--45465401
26
3.2
26
89
0
137
34
24
8
32
1.86
45471514--45471657
37
3.9
37
84
0
171
31
16
15
36
1.91
45471518--45471663
74
2.0
74
86
0
202
30
15
16
37
1.90
45474754--45474786
16
2.1
16
100
0
66
39
18
18
24
1.92
45475753--45475902
41
3.6
41
77
10
162
22
22
28
27
1.99
45475733--45475902
41
4.2
40
74
18
161
21
22
28
27
1.99
45477529--45477634
48
2.2
48
100
0
212
28
17
29
24
1.98
45477620--45477724
46
2.3
44
84
9
140
26
20
29
23
1.99
45477528--45477745
48
4.7
47
84
8
198
26
20
28
24
1.99
45482582--45482659
29
2.7
28
84
11
104
25
15
30
28
1.96
45482612--45483112
174
2.9
174
96
0
932
29
14
24
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45490893--45490970
29
2.7
28
84
11
104
25
15
30
28
1.96
45490923--45491424
174
2.9
174
97
0
950
29
14
24
31
1.95
45495732--45495758
13
2.1
13
100
0
54
29
0
22
48
1.51
45496228--45496302
38
2.0
38
89
0
114
22
22
25
29
1.99
45496300--45496467
43
3.9
43
89
3
257
14
23
31
30
1.94
45496784--45496891
45
2.5
42
83
8
119
24
24
25
25
2.00
45498443--45498528
43
2.0
43
97
0
163
38
13
17
30
1.89
45506178--45506242
16
4.1
16
80
11
62
60
1
3
35
1.22
45506837--45506905
31
2.4
27
79
13
75
39
11
11
37
1.78
45508229--45508257
13
2.3
13
94
5
51
68
0
0
31
0.89
45508336--45508366
16
1.9
16
93
0
53
48
0
0
51
1.00
45510006--45510035
3
10.3
3
92
7
53
30
0
0
70
0.88
45522128--45522165
18
2.2
16
90
9
58
71
0
7
21
1.11
45522277--45522357
41
2.0
41
100
0
162
43
14
9
32
1.79
45524318--45524357
18
2.2
19
86
13
57
37
0
12
50
1.41
45524986--45525016
14
2.2
14
100
0
62
48
19
6
25
1.72
45526569--45526785
46
4.7
44
75
14
170
28
20
28
23
1.99
45530039--45530132
47
2.0
49
85
4
129
35
25
8
30
1.86
45535124--45535168
3
15.0
3
100
0
90
33
0
0
66
0.92
45549072--45549141
10
6.5
11
70
22
51
47
1
0
51
1.09
45549091--45549130
20
2.0
21
85
14
57
50
2
0
47
1.14
45549082--45549134
21
2.5
21
80
17
65
50
1
0
47
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45550773--45550819
16
2.9
16
78
15
53
65
2
8
23
1.31
45551532--45551565
18
1.9
18
94
5
61
55
5
11
26
1.58
45552280--45552326
16
2.9
16
78
15
53
65
2
8
23
1.31
45553786--45553832
16
2.9
16
78
15
53
65
2
8
23
1.31
45555528--45555565
20
1.9
20
94
0
67
68
0
2
28
1.03
45555503--45555590
33
2.7
33
80
15
85
70
1
4
23
1.13
45555550--45555601
24
2.2
24
86
3
70
76
0
7
15
0.99
45559290--45559336
16
2.9
16
78
15
53
65
2
8
23
1.31
45561061--45561106
15
3.2
15
76
17
53
60
2
6
30
1.34
45561075--45561123
21
2.3
21
85
0
71
65
2
4
28
1.22
45561108--45561163
28
2.1
26
87
9
78
78
0
8
12
0.96
45564090--45564123
18
1.9
18
94
5
61
55
5
11
26
1.58
45564840--45564886
16
2.9
16
78
15
53
65
2
8
23
1.31
45569833--45570004
61
2.8
60
82
10
199
53
2
1
42
1.23
45569870--45569998
58
2.2
57
80
11
156
54
3
0
41
1.21
45571766--45571809
17
2.6
17
96
0
79
38
15
18
27
1.91
45573796--45573841
19
2.4
19
77
0
56
63
2
4
30
1.26
45575416--45575450
16
2.2
16
95
5
63
45
22
5
25
1.74
45580984--45581025
15
2.6
16
82
17
52
30
2
0
66
1.04
45582323--45582377
24
2.3
23
76
11
58
54
0
1
43
1.10
45584883--45584909
7
3.9
7
100
0
54
74
11
0
14
1.08
45585235--45585281
20
2.3
20
85
7
60
59
2
8
29
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45585225--45585272
20
2.6
18
75
18
53
64
2
6
27
1.28
45589948--45590041
46
2.0
47
85
2
127
29
22
23
24
1.99
45592410--45592442
17
2.0
17
94
5
59
36
15
0
48
1.45
45592728--45593183
46
10.0
46
92
1
639
21
24
14
39
1.91
45595319--45595378
13
4.8
12
75
13
50
63
3
0
33
1.11
45599452--45599485
5
6.6
5
93
6
59
79
2
0
17
0.86
45599455--45599485
16
1.9
16
100
0
62
77
3
0
19
0.90
45602174--45602354
40
4.6
40
88
2
258
24
22
25
26
2.00
45602582--45602623
22
1.9
22
85
9
59
33
9
14
42
1.78
45604041--45604083
22
2.0
22
95
0
77
30
16
11
41
1.83
45619988--45620045
28
2.1
28
93
0
98
34
10
20
34
1.87
45623524--45623577
26
2.1
25
82
3
63
33
7
3
55
1.45
45628414--45628580
43
3.9
44
76
4
171
29
13
22
34
1.92
45634282--45634315
16
2.2
15
89
5
50
44
0
0
55
0.99
45635029--45635087
25
2.4
24
82
5
73
40
0
1
57
1.09
45637301--45637353
20
2.6
19
80
11
61
39
18
9
32
1.83
45637500--45637611
24
4.8
24
86
4
140
36
16
21
25
1.94
45637505--45637643
24
6.0
23
83
7
131
35
17
23
24
1.95
45637500--45637643
46
3.1
47
84
8
161
34
17
22
25
1.96
45643819--45643877
20
3.0
20
84
0
64
37
18
8
35
1.81
45644065--45644153
23
3.9
22
79
5
88
31
21
23
23
1.98
45644062--45644153
46
2.0
46
85
8
125
33
20
22
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45646577--45646604
12
2.3
12
100
0
56
42
0
17
39
1.50
45649322--45649346
12
2.1
12
100
0
50
68
8
0
24
1.16
45650033--45650057
12
2.1
12
100
0
50
68
8
0
24
1.16
45648779--45650903
711
3.0
711
99
0
4150
33
17
12
36
1.87
45650744--45650768
12
2.1
12
100
0
50
68
8
0
24
1.16
45656612--45656900
43
6.7
43
79
3
224
31
26
15
26
1.96
45657265--45657309
21
2.1
21
83
0
54
8
46
8
35
1.66
45658916--45659088
46
3.7
46
75
14
176
21
20
27
30
1.98
45658913--45659083
93
1.8
93
88
5
265
21
20
28
29
1.98
45666502--45666675
47
3.7
46
78
12
194
21
20
28
29
1.98
45668144--45668172
13
2.1
14
93
6
51
55
10
0
34
1.34
45674063--45674147
40
2.1
40
95
0
152
20
23
14
42
1.88
45674438--45674500
20
3.1
20
69
26
60
46
3
3
47
1.34
45674438--45674515
41
1.9
41
92
2
131
46
3
2
47
1.34
45675999--45676053
22
2.6
21
83
11
60
27
25
30
16
1.96
45680223--45680272
25
2.0
25
84
0
64
38
6
14
42
1.70
45686325--45687213
442
2.0
443
93
0
1528
37
9
18
33
1.84
45689937--45690024
35
2.5
35
81
5
106
35
21
18
25
1.95
45700141--45700187
20
2.3
20
100
0
94
36
10
19
34
1.86
45700236--45700307
25
2.9
24
85
6
99
27
25
22
25
2.00
45700237--45700320
25
3.4
24
83
8
98
30
21
22
25
1.98
45700538--45700619
38
2.5
31
72
25
85
34
14
26
24
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45701509--45701574
33
2.0
33
96
0
123
21
16
9
53
1.71
45707807--45708050
89
2.7
90
77
6
237
34
16
21
28
1.95
45709642--45709666
12
2.1
12
100
0
50
44
8
0
48
1.32
45710159--45710418
46
5.6
47
79
12
236
24
28
18
29
1.98
45710159--45710421
94
2.8
91
80
12
304
24
28
17
28
1.98
45715699--45715859
40
4.1
40
91
3
263
25
27
22
24
2.00
45715699--45715859
79
2.0
80
91
3
263
25
27
22
24
2.00
45720152--45720368
44
4.7
45
75
14
174
23
30
18
26
1.98
45725671--45725720
20
2.5
20
80
6
57
46
8
14
32
1.73
45742698--45742736
14
3.0
13
89
10
62
46
0
0
53
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349