genome.fa.s1.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  115  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36231238--36231293	23	2.4	23	93	0	94	42	21	16	19	1.89
36237590--36237647	23	2.5	23	85	0	80	37	17	22	22	1.93
36239359--36239385	13	2.1	13	100	0	54	40	22	7	29	1.81
36247769--36247793	13	1.9	13	100	0	50	56	24	0	20	1.43
36248106--36248175	26	2.7	26	75	0	68	37	22	17	22	1.94
36251113--36251151	18	2.2	18	86	9	53	7	2	28	61	1.37
36252628--36252724	39	2.5	39	91	1	151	23	26	23	25	2.00
36254903--36254964	27	2.1	28	82	11	72	16	11	8	64	1.48
36257604--36257655	20	2.8	18	78	21	63	51	3	1	42	1.31
36264980--36265142	39	4.2	39	87	0	227	33	19	24	22	1.97
36264980--36265180	78	2.6	78	82	2	199	33	19	23	23	1.97
36269325--36269384	27	2.3	26	85	2	75	35	20	23	21	1.96
36269352--36269491	67	2.0	67	84	5	181	30	21	27	20	1.98
36274833--36274870	19	2.0	20	85	15	53	39	23	0	36	1.55
36284774--36284881	46	2.3	46	80	3	128	29	25	19	25	1.98
36288168--36288320	40	3.8	40	79	1	137	43	5	19	32	1.73
36308014--36308180	43	3.9	43	80	3	185	27	15	24	32	1.95
36308685--36308732	20	2.5	17	81	18	51	27	2	20	50	1.60
36312425--36312682	47	5.5	44	76	12	196	21	29	20	27	1.98
36312417--36312684	94	2.9	93	77	11	289	22	30	20	27	1.98
36313025--36313058	17	2.0	17	100	0	68	17	41	5	35	1.74
36313373--36313397	12	2.1	12	100	0	50	60	16	8	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36317638--36317701	31	2.1	31	96	0	119	29	12	26	31	1.93
36321832--36321919	45	2.0	45	93	0	149	37	23	11	27	1.89
36322423--36322453	16	1.9	16	93	0	53	38	0	0	61	0.96
36322765--36322804	16	2.5	17	76	15	50	42	0	0	57	0.98
36323643--36323678	18	2.1	18	89	5	56	41	0	25	33	1.55
36324135--36324189	27	2.2	26	84	12	71	45	1	23	29	1.63
36327442--36327479	16	2.4	16	82	4	51	55	0	10	34	1.34
36331356--36331566	46	4.5	47	80	4	212	27	19	27	24	1.99
36336737--36336775	21	1.9	19	85	10	51	5	17	7	69	1.32
36345048--36345224	46	3.7	49	82	7	186	27	20	28	24	1.99
36345097--36345224	49	2.6	49	86	7	172	26	20	28	25	1.99
36346305--36346329	13	1.9	13	100	0	50	24	28	40	8	1.83
36352066--36352278	27	7.9	27	85	2	284	34	17	20	26	1.95
36352948--36352999	27	2.0	26	84	3	68	17	26	21	34	1.95
36355324--36355489	48	3.5	45	84	4	179	28	19	27	24	1.99
36355465--36355579	44	2.6	44	90	0	185	19	16	33	30	1.94
36363214--36363264	25	2.0	25	100	0	102	41	11	7	39	1.71
36364897--36364932	18	1.9	19	88	5	56	16	11	8	63	1.49
36368285--36368361	32	2.4	33	78	6	88	15	0	23	61	1.34
36372718--36372890	46	3.7	46	75	13	183	23	20	26	30	1.99
36372715--36372885	93	1.8	93	93	0	297	22	21	26	29	1.99
36378307--36378356	19	2.6	18	81	12	55	74	2	0	24	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36385431--36385469	20	2.0	20	89	0	60	41	28	12	17	1.87
36389478--36389594	48	2.5	48	81	1	137	27	15	23	34	1.94
36389515--36389616	48	2.1	48	87	0	141	26	14	23	35	1.94
36394461--36394535	22	3.2	22	79	17	96	30	17	13	38	1.88
36394435--36394535	49	2.1	49	98	0	193	30	17	13	37	1.89
36394314--36394613	27	11.3	27	82	5	245	23	17	19	40	1.91
36400353--36400404	23	2.3	22	75	21	54	9	23	1	65	1.32
36402711--36402735	6	4.2	6	100	0	50	68	16	0	16	1.22
36407665--36407724	30	2.0	30	90	0	93	30	25	8	36	1.85
36410151--36410195	20	2.2	20	84	0	54	37	13	2	46	1.55
36412526--36412620	25	3.8	25	92	0	154	25	21	27	26	1.99
36412826--36413229	27	15.0	27	87	0	558	24	21	18	35	1.95
36413191--36413362	27	6.4	27	80	6	145	30	12	20	37	1.89
36413233--36413363	54	2.4	54	84	0	163	32	10	19	38	1.86
36413258--36413364	27	4.0	27	90	0	151	31	10	19	38	1.85
36413314--36413408	45	2.1	45	80	7	104	28	10	22	38	1.87
36413370--36413485	27	4.3	27	86	0	124	31	5	25	38	1.77
36413300--36413436	72	1.9	72	86	3	195	28	8	23	40	1.83
36413372--36413929	54	10.3	54	85	3	182	39	8	21	30	1.83
36413381--36413909	81	6.5	79	88	3	610	39	8	21	30	1.83
36413437--36413909	27	17.5	27	91	0	685	41	8	21	28	1.83
36415529--36415598	25	2.8	26	82	6	90	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36415803--36416016	27	8.0	27	86	2	270	25	20	18	35	1.95
36415803--36416023	81	2.7	81	85	2	311	25	19	18	36	1.94
36416045--36416212	81	2.1	81	85	2	221	31	9	19	39	1.83
36416020--36416335	27	11.7	27	85	2	170	34	8	20	36	1.83
36416087--36416272	81	2.3	81	83	1	212	32	6	21	38	1.80
36416020--36416281	54	4.9	54	80	1	220	33	8	20	37	1.83
36416206--36416670	27	17.2	27	88	0	624	40	7	21	30	1.81
36416206--36416670	81	5.7	81	89	1	689	40	7	21	30	1.81
36417791--36417841	18	2.8	18	75	18	52	5	31	0	62	1.19
36419044--36419135	28	3.3	28	92	0	139	16	21	22	39	1.92
36419043--36419159	56	2.1	54	81	4	135	17	22	21	38	1.93
36426875--36426919	20	2.2	20	88	0	63	37	13	2	46	1.55
36429618--36429655	18	2.1	18	100	0	76	21	10	5	63	1.46
36432267--36432405	48	2.9	48	88	1	199	32	23	13	30	1.93
36435170--36435326	81	1.9	81	89	0	242	29	21	8	41	1.82
36435170--36435328	27	5.9	27	89	0	192	29	20	8	41	1.81
36435170--36435328	54	2.9	54	87	0	219	29	20	8	41	1.81
36435224--36435391	54	3.1	54	80	0	156	36	21	5	36	1.76
36435157--36435353	81	2.4	81	80	0	205	32	19	8	39	1.81
36435346--36435526	27	6.7	27	83	2	195	41	22	7	28	1.80
36435319--36435526	80	2.6	81	82	2	240	41	21	7	29	1.79
36435319--36435531	54	3.9	53	82	4	221	41	20	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36435346--36435532	81	2.3	80	82	3	223	41	21	8	28	1.81
36435448--36435592	54	2.7	54	77	10	127	40	18	11	29	1.85
36435563--36435614	27	1.9	27	88	7	79	42	13	9	34	1.77
36435675--36435751	27	2.9	27	90	3	111	28	20	27	23	1.99
36436567--36436636	25	2.8	25	89	2	106	30	24	20	25	1.99
36438737--36438921	79	2.3	81	83	7	227	24	22	27	24	2.00
36438738--36438921	40	4.6	40	82	9	207	25	22	27	24	2.00
36438790--36438954	79	2.1	79	83	6	201	26	21	27	24	1.99
36446702--36446886	79	2.3	81	83	7	227	24	22	27	24	2.00
36446703--36446886	40	4.6	40	82	9	207	25	22	27	24	2.00
36446755--36446919	79	2.1	79	83	6	201	26	21	27	24	1.99
36448707--36448748	15	2.8	15	88	0	66	52	14	16	16	1.75
36450509--36450576	34	2.0	34	94	0	118	41	19	16	23	1.90
36452033--36452231	84	2.4	85	93	1	330	31	23	13	31	1.93
36452144--36452270	48	2.7	46	82	2	164	32	21	14	32	1.93
36460753--36460804	20	2.6	20	96	0	95	11	34	36	17	1.86
36462308--36462366	18	3.3	18	81	9	77	61	15	1	22	1.43
36462308--36462347	6	6.7	6	94	0	71	65	15	0	20	1.28
36467295--36467402	40	2.7	40	82	1	126	25	18	24	32	1.97
36467304--36467435	40	3.3	40	80	3	122	24	18	24	33	1.97
36467424--36467519	28	3.4	28	78	2	95	31	12	27	29	1.93
36473347--36473373	13	2.1	13	100	0	54	22	14	7	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36488962--36490506	770	2.0	771	98	0	3011	32	17	12	36	1.88
36491178--36491401	40	5.6	40	83	8	278	25	26	22	24	2.00
36491178--36491401	83	2.8	80	85	6	285	25	26	22	24	2.00
36498512--36498544	11	2.8	12	86	9	50	36	9	0	54	1.32
36499305--36499528	40	5.6	40	84	5	274	25	26	22	25	2.00
36499318--36499528	83	2.6	80	86	3	280	26	27	22	24	2.00
36505517--36505571	27	2.0	28	89	10	87	23	21	32	21	1.98
36505551--36505651	40	2.6	40	87	6	145	23	20	30	24	1.99
36513505--36513687	40	4.6	40	84	8	205	24	22	27	25	2.00
36537160--36537234	38	2.0	38	91	0	123	17	28	29	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349