genome.fa.s1.2.7.7.80.10.50.1000.291.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  291  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97445174--97445584	48	8.6	48	82	5	404	25	29	19	26	1.99
97452324--97452354	16	1.9	16	93	0	53	32	25	12	29	1.93
97452587--97452658	32	2.2	32	82	0	90	23	19	29	27	1.98
97454920--97454951	15	2.0	17	88	11	50	43	31	0	25	1.55
97456005--97456217	81	2.6	81	87	1	284	31	20	6	41	1.78
97456024--97456217	27	7.2	27	88	0	235	29	20	6	42	1.78
97456452--97456513	27	2.3	28	83	8	83	20	24	22	32	1.98
97456650--97456759	31	3.5	31	71	7	91	19	16	11	52	1.73
97456650--97456777	6	20.8	6	67	13	64	18	16	11	53	1.73
97456679--97456765	37	2.4	37	82	0	120	17	16	12	54	1.72
97456685--97456751	19	3.6	19	73	4	64	17	16	11	53	1.72
97458772--97458965	27	7.2	27	85	0	235	29	22	6	41	1.78
97458772--97458965	81	2.4	81	87	0	262	29	22	6	41	1.78
97459469--97459638	6	27.7	6	70	13	96	20	20	11	48	1.79
97459491--97459621	37	3.5	37	91	0	199	19	21	11	47	1.81
97459469--97459621	31	4.5	31	74	17	126	19	20	11	48	1.80
97461054--97461223	40	4.3	40	87	2	200	25	21	27	24	1.99
97461093--97461258	79	2.1	79	79	4	174	25	21	28	24	1.99
97474262--97474318	30	1.9	30	100	0	114	28	31	22	17	1.97
97480919--97480948	9	3.2	9	95	4	51	43	0	0	56	0.99
97481910--97482025	22	5.1	22	83	7	126	18	22	16	43	1.88
97487282--97487355	29	2.6	29	86	4	96	27	16	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97495379--97495452	29	2.6	29	86	4	96	27	16	31	25	1.96
97502184--97502544	47	7.6	47	90	4	532	27	29	8	33	1.87
97502184--97502544	96	3.8	94	88	5	532	27	29	8	33	1.87
97502184--97502544	143	2.6	143	89	4	536	27	29	8	33	1.87
97510762--97510856	48	2.0	48	89	0	145	28	24	20	27	1.99
97531013--97531171	27	5.9	27	82	10	182	35	22	22	18	1.95
97531013--97531171	54	3.0	54	88	2	223	35	22	22	18	1.95
97532784--97532891	26	4.2	26	93	0	189	36	24	7	32	1.83
97537925--97538083	27	5.9	27	81	11	175	35	22	23	18	1.96
97537943--97538083	54	2.6	54	90	2	230	35	23	23	17	1.95
97539703--97539810	26	4.2	26	93	0	189	36	24	7	32	1.83
97544895--97544919	13	1.9	13	100	0	50	56	0	0	44	0.99
97548652--97548703	20	2.5	20	81	12	61	51	3	9	34	1.53
97549161--97549224	4	16.0	4	100	0	128	25	0	25	50	1.50
97554885--97554941	21	2.5	24	75	21	68	36	0	1	61	1.07
97556999--97557054	29	2.0	29	85	3	78	19	35	21	23	1.96
97558513--97558684	47	3.7	47	75	11	154	26	19	30	23	1.98
97558461--97558775	94	3.4	93	79	6	316	27	19	29	24	1.98
97559525--97559656	55	2.4	55	82	5	142	23	25	27	24	2.00
97565933--97566292	47	7.6	46	71	13	139	27	20	28	23	1.99
97565933--97566249	94	3.4	93	77	6	284	27	19	29	23	1.98
97565985--97566296	141	2.2	141	81	8	341	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97570840--97570898	2	29.5	2	85	0	73	42	0	57	0	0.98
97570843--97570898	16	3.5	16	92	0	85	41	0	58	0	0.98
97573677--97573752	26	2.9	26	82	3	73	39	9	17	34	1.81
97577144--97577192	24	2.0	24	96	0	89	53	14	4	28	1.59
97581056--97581246	40	4.8	40	78	7	183	25	28	23	23	1.99
97581056--97581244	80	2.4	79	82	6	213	25	29	22	23	1.99
97581065--97581246	79	2.3	80	81	4	217	25	28	23	23	2.00
97587611--97587840	40	5.8	40	93	1	365	26	28	21	23	1.99
97599014--97599143	43	3.0	43	82	0	152	26	27	16	29	1.97
97603695--97603768	6	13.0	6	79	11	57	0	45	0	54	1.00
97603718--97603768	3	17.7	3	84	8	70	0	39	0	60	0.97
97604666--97604709	22	2.0	22	83	12	56	36	43	0	20	1.52
97606065--97606455	192	2.0	192	99	0	773	43	20	10	25	1.84
97606484--97606602	59	2.0	59	98	0	229	31	11	17	39	1.86
97613356--97613651	38	7.8	39	78	8	240	33	28	20	17	1.95
97613351--97613651	114	2.6	114	79	3	322	34	28	19	17	1.95
97624327--97624550	39	5.7	40	86	8	275	25	21	27	24	1.99
97624327--97624550	79	2.8	81	84	9	291	25	21	27	24	1.99
97624327--97624583	79	3.3	79	80	9	215	26	21	27	24	1.99
97632192--97632449	76	3.3	79	84	10	311	25	22	27	24	2.00
97632243--97632449	39	5.3	39	91	4	305	25	21	28	25	1.99
97632192--97632482	78	3.7	77	83	9	285	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97637061--97637294	40	5.9	40	92	1	373	27	23	26	22	1.99
97642457--97642634	27	6.6	27	85	3	214	26	14	28	30	1.95
97642458--97642613	82	1.9	81	89	3	242	26	14	28	30	1.95
97642454--97642634	82	2.2	81	84	2	238	27	14	27	30	1.95
97649252--97649427	27	6.6	27	82	5	196	27	14	28	29	1.95
97649253--97649407	81	1.9	81	86	5	224	27	14	28	29	1.95
97654378--97654637	40	6.6	40	91	2	384	27	24	26	21	1.99
97654378--97654604	79	2.9	80	91	2	377	26	23	26	22	2.00
97654378--97654637	119	2.2	119	86	3	364	27	24	26	21	1.99
97663321--97663368	24	2.0	24	83	0	60	18	18	18	43	1.88
97663368--97663432	26	2.6	25	79	15	73	30	24	21	23	1.99
97663558--97663643	20	4.4	20	72	5	86	32	4	19	43	1.72
97672960--97672984	13	1.9	13	100	0	50	48	12	0	40	1.40
97691475--97691614	59	2.3	62	80	9	164	45	13	5	35	1.67
97695407--97695621	40	5.4	40	89	2	301	23	22	28	26	1.99
97711727--97711844	59	2.0	59	100	0	236	52	20	11	15	1.73
97712206--97712304	35	2.8	35	76	13	96	43	16	9	31	1.79
97716296--97716353	29	2.0	29	100	0	116	37	17	0	44	1.49
97716932--97716968	18	2.1	18	100	0	74	27	10	10	51	1.70
97720599--97720644	23	2.0	23	100	0	92	52	4	4	39	1.41
97722053--97722100	22	2.2	22	81	7	53	18	14	6	60	1.55
97722141--97722199	30	2.0	30	96	0	109	28	3	10	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97729243--97729297	25	2.2	25	100	0	110	30	16	16	36	1.91
97730669--97730720	27	1.9	27	88	7	79	30	25	21	23	1.99
97731431--97731473	17	2.4	17	84	7	50	20	39	27	11	1.88
97731556--97731590	9	3.9	9	92	0	52	11	34	34	20	1.88
97748002--97748098	20	4.8	20	73	5	79	32	17	36	13	1.89
97747996--97748099	40	2.6	41	81	6	115	31	18	36	13	1.89
97756687--97756856	43	4.0	43	74	11	152	24	15	26	34	1.95
97756693--97756864	86	2.0	85	80	9	190	24	15	26	33	1.95
97764705--97764736	12	2.7	12	100	0	64	6	28	40	25	1.79
97772853--97775629	924	3.0	925	97	0	5319	35	16	12	35	1.87
97776428--97776537	24	4.4	25	76	14	95	32	20	22	24	1.97
97776430--97776548	26	4.8	24	76	12	91	31	19	23	25	1.98
97781091--97781136	25	1.9	23	100	0	74	28	8	13	50	1.70
97781092--97781152	25	2.5	25	86	2	70	27	14	9	47	1.76
97781725--97781760	15	2.4	15	85	0	54	50	5	5	38	1.49
97781993--97782112	23	5.3	23	78	7	129	32	15	13	39	1.85
97788869--97788987	48	2.7	44	77	11	116	31	22	18	27	1.97
97791192--97791248	30	1.9	30	85	7	80	24	0	17	57	1.39
97792358--97792390	16	2.0	17	94	5	59	12	24	12	51	1.73
97800255--97800370	61	1.9	58	86	5	160	39	3	6	50	1.44
97805715--97805937	95	2.3	95	83	8	292	26	17	29	27	1.97
97805715--97805938	48	4.7	48	83	5	283	26	16	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97805861--97805965	48	2.2	48	82	0	120	31	20	23	24	1.98
97808736--97808781	24	1.9	24	83	16	60	50	0	39	10	1.38
97809429--97809475	22	2.1	22	100	0	94	40	0	27	31	1.57
97810452--97810530	39	2.0	39	100	0	158	35	12	10	41	1.77
97812009--97812046	3	12.7	3	94	0	67	0	34	2	63	1.09
97812927--97813040	60	1.9	60	80	3	131	35	20	19	24	1.95
97834939--97834972	16	2.2	15	89	5	50	55	0	0	44	0.99
97834936--97834975	22	1.9	19	85	14	53	55	0	0	45	0.99
97835039--97835096	31	2.0	29	83	16	75	50	8	5	36	1.56
97857902--97857955	28	1.9	28	84	0	72	24	12	33	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349