genome.fa.s1.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  148  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47140054--47140360	154	2.0	154	88	1	454	26	29	22	20	1.99
47141659--47141841	46	4.0	46	94	0	294	24	31	9	34	1.87
47141815--47142099	47	6.1	47	89	0	374	25	28	11	34	1.90
47141858--47141979	23	5.3	22	63	27	65	23	29	13	32	1.94
47141907--47141982	24	3.2	24	66	23	70	23	31	13	31	1.93
47141927--47142004	23	3.2	25	65	23	67	28	29	10	32	1.90
47149085--47149161	37	2.1	36	82	2	91	33	12	10	42	1.77
47149591--47149650	28	2.1	28	87	6	86	33	30	26	10	1.89
47150108--47150137	14	2.1	14	93	0	51	36	13	3	46	1.60
47151491--47151526	18	2.0	18	88	0	54	61	5	2	30	1.33
47156650--47156769	43	2.8	42	79	3	141	30	16	21	30	1.96
47160735--47160779	22	2.0	22	95	0	81	28	6	24	40	1.80
47162753--47162797	20	2.1	21	88	12	65	62	0	2	35	1.08
47171316--47171376	31	1.9	33	83	12	83	62	1	1	34	1.15
47171316--47171376	32	1.9	31	83	12	79	62	1	1	34	1.15
47171355--47171397	22	2.0	22	90	4	70	67	0	0	32	0.91
47171330--47171395	10	6.5	10	70	16	55	65	1	0	33	1.02
47171423--47171486	24	2.7	24	86	13	80	64	0	0	35	0.94
47171470--47171509	18	2.2	19	86	4	55	62	0	0	37	0.95
47171356--47171491	17	7.3	20	66	21	73	63	1	1	33	1.12
47171346--47171513	57	3.0	53	74	22	157	61	1	1	35	1.11
47171929--47171969	19	2.3	19	87	8	59	21	14	4	58	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47173037--47173077	9	4.6	9	100	0	82	46	0	12	41	1.41
47184334--47184501	40	4.2	40	83	4	106	25	27	23	23	2.00
47184357--47184501	40	3.6	40	85	4	193	23	26	24	25	2.00
47185691--47185766	38	2.0	38	100	0	152	31	23	13	31	1.93
47197190--47197297	43	2.5	43	85	5	157	30	25	13	30	1.94
47205699--47205818	43	2.8	42	80	12	154	25	24	17	32	1.97
47211937--47212040	39	2.6	39	92	1	163	25	26	21	25	1.99
47211909--47212093	79	2.3	81	82	9	211	24	26	23	25	2.00
47213222--47213453	56	4.1	56	98	0	446	22	22	9	45	1.80
47215430--47215607	27	6.6	27	84	3	205	29	28	15	26	1.96
47215451--47215606	82	1.9	81	88	3	233	29	28	15	26	1.96
47223594--47223771	27	6.6	27	84	3	205	29	28	15	26	1.96
47223615--47223770	82	1.9	81	88	3	233	29	28	15	26	1.96
47231276--47231405	39	3.3	38	87	7	156	25	27	22	24	2.00
47231276--47231458	40	4.6	39	80	9	178	25	27	22	24	2.00
47232587--47232873	56	5.1	56	97	0	549	22	22	9	45	1.80
47232587--47232873	111	2.6	112	98	0	558	22	22	9	45	1.80
47240029--47240210	49	3.7	50	77	6	192	25	19	28	27	1.99
47243213--47243278	15	4.5	15	78	16	75	9	12	13	65	1.48
47243208--47243284	30	2.6	29	80	17	95	9	11	15	63	1.51
47245403--47245597	50	3.9	49	79	7	187	27	18	26	27	1.98
47245676--47245830	39	4.0	39	86	0	220	25	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47253843--47254041	78	2.6	78	83	7	228	24	28	23	24	2.00
47253891--47254045	39	4.0	39	88	0	238	25	27	21	25	1.99
47253863--47254045	78	2.3	78	85	1	242	24	27	22	25	2.00
47259353--47259386	16	2.1	16	88	5	50	0	11	11	76	1.02
47260986--47261024	16	2.4	17	91	4	62	48	35	5	10	1.59
47261640--47261682	19	2.2	19	83	8	50	16	25	2	55	1.53
47262314--47262397	29	2.9	29	86	8	118	26	13	28	32	1.93
47265259--47265297	16	2.4	17	91	4	62	48	35	5	10	1.59
47278776--47278843	34	2.0	34	86	11	95	26	17	26	29	1.98
47281615--47281644	16	1.9	16	93	6	53	50	20	0	30	1.49
47293822--47293927	29	3.6	29	82	2	131	20	23	12	43	1.86
47293808--47293920	59	1.9	59	85	0	154	20	23	15	40	1.90
47295511--47295596	45	1.9	45	85	0	118	27	26	20	24	1.99
47295926--47296080	43	3.6	43	93	0	256	30	32	25	11	1.91
47296078--47296152	38	2.0	38	89	0	114	29	25	22	22	1.99
47301799--47301875	20	3.8	20	82	3	84	22	28	0	49	1.50
47302319--47302481	89	1.8	89	91	0	272	28	24	17	28	1.98
47307547--47307769	40	5.6	40	85	3	236	26	27	21	24	1.99
47307701--47307778	40	1.9	41	82	10	97	26	28	21	23	1.99
47309424--47309455	13	2.5	13	94	0	55	34	15	28	21	1.94
47315262--47315428	74	2.2	78	83	6	216	26	27	21	24	1.99
47315264--47315481	40	5.6	39	83	8	214	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47315413--47315490	40	1.9	41	82	10	97	26	28	21	23	1.99
47317001--47317162	29	5.5	29	73	7	157	36	12	27	22	1.91
47317001--47317234	88	2.7	88	87	1	308	37	13	26	23	1.92
47316989--47317162	59	2.9	58	77	9	199	36	14	27	22	1.93
47319690--47319860	45	3.7	47	79	14	178	20	21	29	28	1.98
47319695--47319868	46	3.8	45	80	12	201	20	21	29	28	1.98
47322786--47322849	15	4.4	15	84	11	89	10	15	12	60	1.58
47325225--47325399	46	3.8	45	78	10	183	21	20	28	30	1.98
47325221--47325392	93	1.8	93	89	0	272	21	20	28	29	1.98
47336362--47336558	27	7.3	27	83	3	254	26	21	17	34	1.95
47336362--47336558	80	2.4	81	84	2	263	26	21	17	34	1.95
47340105--47340172	33	2.0	34	85	2	93	26	25	20	27	1.99
47340141--47340199	27	2.2	26	79	8	64	28	25	22	23	1.99
47340153--47340204	27	1.9	27	88	0	77	28	23	21	26	1.99
47340541--47340696	27	5.4	27	73	15	107	25	21	21	30	1.98
47340603--47340677	36	2.1	36	82	0	87	25	21	20	33	1.97
47340575--47340696	63	1.9	63	88	0	181	25	22	19	32	1.97
47340638--47340709	27	2.7	27	86	4	101	26	22	16	34	1.95
47341563--47341625	30	2.1	31	93	3	110	52	25	9	12	1.69
47344020--47344122	46	2.2	46	96	0	188	23	30	17	29	1.97
47350555--47350684	29	4.5	29	91	0	199	30	27	14	27	1.95
47358377--47358506	29	4.5	29	91	0	199	30	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47378380--47378418	14	2.7	15	76	8	53	43	10	5	41	1.61
47379558--47379682	27	4.6	27	88	4	139	39	24	8	28	1.83
47379558--47379682	54	2.3	54	87	2	171	39	24	8	28	1.83
47379558--47379698	54	2.6	54	83	4	142	39	23	7	29	1.82
47379612--47379793	27	6.7	27	81	2	129	36	24	9	29	1.87
47379775--47380267	27	18.3	27	88	1	684	33	20	21	24	1.97
47380895--47380984	27	3.3	26	84	6	108	17	23	22	36	1.95
47381133--47381221	6	14.3	6	69	19	58	19	19	14	47	1.83
47381133--47381212	31	2.5	31	87	2	106	18	20	13	47	1.82
47383172--47383358	54	3.5	54	78	4	182	39	20	8	32	1.83
47383172--47383271	27	3.7	27	91	2	157	42	23	6	29	1.77
47383172--47383296	27	4.6	27	89	2	155	40	21	8	30	1.82
47383167--47383407	27	8.9	27	79	0	126	37	21	8	31	1.84
47383389--47383746	27	13.3	27	85	0	448	34	20	20	23	1.96
47384172--47384236	22	3.0	22	75	8	69	23	20	24	32	1.98
47384395--47384496	27	3.8	27	80	5	89	19	21	19	39	1.93
47384656--47384718	6	10.3	6	81	10	74	19	19	15	46	1.85
47384644--47384718	37	2.0	37	89	0	114	18	18	16	46	1.84
47386644--47386829	27	6.9	27	82	7	182	37	21	10	31	1.87
47386644--47386829	81	2.3	81	82	5	207	37	21	10	31	1.87
47386805--47386879	27	2.8	26	75	4	78	36	24	9	30	1.87
47386861--47387647	27	29.3	27	82	3	899	35	19	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47388074--47388138	22	3.0	22	75	8	60	20	23	21	35	1.96
47388297--47388398	27	3.8	27	85	5	116	18	24	21	35	1.96
47388297--47388398	54	1.9	53	83	2	132	18	24	21	35	1.96
47388535--47388628	6	15.3	6	71	18	61	19	17	13	50	1.79
47388535--47388614	37	2.1	38	90	2	126	18	17	13	50	1.79
47391446--47392157	359	2.0	359	99	0	1415	30	19	19	31	1.96
47406985--47407168	40	4.6	40	77	10	189	26	27	22	24	2.00
47406987--47407169	79	2.3	81	82	7	214	26	26	22	24	2.00
47414741--47414919	79	2.2	80	83	7	222	24	27	22	24	2.00
47414716--47414919	40	5.1	40	81	8	220	25	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349