genome.fa.s1.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  276  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92195223--92195349	44	2.9	45	78	3	141	23	25	12	37	1.90
92197306--92197333	12	2.3	12	100	0	56	39	10	7	42	1.67
92198634--92198808	45	3.9	45	82	0	188	35	25	16	22	1.95
92218901--92218961	31	2.0	31	90	0	95	26	26	14	32	1.95
92219155--92219274	24	5.0	24	88	5	163	25	22	24	28	1.99
92219323--92219389	20	3.3	20	91	0	107	31	20	13	34	1.92
92219426--92219473	25	1.9	25	91	0	78	27	12	25	35	1.92
92223649--92223703	29	2.0	28	85	7	76	30	21	12	34	1.91
92226118--92226147	13	2.3	13	94	0	51	40	16	10	33	1.82
92226593--92226623	12	2.6	12	94	0	53	16	22	35	25	1.94
92230147--92230209	30	2.1	29	94	2	108	26	17	22	33	1.96
92234335--92234367	14	2.4	14	100	0	66	39	21	18	21	1.93
92236041--92236315	27	10.2	27	81	6	245	40	21	8	29	1.82
92236055--92236287	81	2.9	80	87	3	306	42	21	8	28	1.81
92236049--92236373	54	6.0	53	77	7	215	41	20	8	30	1.81
92236055--92236316	81	3.2	78	82	9	278	41	20	8	29	1.82
92236041--92236374	27	12.3	27	75	12	143	40	20	8	29	1.82
92236432--92236523	27	3.4	27	85	8	116	35	20	25	18	1.95
92237322--92237457	26	5.3	26	89	3	190	28	20	23	27	1.99
92238575--92238865	38	6.9	38	71	19	204	30	14	24	30	1.95
92238609--92238816	47	4.6	46	81	12	261	31	15	23	29	1.95
92238652--92238858	85	2.4	85	95	0	360	30	14	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92240142--92240172	6	5.0	6	96	4	53	32	3	0	64	1.09
92242653--92242694	15	2.8	15	85	0	57	19	16	11	52	1.74
92245409--92245702	38	7.0	38	71	19	210	30	14	23	30	1.95
92245446--92245653	47	4.6	46	80	12	243	31	15	22	30	1.95
92245489--92245697	85	2.5	85	94	0	364	31	14	23	30	1.94
92247585--92247766	48	3.9	48	67	17	146	29	24	20	25	1.99
92260057--92260092	18	2.0	18	100	0	72	50	5	16	27	1.68
92291056--92291080	12	2.1	12	100	0	50	24	40	28	8	1.83
92291791--92291897	54	2.0	54	83	3	135	28	19	33	18	1.96
92292052--92292092	22	1.9	22	85	5	57	36	12	12	39	1.80
92297044--92297072	7	4.1	7	100	0	58	13	0	41	44	1.44
92297341--92297407	12	6.2	11	77	16	68	19	1	2	76	1.00
92297350--92297404	8	6.9	8	78	14	51	18	1	3	76	1.02
92299089--92299148	31	1.9	32	83	10	79	26	26	13	33	1.93
92300098--92300143	19	2.4	19	92	7	76	65	4	15	15	1.43
92308554--92308578	7	3.6	7	100	0	50	0	76	0	24	0.80
92317625--92317713	31	2.8	32	87	3	126	32	42	7	16	1.77
92317848--92317882	12	2.9	12	95	0	61	34	31	8	25	1.86
92321315--92321339	12	2.1	12	100	0	50	36	0	40	24	1.55
92327635--92327667	16	2.1	16	100	0	66	12	24	33	30	1.91
92328175--92328204	13	2.2	14	94	5	53	33	0	0	66	0.92
92328060--92328341	141	2.0	143	80	1	316	27	9	9	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92328321--92328345	13	1.9	13	100	0	50	32	0	4	64	1.12
92328964--92328988	13	1.9	13	100	0	50	64	4	0	32	1.12
92333333--92333453	59	2.1	59	96	0	224	28	29	12	28	1.93
92333765--92333792	8	3.5	8	100	0	56	50	0	21	28	1.49
92333832--92333874	18	2.4	18	80	0	50	32	0	6	60	1.23
92340143--92340167	7	3.6	7	100	0	50	28	48	0	24	1.52
92344795--92344830	9	3.9	9	89	7	54	83	0	13	2	0.76
92344795--92344830	17	2.0	17	89	10	54	83	0	13	2	0.76
92348299--92348323	3	8.3	3	100	0	50	68	0	0	32	0.90
92355986--92356130	45	3.2	46	83	6	197	44	17	17	20	1.87
92355986--92356147	45	3.6	43	75	16	148	44	17	18	19	1.87
92356119--92356309	45	4.3	45	91	1	285	35	17	21	25	1.95
92356119--92356309	89	2.1	90	88	0	285	35	17	21	25	1.95
92356120--92356333	89	2.4	89	83	5	252	35	17	21	25	1.95
92356167--92356365	90	2.2	89	81	4	222	38	17	20	24	1.93
92356339--92356511	46	3.8	45	86	2	220	45	17	20	16	1.85
92356339--92356511	92	1.9	91	86	1	247	45	17	20	16	1.85
92356344--92356511	91	1.8	91	88	1	255	44	17	21	16	1.86
92363247--92363295	22	2.2	22	88	0	71	30	24	12	32	1.92
92366725--92366794	28	2.5	28	76	0	68	31	8	27	32	1.87
92370218--92370275	16	3.6	17	88	9	86	29	24	3	43	1.70
92370218--92370309	15	5.9	15	82	8	96	28	25	4	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92370478--92370506	14	2.0	15	93	6	51	48	6	6	37	1.57
92371569--92371613	22	2.0	22	100	0	90	22	15	31	31	1.95
92373274--92373315	22	1.9	22	85	9	59	21	23	14	40	1.90
92386996--92387178	40	4.6	39	81	4	188	25	27	20	26	1.99
92394848--92395108	40	6.6	40	87	4	325	26	27	20	24	1.99
92400263--92400815	273	2.0	273	95	0	980	29	10	25	33	1.90
92404460--92404529	28	2.5	28	84	9	90	28	14	25	31	1.95
92406403--92406452	23	2.1	24	85	3	66	34	0	26	40	1.56
92411026--92411060	17	2.2	15	90	10	52	0	31	0	68	0.90
92411367--92411419	21	2.5	21	84	3	70	20	32	7	39	1.81
92411361--92411399	18	2.2	18	85	0	51	20	30	5	43	1.73
92428572--92428610	18	2.1	19	85	4	53	61	12	12	12	1.57
92432832--92432878	23	2.0	23	88	8	69	74	2	6	17	1.12
92433871--92433906	17	2.1	17	90	10	56	50	0	0	50	1.00
92438931--92439011	25	3.2	25	63	16	67	54	8	19	17	1.68
92438919--92439020	51	2.0	51	98	0	195	50	9	20	19	1.76
92438919--92438999	26	3.2	26	64	22	71	54	9	16	19	1.69
92455785--92456192	47	8.6	47	91	2	620	29	28	8	33	1.87
92455840--92456192	98	3.7	96	93	2	557	30	28	8	33	1.86
92459775--92460051	40	6.9	40	93	1	466	24	26	22	26	2.00
92459792--92460130	40	8.5	40	88	5	233	24	27	22	26	2.00
92459775--92460130	160	2.2	161	85	5	465	24	27	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92460433--92460511	29	2.7	29	86	5	106	27	32	15	24	1.95
92462677--92462729	22	2.4	22	100	0	106	24	35	15	24	1.94
92462606--92462707	47	2.2	47	82	3	125	26	32	9	31	1.89
92462607--92462823	116	1.9	116	89	1	337	27	31	10	30	1.90
92462699--92463082	49	8.0	49	95	2	676	30	28	8	32	1.87
92462699--92463082	96	4.0	96	96	2	691	30	28	8	32	1.87
92464853--92464892	20	2.0	20	100	0	80	35	20	25	20	1.96
92464855--92464898	20	2.4	18	88	11	63	38	20	22	18	1.93
92465691--92465769	29	2.7	29	86	5	106	27	32	15	24	1.95
92467909--92468309	47	8.4	49	92	4	662	30	28	7	32	1.86
92467905--92468309	96	4.2	96	93	4	685	30	28	7	32	1.86
92468324--92468363	18	2.1	20	86	9	57	40	20	2	37	1.66
92481060--92481185	62	2.0	62	93	3	218	31	7	23	38	1.82
92482252--92482286	18	2.1	17	89	10	54	45	2	14	37	1.59
92483412--92483451	20	2.0	21	85	5	55	20	22	17	40	1.92
92483511--92483575	21	3.2	21	73	20	75	15	26	18	40	1.90
92483493--92483593	39	2.6	39	91	0	157	15	27	19	36	1.93
92484929--92484968	22	1.9	21	85	10	55	25	15	15	45	1.84
92488254--92488366	33	3.5	33	86	4	158	38	13	22	25	1.90
92488354--92488439	31	2.7	30	79	18	93	29	13	29	27	1.95
92488502--92488554	27	2.0	27	88	0	79	37	9	24	28	1.86
92488508--92488567	27	2.2	27	81	0	66	41	8	23	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92488617--92488684	34	2.0	34	85	0	91	27	13	23	35	1.92
92492933--92492969	17	2.1	18	90	5	58	48	5	2	43	1.40
92493789--92493829	22	2.0	20	85	9	55	46	2	0	51	1.14
92493888--92493913	9	2.9	9	100	0	52	42	0	0	57	0.98
92494013--92494096	41	2.0	42	88	6	125	51	4	7	36	1.51
92494701--92494747	22	2.1	23	84	4	60	57	4	2	36	1.30
92494723--92494824	29	3.6	28	78	15	102	64	2	1	30	1.19
92494782--92494850	31	2.3	29	85	9	86	53	5	2	37	1.40
92495020--92495069	8	6.4	8	84	6	50	42	0	4	54	1.19
92509829--92509884	27	2.1	27	96	0	103	28	14	25	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349