genome.fa.s1.2.7.7.80.10.50.1000.339.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  339  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112120691--112120743	26	2.0	26	96	0	97	56	7	9	26	1.57
112122872--112122922	24	2.1	25	85	7	70	11	15	1	70	1.25
112136477--112136525	20	2.5	20	89	0	71	12	28	38	20	1.89
112154520--112154629	27	4.1	27	77	8	98	39	19	24	17	1.92
112155998--112156068	24	3.0	24	91	0	115	26	38	0	35	1.57
112155974--112156068	48	2.0	47	81	8	111	24	36	3	35	1.71
112159885--112159923	13	3.0	13	88	0	60	7	48	30	12	1.69
112162329--112162440	27	4.2	26	84	7	134	36	24	24	15	1.93
112162329--112162440	54	2.1	54	86	3	154	36	24	24	15	1.93
112163867--112163937	24	3.0	24	93	0	115	25	39	1	33	1.65
112165274--112165303	14	2.2	14	94	5	53	33	6	0	60	1.23
112165481--112165512	17	1.9	17	93	6	57	68	6	12	12	1.37
112169529--112169576	25	1.9	25	86	0	69	35	22	14	27	1.93
112169620--112169677	19	3.0	20	92	5	100	36	12	20	31	1.89
112169624--112169678	11	5.5	11	71	20	57	36	12	20	30	1.90
112169613--112169678	20	3.3	20	89	4	107	34	12	21	31	1.90
112169728--112169870	24	6.0	24	87	4	200	29	21	21	27	1.99
112169728--112169849	47	2.6	47	90	1	190	30	21	20	27	1.98
112169729--112169870	71	2.0	72	88	4	216	28	21	21	27	1.99
112170063--112170126	31	2.1	31	90	0	101	35	15	23	25	1.94
112177635--112177682	25	1.9	25	91	0	78	35	25	14	25	1.94
112177726--112177783	19	3.0	20	92	5	100	36	12	20	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112177730--112177784	11	5.5	11	71	20	57	36	12	20	30	1.90
112177719--112177784	20	3.3	20	89	4	107	34	12	21	31	1.90
112177834--112177976	24	6.0	24	87	4	200	28	21	20	28	1.98
112177834--112177955	47	2.6	47	90	1	190	29	21	19	29	1.98
112178169--112178232	31	2.1	31	84	0	83	34	15	23	26	1.95
112180289--112180758	44	10.6	45	74	9	308	37	16	16	30	1.91
112180288--112180709	89	4.8	90	84	3	439	37	16	15	30	1.90
112180288--112180727	178	2.5	176	82	4	526	37	16	15	30	1.90
112180289--112180833	89	6.1	87	79	6	292	36	16	17	29	1.92
112180682--112180854	92	1.9	92	86	2	249	30	19	22	27	1.98
112183468--112183557	45	2.0	45	93	0	153	34	21	4	40	1.73
112184377--112184471	40	2.4	39	84	3	111	35	36	12	14	1.85
112184931--112184967	17	2.2	17	90	0	56	21	40	21	16	1.91
112189903--112189946	22	2.0	22	95	0	79	34	34	18	13	1.90
112196974--112197019	23	1.9	25	86	8	69	32	0	2	65	1.05
112202343--112202622	131	2.1	130	83	3	346	36	17	17	28	1.93
112204273--112204306	6	5.5	6	96	3	59	82	0	2	14	0.79
112205541--112205583	18	2.3	19	80	19	54	13	2	11	72	1.22
112205547--112205582	18	2.0	18	89	10	56	13	2	5	77	1.05
112205911--112206343	132	3.3	132	82	4	489	29	24	18	27	1.98
112206413--112206533	64	1.9	64	87	3	181	34	14	19	31	1.92
112211786--112211832	19	2.6	18	80	12	51	72	4	6	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112220421--112220447	14	1.9	14	100	0	54	37	7	11	44	1.68
112221332--112221360	12	2.3	13	94	5	51	34	10	0	55	1.34
112224818--112225041	104	2.2	104	90	1	351	17	17	31	32	1.94
112224960--112225111	71	2.1	72	92	1	252	23	17	29	30	1.97
112237087--112237212	39	3.2	39	96	0	225	21	22	27	28	1.99
112237500--112237538	18	2.2	18	100	0	78	38	12	15	33	1.85
112251002--112251031	15	1.9	16	93	6	53	26	26	20	26	1.99
112251284--112251340	24	2.5	22	81	15	71	29	21	17	31	1.96
112252858--112252900	16	2.4	18	88	11	63	32	6	0	60	1.23
112252861--112252900	19	2.1	19	90	9	64	32	5	0	62	1.17
112252992--112253101	27	4.4	27	67	24	78	37	5	3	53	1.42
112252989--112253113	47	2.5	51	77	15	129	36	6	3	54	1.42
112253439--112253491	13	4.2	13	78	11	65	37	5	1	54	1.35
112253486--112253564	11	7.5	11	71	8	58	35	1	3	59	1.24
112253470--112253563	13	7.4	13	73	16	72	37	2	3	57	1.27
112253448--112253564	49	2.4	47	80	10	128	36	2	3	57	1.29
112253518--112253553	14	2.7	13	87	8	54	36	0	0	63	0.94
112253461--112253561	9	11.8	9	67	17	54	36	1	3	57	1.29
112253495--112253572	40	2.0	39	87	5	113	35	2	2	58	1.25
112253438--112253628	87	2.2	87	79	11	196	35	7	3	53	1.46
112265912--112266229	164	2.0	160	87	5	460	27	16	21	34	1.94
112266072--112266315	85	2.8	85	87	6	332	25	16	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112267935--112267971	16	2.3	16	90	0	56	32	0	0	67	0.91
112268057--112268216	73	2.2	72	79	11	175	36	5	4	53	1.43
112268310--112268348	17	2.4	16	87	12	53	38	5	7	48	1.54
112268270--112268335	27	2.7	24	76	19	64	40	4	6	48	1.48
112268478--112268582	24	4.3	24	76	17	92	38	2	2	56	1.29
112268469--112268522	14	4.2	13	76	13	58	37	5	1	55	1.34
112268517--112268596	11	7.5	11	73	16	62	37	1	3	57	1.25
112268517--112268595	2	41.5	2	73	14	51	37	1	3	56	1.25
112268517--112268595	13	6.2	13	80	11	76	37	1	3	56	1.25
112268468--112268595	13	9.9	12	71	18	62	37	3	3	56	1.31
112270684--112270739	22	2.7	21	75	8	60	46	0	0	53	1.00
112271396--112271450	17	2.9	19	73	15	60	38	1	0	60	1.08
112274206--112274326	50	2.4	51	88	2	181	38	15	21	24	1.93
112274310--112274396	31	2.8	31	87	0	129	28	20	26	24	1.99
112274496--112274594	49	2.0	48	94	5	173	26	16	26	31	1.96
112276472--112276542	25	3.0	25	72	22	64	46	1	1	50	1.18
112280533--112280566	8	4.5	8	96	3	54	64	5	0	29	1.17
112280522--112280577	24	2.3	24	77	17	62	66	3	1	28	1.19
112280526--112280573	16	3.1	15	84	6	60	64	4	2	29	1.23
112280691--112280748	19	2.7	22	71	17	59	56	3	6	32	1.42
112280727--112280791	25	2.8	24	83	6	80	52	6	7	33	1.55
112280810--112280939	22	5.5	23	72	14	79	57	2	3	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112281422--112281595	30	5.8	30	92	1	287	21	3	48	25	1.66
112281422--112281595	59	2.9	59	96	1	312	21	3	48	25	1.66
112281422--112281595	89	1.9	90	92	1	296	21	3	48	25	1.66
112282298--112282504	76	2.8	75	87	5	285	34	19	14	31	1.92
112282491--112282518	14	2.0	14	100	0	56	57	7	21	14	1.61
112282500--112282668	73	2.3	74	87	2	250	36	21	18	24	1.95
112282648--112282682	14	2.5	14	95	0	61	60	8	14	17	1.58
112282338--112282827	160	3.0	160	86	5	639	34	21	16	27	1.95
112282575--112282757	87	2.1	87	84	7	230	37	21	15	25	1.93
112282702--112282898	71	2.8	71	83	4	247	32	22	14	30	1.93
112282890--112283027	70	2.0	71	89	4	217	38	23	15	22	1.92
112282757--112283041	157	1.8	155	87	5	425	34	23	15	27	1.95
112282927--112283277	125	2.8	121	79	12	374	35	23	15	26	1.94
112283175--112283800	75	8.5	74	87	6	855	32	20	15	31	1.94
112283180--112283814	147	4.3	146	92	3	967	33	20	15	31	1.93
112283823--112283992	71	2.4	70	85	3	209	34	22	14	28	1.93
112377701--112377752	15	3.2	15	73	19	50	44	0	1	53	1.11
112377785--112377821	16	2.3	16	86	13	58	40	0	0	59	0.97
112388781--112388877	28	3.6	28	82	9	107	16	5	31	46	1.69
112389087--112389138	21	2.5	21	77	0	68	13	28	28	28	1.94
112396047--112396320	46	6.0	46	90	0	397	22	23	14	39	1.91
112402598--112402657	27	2.2	27	96	0	111	46	33	8	11	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112403053--112403157	51	2.1	51	85	3	140	30	16	19	34	1.93
112405287--112405350	29	2.1	29	82	8	83	53	0	10	35	1.36
112405289--112405337	15	3.3	15	85	5	73	51	0	10	38	1.36
112405375--112405452	26	2.9	26	88	5	102	75	0	21	2	0.92
112410178--112410240	30	2.1	30	87	0	90	23	6	11	58	1.55
112419215--112419251	18	2.1	18	100	0	74	51	16	5	27	1.66
112429452--112429509	31	1.9	31	86	10	84	36	15	5	43	1.69
112430651--112430678	5	5.6	5	100	0	56	0	17	0	82	0.68
112435079--112435105	10	2.7	10	100	0	54	40	0	0	59	0.98
112437089--112437153	31	2.1	31	82	5	78	27	15	16	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349