genome.fa.s1.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  165  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53435239--53435462	40	5.7	40	88	3	260	26	26	20	25	1.99
53443475--53443554	39	2.1	39	97	0	151	28	15	25	31	1.95
53449650--53449692	19	2.3	19	80	15	54	16	25	37	20	1.93
53450309--53450362	28	1.9	28	88	0	81	27	22	24	25	2.00
53450338--53450401	33	1.9	33	90	0	101	28	18	26	26	1.98
53458016--53458095	28	2.9	29	72	12	78	17	20	21	41	1.91
53458257--53458326	33	2.1	34	94	2	124	27	22	27	22	1.99
53459186--53459215	16	1.9	15	93	6	51	33	23	0	43	1.54
53459416--53459699	49	5.7	49	75	5	230	29	27	16	26	1.97
53462714--53462764	20	2.3	23	80	12	63	31	7	13	47	1.72
53466460--53466506	20	2.4	21	82	10	64	65	10	6	17	1.43
53468734--53468910	81	2.2	81	96	1	327	27	10	26	35	1.89
53481139--53481281	43	3.3	43	79	5	146	30	23	14	31	1.94
53483895--53483919	13	1.9	13	100	0	50	24	24	20	32	1.98
53489633--53489666	8	4.2	8	92	0	50	82	0	0	17	0.67
53494467--53494506	21	1.9	21	100	0	80	55	5	7	32	1.50
53494594--53494625	17	2.0	17	88	11	50	31	3	3	62	1.26
53506875--53507138	39	6.8	39	91	0	429	30	28	21	19	1.97
53510477--53510733	55	4.8	54	74	14	196	36	17	24	21	1.94
53514372--53514733	45	7.7	45	75	13	336	25	17	29	26	1.98
53514357--53514832	95	5.0	95	86	3	611	26	17	30	25	1.97
53520943--53520988	23	2.0	24	87	12	69	32	15	2	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53521193--53521293	42	2.3	44	81	3	116	34	26	16	21	1.95
53521193--53521308	44	2.7	42	82	2	124	32	25	18	23	1.97
53524939--53525217	50	5.5	50	79	5	301	26	17	26	30	1.97
53524986--53525167	101	1.8	101	90	0	292	27	19	24	28	1.99
53524939--53525231	151	1.9	152	90	1	471	26	18	25	29	1.98
53526337--53526601	133	2.0	132	94	0	467	26	12	19	41	1.87
53527311--53527482	43	4.0	43	72	15	149	23	18	26	31	1.97
53527594--53527666	33	2.2	33	97	2	137	31	8	23	36	1.84
53538089--53538266	40	4.5	40	86	3	227	23	28	24	23	1.99
53539624--53539661	19	2.0	20	84	5	51	23	15	0	60	1.35
53540393--53540442	25	2.0	25	96	0	91	22	16	10	52	1.73
53540395--53540452	25	2.4	25	88	2	82	25	17	6	50	1.71
53540494--53540537	23	1.9	23	95	0	79	45	9	9	36	1.68
53552615--53552649	18	2.0	18	88	5	54	22	5	11	60	1.52
53554086--53554110	9	2.8	9	100	0	50	28	0	24	48	1.52
53554432--53554578	42	3.4	42	77	13	140	25	19	23	31	1.98
53554432--53554590	43	3.7	43	79	9	173	25	18	23	31	1.98
53563635--53563820	40	4.7	40	78	11	202	26	26	22	25	2.00
53571574--53571759	40	4.7	40	82	6	225	26	26	22	24	2.00
53578543--53578602	30	2.0	30	90	0	93	38	8	25	28	1.84
53581115--53581232	43	2.8	42	81	7	130	26	19	22	32	1.97
53582542--53582593	24	2.3	23	84	12	65	26	0	23	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53585186--53585242	30	1.9	30	88	0	87	24	28	10	36	1.88
53585198--53585283	29	2.9	29	80	1	100	20	30	13	34	1.92
53596902--53597131	95	2.5	90	80	10	243	30	24	20	25	1.99
53596902--53597129	48	4.9	48	76	11	204	29	24	20	25	1.99
53597674--53598305	324	2.0	324	96	0	1167	30	13	22	32	1.93
53603867--53604143	40	6.9	40	93	0	464	24	28	20	25	1.99
53611261--53611457	54	3.6	54	85	4	254	37	17	22	22	1.94
53613946--53614032	27	3.2	27	88	0	111	36	19	21	21	1.95
53619844--53619904	30	2.0	31	90	3	97	34	4	22	37	1.76
53621608--53621864	27	9.5	27	86	0	316	41	19	8	31	1.80
53621608--53621864	54	4.8	54	88	0	361	41	19	8	31	1.80
53621608--53621915	54	5.7	54	81	5	302	40	19	8	31	1.81
53621608--53621920	27	11.6	27	80	5	258	40	19	8	30	1.82
53621963--53622150	27	7.0	27	88	1	272	36	18	20	23	1.95
53622599--53622645	22	2.1	22	84	7	60	23	27	21	27	1.99
53622804--53622905	27	3.8	27	81	5	116	20	22	20	36	1.95
53623072--53623198	6	20.7	6	72	16	91	20	19	14	45	1.85
53623063--53623184	31	3.9	31	90	0	172	22	20	13	43	1.87
53623841--53623991	55	2.8	54	83	7	191	35	18	25	20	1.95
53623844--53624005	53	3.0	53	80	8	184	35	17	25	21	1.95
53628695--53628873	27	6.6	27	84	0	187	24	15	18	41	1.88
53628675--53628835	54	3.0	54	81	3	182	27	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53629148--53629209	18	3.5	18	80	4	72	22	19	12	45	1.84
53631345--53631528	79	2.3	81	82	11	222	25	27	22	25	2.00
53631345--53631528	40	4.6	41	83	12	199	25	27	22	25	2.00
53635232--53635314	40	2.2	38	91	8	134	14	27	37	20	1.92
53635523--53635669	27	5.4	27	86	0	186	25	12	19	42	1.86
53639746--53639981	40	5.8	40	89	4	330	30	22	25	22	1.99
53640138--53640182	14	3.2	14	80	0	54	26	0	24	48	1.51
53640751--53640795	14	3.2	14	87	6	65	22	0	28	48	1.50
53643199--53643244	21	2.2	21	84	0	56	45	2	21	30	1.64
53652629--53652808	48	3.8	48	85	2	245	37	26	16	19	1.92
53652629--53652808	96	1.9	96	89	0	279	37	26	16	19	1.92
53653377--53653415	21	1.9	20	89	5	60	56	20	0	23	1.42
53658248--53658298	25	2.0	25	100	0	102	41	11	15	31	1.83
53661190--53661238	21	2.3	21	96	0	89	38	28	12	20	1.89
53671094--53671231	37	3.7	37	91	0	213	26	30	18	25	1.98
53671097--53671239	74	1.9	74	92	2	243	24	32	18	24	1.97
53671402--53671587	47	4.0	47	90	0	282	24	29	13	32	1.94
53676445--53676618	27	6.4	27	87	0	222	40	20	8	31	1.82
53676445--53676675	54	4.3	54	81	3	223	38	21	8	31	1.83
53676466--53676673	27	7.7	27	78	2	121	40	21	7	30	1.80
53676462--53676672	81	2.6	81	81	4	212	40	20	7	31	1.80
53685127--53685213	36	2.5	34	92	5	140	44	19	11	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53690718--53690865	43	3.5	42	76	10	140	28	20	24	26	1.99
53696319--53696388	28	2.5	28	90	0	113	37	10	24	28	1.88
53702332--53702373	22	2.0	22	86	13	63	54	0	0	45	0.99
53702335--53702368	16	2.2	15	89	5	50	55	0	0	44	0.99
53704701--53704767	10	6.6	10	83	6	82	37	10	19	32	1.86
53704701--53704767	21	3.3	21	89	4	93	37	10	19	32	1.86
53704707--53704779	32	2.3	31	83	2	83	36	12	17	32	1.87
53704813--53704866	25	2.2	25	89	0	81	38	14	20	25	1.91
53710031--53710087	26	2.1	27	96	3	107	31	8	14	45	1.75
53715058--53715288	47	4.6	47	79	15	246	32	9	30	28	1.89
53715134--53715162	14	2.1	14	100	0	58	20	27	31	20	1.98
53715087--53715209	61	2.0	61	100	0	246	29	13	30	27	1.94
53721386--53721755	105	3.6	105	94	2	624	18	20	30	30	1.97
53721670--53721721	27	1.9	27	96	0	95	13	25	32	28	1.93
53730314--53730531	42	4.6	47	72	22	154	32	9	29	29	1.88
53730348--53730456	57	1.9	55	87	12	159	30	11	28	30	1.91
53734245--53734298	28	1.9	28	92	7	92	18	24	24	33	1.97
53736109--53736168	28	2.2	27	87	3	84	36	6	26	30	1.82
53736487--53736818	99	3.3	101	91	4	537	19	21	27	31	1.97
53736487--53736846	100	3.6	102	90	5	536	20	21	27	30	1.98
53741569--53741713	40	3.6	40	85	4	193	25	24	26	23	2.00
53749592--53749767	40	4.6	41	78	14	171	25	23	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53752202--53752239	18	2.1	18	100	0	76	39	10	0	50	1.37
53752432--53752499	28	2.4	28	82	7	75	48	8	4	38	1.54
53752462--53752527	28	2.4	28	84	5	80	46	10	9	33	1.70
53752458--53752515	28	2.1	28	90	6	91	46	10	8	34	1.69
53752544--53752656	32	3.5	34	73	20	107	39	16	2	40	1.63
53752546--53752625	36	2.2	37	84	10	103	37	17	2	42	1.63
53753632--53753671	19	2.1	19	85	0	53	65	7	20	7	1.43
53753965--53754095	65	2.0	65	98	0	253	27	23	10	38	1.88
53754684--53754791	51	2.1	51	84	6	148	45	15	6	32	1.72
53754761--53754793	17	1.9	17	93	0	57	51	15	6	27	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349