Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  124  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39519207--39519343
37
3.7
37
97
0
247
24
32
18
24
1.97
39519515--39519922
48
8.5
48
98
0
744
29
28
7
33
1.85
39522492--39522554
27
2.3
27
84
10
76
61
4
4
28
1.36
39523368--39523447
40
2.0
40
97
0
151
46
12
5
36
1.64
39525395--39525529
69
2.0
69
86
7
195
48
5
5
40
1.50
39526959--39527069
55
2.0
55
100
0
222
28
11
12
46
1.77
39527914--39527952
17
2.4
17
91
4
62
46
5
2
46
1.38
39528772--39528828
30
1.9
30
82
13
73
47
3
0
49
1.18
39529368--39529415
24
2.0
24
100
0
96
62
0
4
33
1.14
39551840--39551871
6
5.3
6
100
0
64
62
0
18
18
1.33
39566451--39566492
21
2.0
21
100
0
84
28
9
28
33
1.88
39568869--39568926
22
2.6
21
78
10
71
43
18
6
31
1.77
39570349--39570421
23
3.2
23
100
0
146
34
4
39
21
1.73
39572906--39572945
21
1.9
21
85
10
55
72
7
0
20
1.08
39576478--39576515
19
2.0
20
85
15
53
39
23
0
36
1.55
39576819--39576985
42
3.8
42
77
16
192
29
28
20
22
1.98
39576743--39576882
72
1.9
75
91
5
232
30
30
20
18
1.96
39576850--39576985
46
2.9
49
79
13
176
29
27
19
22
1.98
39576818--39576985
93
1.8
89
94
5
300
29
28
20
22
1.98
39586376--39586544
93
1.8
91
87
7
252
29
27
20
22
1.99
39588277--39588376
38
2.6
39
90
4
157
30
3
21
46
1.66
39590056--39590093
19
2.0
20
85
15
53
39
23
0
36
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39590322--39590492
93
1.8
93
90
7
276
28
27
20
23
1.99
39590317--39590489
46
3.7
46
79
14
196
29
26
20
23
1.99
39590912--39590971
30
2.0
30
86
0
84
33
25
5
36
1.78
39592250--39592390
39
3.6
39
90
0
219
31
3
19
45
1.68
39594537--39594723
43
4.3
43
87
1
230
27
25
20
26
1.99
39594566--39594742
43
4.1
43
91
0
221
27
28
20
23
1.99
39596778--39596822
22
2.0
22
91
0
72
33
2
15
48
1.57
39600548--39600592
22
2.0
22
91
0
72
33
2
15
48
1.57
39602530--39602561
16
2.0
16
93
0
55
21
0
3
75
0.95
39603176--39603276
7
14.1
7
73
8
69
40
38
2
17
1.65
39603177--39603227
15
3.6
14
82
12
52
45
33
0
21
1.52
39603367--39603503
41
3.4
41
94
1
240
18
27
23
30
1.97
39603367--39603544
82
2.2
81
87
3
250
20
25
22
32
1.98
39604840--39604874
18
1.9
18
88
0
52
51
14
8
25
1.70
39605126--39605151
12
2.2
12
100
0
52
57
15
7
19
1.62
39605341--39605395
27
2.0
27
96
0
101
40
5
14
40
1.69
39607008--39607329
170
1.9
170
85
3
452
35
14
11
38
1.82
39608116--39608221
49
2.2
49
91
0
167
26
26
19
27
1.99
39609369--39609484
27
4.3
26
85
5
142
37
22
23
17
1.94
39609369--39609484
54
2.1
54
87
3
162
37
22
23
17
1.94
39611102--39611211
26
4.2
26
94
0
184
36
24
5
33
1.79
39617969--39618090
48
2.5
48
85
2
156
25
18
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39621412--39621466
25
2.2
26
93
3
94
36
27
5
30
1.79
39625367--39625397
12
2.6
12
94
0
53
16
51
22
9
1.73
39626997--39627049
26
2.0
26
82
7
63
26
15
20
37
1.92
39627329--39627356
8
3.5
8
100
0
56
0
21
21
57
1.41
39628536--39628591
26
2.2
26
96
0
103
37
25
7
30
1.82
39632360--39632417
29
1.9
31
83
13
77
46
1
18
32
1.60
39635957--39636049
40
2.4
40
83
3
118
38
35
11
13
1.82
39642326--39642373
25
1.9
25
83
8
62
33
22
12
31
1.91
39645101--39645149
25
2.0
24
84
11
64
8
32
0
59
1.27
39645356--39645389
11
3.1
11
86
0
50
64
11
8
14
1.49
39650327--39650377
19
2.7
19
93
0
84
27
21
39
11
1.88
39650327--39650377
9
5.4
9
81
9
66
27
21
39
11
1.88
39650455--39650571
28
4.1
28
81
10
123
28
13
32
25
1.94
39650467--39650571
28
3.7
28
83
9
133
26
15
34
23
1.94
39653024--39653068
20
2.2
20
92
0
72
46
8
0
44
1.34
39653292--39653325
11
3.1
11
86
0
50
64
11
8
14
1.49
39659784--39659881
49
2.0
49
93
0
169
31
17
26
24
1.97
39660073--39660125
22
2.4
22
93
0
97
20
15
20
43
1.88
39660073--39660134
22
2.9
22
87
2
72
20
14
20
43
1.87
39660214--39660397
43
4.3
43
82
8
205
32
28
15
23
1.95
39661930--39661964
6
5.5
6
87
12
52
48
0
5
45
1.26
39661929--39661964
13
2.8
13
100
0
72
47
0
8
44
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39664528--39664572
19
2.3
19
84
3
63
17
2
4
75
1.07
39664918--39664956
7
5.6
7
87
0
51
35
38
2
23
1.68
39665242--39665274
15
2.3
15
89
5
50
48
30
0
21
1.50
39665232--39665273
22
2.0
21
85
4
57
40
38
0
21
1.53
39665490--39665536
21
2.2
21
84
3
58
27
0
25
46
1.53
39665577--39665754
41
4.4
40
88
3
250
20
26
20
32
1.97
39665577--39665801
82
2.8
81
85
5
267
22
24
20
32
1.97
39665577--39665816
123
2.0
122
80
5
279
22
25
20
32
1.97
39665849--39665874
12
2.2
12
100
0
52
46
30
15
7
1.74
39665982--39666538
301
1.9
301
94
2
985
31
13
16
38
1.87
39670633--39670677
22
2.0
22
83
8
56
40
4
0
55
1.20
39672609--39672705
28
3.5
27
77
6
95
25
32
15
25
1.95
39681206--39681383
89
2.0
89
100
0
356
29
6
20
43
1.77
39681755--39681788
7
4.9
7
88
0
50
32
0
35
32
1.58
39684628--39684830
49
4.2
48
73
11
155
23
27
19
30
1.98
39684654--39684830
98
1.8
98
83
4
241
23
27
20
29
1.99
39684654--39684879
98
2.3
98
78
5
224
23
27
19
28
1.98
39686883--39687023
40
3.5
40
86
0
183
18
22
6
52
1.68
39686992--39687073
25
3.3
25
91
1
130
15
21
2
59
1.48
39688465--39688503
16
2.4
17
83
12
55
46
15
2
35
1.60
39698717--39698839
55
2.2
56
84
2
151
26
26
30
16
1.97
39698717--39698858
55
2.6
56
77
6
139
28
25
28
17
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39703981--39704027
15
3.1
15
75
0
58
48
10
2
38
1.50
39705084--39705112
13
2.1
14
93
6
51
44
3
0
51
1.18
39712392--39712520
41
3.2
41
81
6
136
20
22
6
50
1.70
39715019--39715065
21
2.2
21
85
7
60
25
4
12
57
1.54
39717989--39718068
29
2.8
28
87
7
117
22
15
35
27
1.94
39725014--39725238
46
4.9
47
78
11
193
28
17
28
24
1.97
39725061--39725275
46
4.6
47
76
10
176
29
17
27
25
1.98
39725061--39725235
92
1.9
94
85
11
245
28
18
29
24
1.98
39727521--39727637
46
2.5
46
84
6
139
28
17
29
24
1.98
39740563--39740587
4
6.2
4
100
0
50
76
0
0
24
0.80
39741597--39741647
8
6.4
8
80
8
59
49
13
23
13
1.78
39741597--39741647
24
2.1
24
96
0
93
49
13
23
13
1.78
39741859--39741974
29
4.0
29
80
1
135
26
15
29
28
1.96
39742255--39742309
27
2.1
27
82
3
67
49
21
12
16
1.79
39742349--39742373
11
2.3
11
100
0
50
36
28
8
28
1.85
39745542--39745762
46
4.7
44
74
13
160
26
18
29
25
1.98
39748395--39748435
20
2.0
20
100
0
82
29
4
24
41
1.75
39749020--39749216
45
4.4
45
78
6
204
38
21
19
20
1.94
39749020--39749216
90
2.2
89
92
2
333
38
21
19
20
1.94
39749020--39749234
89
2.4
89
88
5
326
38
21
19
20
1.94
39749748--39749881
28
4.8
27
79
10
101
58
5
11
23
1.55
39749765--39749881
28
4.1
28
80
9
123
61
6
11
20
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39749765--39749881
57
2.1
57
86
3
164
61
6
11
20
1.52
39751183--39751259
38
2.0
38
100
0
154
41
7
10
40
1.68
39756471--39756551
34
2.4
33
79
6
92
24
20
22
32
1.98
39767035--39767368
171
1.9
170
84
8
446
12
29
9
48
1.73
39771252--39771327
21
3.4
21
68
16
55
28
1
15
53
1.50
39772567--39772606
20
2.0
20
100
0
80
50
0
0
50
1.00
39795860--39796394
128
4.2
128
87
1
741
45
19
6
28
1.75
39796302--39796405
54
1.9
54
84
3
138
51
19
1
26
1.57
39797181--39797228
17
2.9
16
88
11
78
31
0
0
68
0.90
39807269--39807603
39
8.6
39
93
1
483
12
28
23
36
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349